Wall clock time and date at job start Wed Apr 1 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47241 * 2 1 4 4 C 1.52999 * 109.46648 * 240.00302 * 2 1 3 5 5 N 1.46907 * 109.47056 * 185.00098 * 4 2 1 6 6 C 1.46897 * 111.00022 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47110 * 180.02562 * 6 5 4 8 8 O 1.21294 * 120.00174 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00265 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00500 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99619 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00173 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00451 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99775 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.46937 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46942 * 120.00320 * 14 12 10 17 17 H 1.48502 * 109.46868 * 239.99933 * 14 12 10 18 18 N 1.46502 * 109.47019 * 120.00741 * 2 1 3 19 19 C 1.34778 * 119.99798 * 274.99536 * 18 2 1 20 20 O 1.21577 * 119.99990 * 359.97438 * 19 18 2 21 21 C 1.47709 * 120.00105 * 180.02562 * 19 18 2 22 22 C 1.41494 * 126.51988 * 179.97438 * 21 19 18 23 23 C 1.35367 * 105.50551 * 179.97438 * 22 21 19 24 24 N 1.35032 * 107.22544 * 0.26675 * 23 22 21 25 25 C 1.46499 * 124.88387 * 179.70874 * 24 23 22 26 26 F 1.39904 * 109.47306 * 300.00242 * 25 24 23 27 27 F 1.39902 * 109.46977 * 59.99864 * 25 24 23 28 28 N 1.28473 * 110.23186 * 359.54546 * 24 23 22 29 29 H 1.08991 * 109.47536 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46539 * 299.99804 * 1 2 3 31 31 H 1.08998 * 109.47175 * 59.98898 * 1 2 3 32 32 H 1.09001 * 109.47627 * 305.00027 * 4 2 1 33 33 H 1.09005 * 109.47176 * 65.00145 * 4 2 1 34 34 H 1.00903 * 110.99966 * 56.04796 * 5 4 2 35 35 H 1.09006 * 109.47433 * 299.99886 * 6 5 4 36 36 H 1.09002 * 109.47313 * 59.99721 * 6 5 4 37 37 H 0.97006 * 120.00019 * 0.02562 * 9 7 6 38 38 H 0.96988 * 120.00344 * 179.97438 * 13 12 10 39 39 H 0.96993 * 120.00185 * 94.99686 * 18 2 1 40 40 H 1.08008 * 127.24794 * 359.95867 * 22 21 19 41 41 H 1.08002 * 126.38433 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47126 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8267 -1.1906 6 6 4.0302 -1.5148 -2.3769 7 6 5.5315 -1.6045 -2.2810 8 8 6.1064 -1.1412 -1.3187 9 7 6.2352 -2.2004 -3.2639 10 6 7.6010 -2.2815 -3.1769 11 1 8.1130 -1.8682 -2.3204 12 6 8.3265 -2.8954 -4.1905 13 7 7.7036 -3.3978 -5.2329 14 14 10.1875 -3.0065 -4.0715 15 1 10.6416 -2.3704 -2.8089 16 1 10.5999 -4.4331 -4.0828 17 1 10.8002 -2.3050 -5.2282 18 7 2.0183 -0.6908 1.1961 19 6 2.1471 -0.0185 2.3571 20 8 1.8585 1.1612 2.4117 21 6 2.6400 -0.7148 3.5630 22 6 2.8278 -0.1471 4.8454 23 6 3.2887 -1.1547 5.6231 24 7 3.3746 -2.2541 4.8439 25 6 3.8383 -3.5679 5.2968 26 9 5.1514 -3.4622 5.7678 27 9 3.0091 -4.0256 6.3265 28 7 2.9880 -1.9832 3.6491 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.6053 -1.7198 -1.2953 33 1 1.7515 -0.1582 -2.1370 34 1 3.7995 -1.2885 -0.3435 35 1 3.6094 -2.5189 -2.4312 36 1 3.7556 -0.9570 -3.2722 37 1 5.7754 -2.5713 -4.0333 38 1 8.2101 -3.8260 -5.9406 39 1 2.2490 -1.6319 1.1525 40 1 2.6427 0.8750 5.1414 41 1 3.5448 -1.0899 6.6703 42 1 3.8066 -4.2711 4.4646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732957789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:28 Heat of formation + Delta-G solvation = -106.780565 kcal Electronic energy + Delta-G solvation = -29426.044461 eV Core-core repulsion = 24692.108933 eV Total energy + Delta-G solvation = -4733.935527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.49518 -48.58102 -43.79314 -40.77916 -40.10367 -37.87383 -36.03796 -35.12585 -34.12935 -33.25976 -32.42352 -31.56691 -28.97252 -27.77508 -26.70421 -24.99721 -24.41069 -22.75903 -22.05705 -21.34855 -21.06044 -19.92415 -19.79647 -19.07262 -18.85541 -18.34045 -17.78436 -17.29933 -16.92357 -16.73179 -16.37570 -16.07648 -15.77829 -15.64832 -15.38594 -15.32085 -15.14943 -15.03141 -14.89620 -14.69964 -14.39679 -14.29398 -13.98897 -13.56562 -13.35260 -13.21094 -13.08902 -13.01839 -12.79522 -12.68536 -12.40799 -12.29511 -12.12486 -11.93467 -11.51824 -11.33385 -10.79701 -10.40626 -10.37242 -10.14207 -10.01368 -9.32100 -8.47183 -5.95653 0.21197 0.63569 0.93389 1.36008 1.41533 1.55486 2.03313 2.05648 2.25505 2.28841 2.41567 2.88697 2.99100 3.20352 3.44002 3.45604 3.52502 3.65613 3.84442 4.00291 4.21112 4.27916 4.37753 4.47897 4.51089 4.57467 4.60273 4.69985 4.75948 4.80729 5.02502 5.10264 5.29904 5.36206 5.40921 5.45627 5.87226 6.09389 6.26915 6.35387 6.58155 6.60423 7.07117 7.12963 7.56556 8.12493 8.70407 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.008694 B = 0.002624 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3219.726791 B =10667.377525 C =13111.771492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.074 0.926 4 C 0.056 3.944 5 N -0.688 5.688 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.626 6.626 9 N -0.572 5.572 10 C -0.333 4.333 11 H 0.076 0.924 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.275 1.275 16 H -0.269 1.269 17 H -0.271 1.271 18 N -0.700 5.700 19 C 0.605 3.395 20 O -0.562 6.562 21 C -0.013 4.013 22 C -0.186 4.186 23 C 0.009 3.991 24 N -0.349 5.349 25 C 0.497 3.503 26 F -0.179 7.179 27 F -0.174 7.174 28 N -0.253 5.253 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.341 0.659 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.410 0.590 40 H 0.177 0.823 41 H 0.221 0.779 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.206 -2.601 17.629 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.092 0.908 4 C -0.073 4.073 5 N -0.321 5.321 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.210 5.210 10 C -0.463 4.463 11 H 0.094 0.906 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.200 1.200 16 H -0.194 1.194 17 H -0.196 1.196 18 N -0.351 5.351 19 C 0.389 3.611 20 O -0.439 6.439 21 C -0.176 4.176 22 C -0.213 4.213 23 C -0.131 4.131 24 N -0.146 5.146 25 C 0.365 3.635 26 F -0.160 7.160 27 F -0.156 7.156 28 N -0.087 5.087 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.160 0.840 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.246 0.754 40 H 0.194 0.806 41 H 0.238 0.762 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.709 -2.071 17.312 23.468 hybrid contribution 0.790 -0.698 0.451 1.146 sum -14.919 -2.770 17.763 23.362 Atomic orbital electron populations 1.22071 0.92670 1.03253 1.03057 1.21138 0.95103 0.97116 0.82644 0.90819 1.22390 0.86096 1.00666 0.98141 1.59997 1.10366 1.57625 1.04152 1.21560 0.90098 0.99217 0.95814 1.20965 0.90798 0.82109 0.83796 1.90507 1.72901 1.52823 1.35003 1.41924 1.06813 1.51618 1.20615 1.19673 0.83156 1.36831 1.06645 0.90600 1.26000 1.04768 0.95829 0.94510 1.69664 1.38174 1.38556 1.09620 0.84904 0.77057 0.78360 0.78214 1.20010 1.19405 1.19631 1.45859 1.65766 1.14446 1.09021 1.16969 0.76774 0.85294 0.82025 1.90776 1.52034 1.16021 1.85023 1.22172 1.07630 0.91067 0.96699 1.22129 1.06112 1.01986 0.91065 1.23520 1.03317 0.85566 1.00729 1.46854 1.49022 1.11409 1.07308 1.21670 0.71754 0.81848 0.88266 1.93163 1.36640 1.95784 1.90439 1.93156 1.72263 1.87363 1.62773 1.73407 1.15472 1.17284 1.02509 0.90892 0.93271 0.89391 0.92264 0.87718 0.83998 0.90916 0.87375 0.76866 0.91270 0.75425 0.80560 0.76232 0.77970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.48 71.98 0.68 -1.83 16 2 C 0.14 3.16 2.88 44.99 0.13 3.29 16 3 H 0.07 2.04 7.58 -2.39 -0.02 2.03 16 4 C 0.06 1.15 5.30 86.30 0.46 1.61 16 5 N -0.69 -21.11 6.12 -517.91 -3.17 -24.28 16 6 C 0.07 2.13 6.17 85.56 0.53 2.66 16 7 C 0.44 20.63 7.82 87.66 0.69 21.31 16 8 O -0.63 -35.19 15.78 -3.07 -0.05 -35.24 16 9 N -0.57 -29.14 5.29 -306.98 -1.62 -30.77 16 10 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 11 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 13 N -0.92 -49.18 13.05 21.66 0.28 -48.89 16 14 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 15 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 18 N -0.70 -16.47 4.35 -445.52 -1.94 -18.41 16 19 C 0.60 17.05 7.79 86.75 0.68 17.73 16 20 O -0.56 -19.07 16.59 -3.96 -0.07 -19.14 16 21 C -0.01 -0.32 7.13 42.45 0.30 -0.02 16 22 C -0.19 -3.88 10.81 22.41 0.24 -3.64 16 23 C 0.01 0.14 11.33 83.54 0.95 1.08 16 24 N -0.35 -6.13 3.56 -364.69 -1.30 -7.43 16 25 C 0.50 5.68 6.24 127.77 0.80 6.48 16 26 F -0.18 -2.59 17.46 44.97 0.79 -1.81 16 27 F -0.17 -2.05 17.46 44.97 0.79 -1.26 16 28 N -0.25 -5.59 11.67 -48.18 -0.56 -6.16 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.34 11.25 7.28 -89.69 -0.65 10.60 16 35 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.40 19.02 7.90 -92.70 -0.73 18.29 16 38 H 0.28 13.86 8.31 -92.72 -0.77 13.09 16 39 H 0.41 8.55 7.88 -92.71 -0.73 7.82 16 40 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.22 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.20 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.82 379.67 0.90 -76.92 By element: Atomic # 1 Polarization: 42.13 SS G_CDS: -1.01 Total: 41.13 kcal Atomic # 6 Polarization: 23.64 SS G_CDS: 6.73 Total: 30.37 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -8.31 Total: -135.93 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -0.11 Total: -54.37 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 1.57 Total: -3.07 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -77.82 0.90 -76.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732957789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.856 kcal (2) G-P(sol) polarization free energy of solvation -77.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds