Wall clock time and date at job start Wed Apr 1 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47241 * 2 1 4 4 C 1.52999 * 109.46648 * 240.00302 * 2 1 3 5 5 N 1.46907 * 109.47056 * 185.00098 * 4 2 1 6 6 C 1.46897 * 111.00022 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47110 * 180.02562 * 6 5 4 8 8 O 1.21294 * 120.00174 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00265 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00500 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99619 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00173 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00451 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99775 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.46937 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46942 * 120.00320 * 14 12 10 17 17 H 1.48502 * 109.46868 * 239.99933 * 14 12 10 18 18 N 1.46502 * 109.47019 * 120.00741 * 2 1 3 19 19 C 1.34778 * 119.99798 * 274.99536 * 18 2 1 20 20 O 1.21577 * 119.99990 * 359.97438 * 19 18 2 21 21 C 1.47709 * 120.00105 * 180.02562 * 19 18 2 22 22 C 1.41494 * 126.51988 * 179.97438 * 21 19 18 23 23 C 1.35367 * 105.50551 * 179.97438 * 22 21 19 24 24 N 1.35032 * 107.22544 * 0.26675 * 23 22 21 25 25 C 1.46499 * 124.88387 * 179.70874 * 24 23 22 26 26 F 1.39904 * 109.47306 * 300.00242 * 25 24 23 27 27 F 1.39902 * 109.46977 * 59.99864 * 25 24 23 28 28 N 1.28473 * 110.23186 * 359.54546 * 24 23 22 29 29 H 1.08991 * 109.47536 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46539 * 299.99804 * 1 2 3 31 31 H 1.08998 * 109.47175 * 59.98898 * 1 2 3 32 32 H 1.09001 * 109.47627 * 305.00027 * 4 2 1 33 33 H 1.09005 * 109.47176 * 65.00145 * 4 2 1 34 34 H 1.00903 * 110.99966 * 56.04796 * 5 4 2 35 35 H 1.09006 * 109.47433 * 299.99886 * 6 5 4 36 36 H 1.09002 * 109.47313 * 59.99721 * 6 5 4 37 37 H 0.97006 * 120.00019 * 0.02562 * 9 7 6 38 38 H 0.96988 * 120.00344 * 179.97438 * 13 12 10 39 39 H 0.96993 * 120.00185 * 94.99686 * 18 2 1 40 40 H 1.08008 * 127.24794 * 359.95867 * 22 21 19 41 41 H 1.08002 * 126.38433 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47126 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8267 -1.1906 6 6 4.0302 -1.5148 -2.3769 7 6 5.5315 -1.6045 -2.2810 8 8 6.1064 -1.1412 -1.3187 9 7 6.2352 -2.2004 -3.2639 10 6 7.6010 -2.2815 -3.1769 11 1 8.1130 -1.8682 -2.3204 12 6 8.3265 -2.8954 -4.1905 13 7 7.7036 -3.3978 -5.2329 14 14 10.1875 -3.0065 -4.0715 15 1 10.6416 -2.3704 -2.8089 16 1 10.5999 -4.4331 -4.0828 17 1 10.8002 -2.3050 -5.2282 18 7 2.0183 -0.6908 1.1961 19 6 2.1471 -0.0185 2.3571 20 8 1.8585 1.1612 2.4117 21 6 2.6400 -0.7148 3.5630 22 6 2.8278 -0.1471 4.8454 23 6 3.2887 -1.1547 5.6231 24 7 3.3746 -2.2541 4.8439 25 6 3.8383 -3.5679 5.2968 26 9 5.1514 -3.4622 5.7678 27 9 3.0091 -4.0256 6.3265 28 7 2.9880 -1.9832 3.6491 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.6053 -1.7198 -1.2953 33 1 1.7515 -0.1582 -2.1370 34 1 3.7995 -1.2885 -0.3435 35 1 3.6094 -2.5189 -2.4312 36 1 3.7556 -0.9570 -3.2722 37 1 5.7754 -2.5713 -4.0333 38 1 8.2101 -3.8260 -5.9406 39 1 2.2490 -1.6319 1.1525 40 1 2.6427 0.8750 5.1414 41 1 3.5448 -1.0899 6.6703 42 1 3.8066 -4.2711 4.4646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732957789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:28 Heat of formation + Delta-G solvation = -78.584405 kcal Electronic energy + Delta-G solvation = -29424.821784 eV Core-core repulsion = 24692.108933 eV Total energy + Delta-G solvation = -4732.712850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.93493 -48.01867 -43.01936 -39.74543 -38.29782 -36.71841 -34.28641 -33.67562 -33.32528 -31.60105 -31.21151 -30.70039 -27.60411 -27.07882 -25.06680 -24.01209 -23.18174 -22.02412 -21.15885 -20.39539 -19.28408 -19.10884 -18.48912 -18.15909 -17.89161 -17.53675 -16.41082 -16.11218 -15.94182 -15.34583 -15.04622 -14.86210 -14.73971 -14.51750 -14.34381 -14.33728 -14.25116 -13.99195 -13.87941 -13.61073 -13.47834 -13.07250 -12.65955 -12.63925 -12.47734 -11.95205 -11.75544 -11.61703 -11.47782 -11.46745 -11.09079 -10.98381 -10.34834 -10.27395 -10.23059 -9.94783 -9.64940 -9.52634 -9.20497 -8.47276 -8.08778 -7.96566 -6.42518 -3.83216 1.06322 1.27404 1.72599 2.92465 2.97149 3.15755 3.22729 3.26422 3.33926 3.51897 3.90040 4.00150 4.04128 4.20307 4.26541 4.31214 4.71945 4.85614 5.01015 5.17541 5.19594 5.21576 5.26707 5.35206 5.43654 5.56148 5.62327 5.76361 5.83650 5.93799 5.96900 6.04434 6.06911 6.25460 6.37564 7.14370 7.16544 7.45595 7.54897 7.60141 8.05882 8.06049 8.60734 9.17556 9.53688 10.05288 10.75347 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008694 B = 0.002624 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3219.726791 B =10667.377525 C =13111.771492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.101 0.899 4 C 0.050 3.950 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 N -0.707 5.707 19 C 0.610 3.390 20 O -0.526 6.526 21 C 0.014 3.986 22 C -0.168 4.168 23 C -0.002 4.002 24 N -0.347 5.347 25 C 0.497 3.503 26 F -0.172 7.172 27 F -0.175 7.175 28 N -0.247 5.247 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.089 0.911 34 H 0.348 0.652 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.404 0.596 40 H 0.171 0.829 41 H 0.188 0.812 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.548 -1.246 17.819 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.119 0.881 4 C -0.080 4.080 5 N -0.301 5.301 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.465 6.465 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 N -0.359 5.359 19 C 0.393 3.607 20 O -0.400 6.400 21 C -0.150 4.150 22 C -0.195 4.195 23 C -0.141 4.141 24 N -0.144 5.144 25 C 0.363 3.637 26 F -0.153 7.153 27 F -0.157 7.157 28 N -0.080 5.080 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.168 0.832 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.239 0.761 40 H 0.188 0.812 41 H 0.205 0.795 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -15.017 -0.678 17.538 23.099 hybrid contribution 0.604 -1.107 0.333 1.304 sum -14.412 -1.786 17.871 23.028 Atomic orbital electron populations 1.22155 0.94801 1.02197 1.02895 1.21123 0.93572 0.98591 0.82774 0.88077 1.22311 0.88894 0.99043 0.97717 1.60016 1.07451 1.57594 1.05027 1.21691 0.95136 0.96963 0.94457 1.19812 0.88092 0.84231 0.85313 1.90538 1.71112 1.51445 1.33453 1.41868 1.07419 1.50933 1.19874 1.19754 0.81530 1.34969 1.06534 0.87897 1.25256 1.00672 0.96810 0.95209 1.69614 1.36606 1.38769 1.09375 0.85809 0.82270 0.77860 0.78469 1.19217 1.20779 1.20713 1.45859 1.66474 1.14257 1.09297 1.16716 0.77177 0.85565 0.81237 1.90811 1.50228 1.14585 1.84338 1.22196 1.06091 0.90265 0.96430 1.21903 1.05233 1.01001 0.91337 1.23001 1.05123 0.86411 0.99600 1.46501 1.49874 1.10262 1.07726 1.21210 0.72397 0.82542 0.87524 1.93176 1.36017 1.95822 1.90271 1.93153 1.72289 1.87607 1.62613 1.73483 1.15220 1.17791 1.01489 0.92475 0.91795 0.91178 0.94902 0.89265 0.83159 0.93852 0.89412 0.77472 0.91931 0.76133 0.81159 0.79526 0.80952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.14 1.63 2.88 -67.93 -0.20 1.43 16 3 H 0.10 1.37 7.58 -51.93 -0.39 0.98 16 4 C 0.05 0.58 5.30 -3.82 -0.02 0.56 16 5 N -0.67 -10.63 6.12 -115.05 -0.70 -11.34 16 6 C 0.05 0.87 6.17 -4.98 -0.03 0.83 16 7 C 0.44 10.39 7.82 -10.99 -0.09 10.30 16 8 O -0.58 -15.96 15.78 5.55 0.09 -15.88 16 9 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 10 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 11 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 14 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 N -0.71 -8.34 4.35 -54.79 -0.24 -8.58 16 19 C 0.61 8.32 7.79 -12.39 -0.10 8.22 16 20 O -0.53 -8.51 16.59 5.30 0.09 -8.42 16 21 C 0.01 0.18 7.13 -82.77 -0.59 -0.41 16 22 C -0.17 -1.75 10.81 -39.37 -0.43 -2.17 16 23 C 0.00 -0.02 11.33 -17.17 -0.19 -0.21 16 24 N -0.35 -3.25 3.56 -66.62 -0.24 -3.49 16 25 C 0.50 3.27 6.24 59.85 0.37 3.64 16 26 F -0.17 -1.37 17.46 2.25 0.04 -1.33 16 27 F -0.18 -1.19 17.46 2.25 0.04 -1.15 16 28 N -0.25 -2.79 11.67 33.42 0.39 -2.40 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.35 5.82 7.28 -39.29 -0.29 5.53 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.40 4.32 7.88 -40.82 -0.32 4.00 16 40 H 0.17 1.53 8.06 -52.48 -0.42 1.11 16 41 H 0.19 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.17 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -35.10 379.67 -5.39 -40.49 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -5.06 Total: 15.32 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: -1.15 Total: 13.08 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.12 Total: -63.88 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.18 Total: -24.30 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.08 Total: -2.48 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.10 -5.39 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732957789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.094 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds