Wall clock time and date at job start Wed Apr 1 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47140 * 90.00198 * 14 12 10 16 16 H 1.48503 * 109.46972 * 210.00225 * 14 12 10 17 17 H 1.48504 * 109.47241 * 330.00124 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21563 * 120.00432 * 0.02562 * 19 18 2 21 21 C 1.47712 * 119.99779 * 180.02562 * 19 18 2 22 22 C 1.41500 * 126.51820 * 179.71298 * 21 19 18 23 23 C 1.35376 * 105.50122 * 179.90276 * 22 21 19 24 24 C 1.50699 * 126.38169 * 180.08894 * 23 22 21 25 25 F 1.39904 * 109.46571 * 210.29182 * 24 23 22 26 26 F 1.39898 * 109.47348 * 330.29433 * 24 23 22 27 27 N 1.35032 * 107.22582 * 0.35497 * 23 22 21 28 28 H 0.97005 * 124.88105 * 179.76434 * 27 23 22 29 29 N 1.28466 * 110.23518 * 359.76890 * 27 23 22 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 34 34 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 35 35 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 36 36 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 37 37 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 38 38 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 39 39 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 40 40 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 41 41 H 1.08001 * 127.25315 * 0.02562 * 22 21 19 42 42 H 1.08998 * 109.47054 * 90.29979 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.7945 -1.8027 4.7050 16 1 10.6580 -4.2228 4.7768 17 1 10.5908 -3.0673 2.6458 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8585 1.1613 -2.4116 21 6 2.6391 -0.7147 -3.5632 22 6 2.8209 -0.1485 -4.8472 23 6 3.2859 -1.1550 -5.6239 24 6 3.6409 -1.0651 -7.0858 25 9 3.4147 -2.3029 -7.6974 26 9 2.8476 -0.0898 -7.6993 27 7 3.3666 -2.2558 -4.8461 28 1 3.6681 -3.1272 -5.1475 29 7 2.9866 -1.9833 -3.6496 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -0.1583 2.1369 34 1 1.6053 -1.7198 1.2952 35 1 3.7996 -1.2884 0.3435 36 1 3.7556 -0.9587 3.2721 37 1 3.6093 -2.5199 2.4296 38 1 5.7754 -2.5722 4.0326 39 1 8.2103 -3.8257 5.9405 40 1 2.2491 -1.6318 -1.1525 41 1 2.6309 0.8723 -5.1444 42 1 4.6921 -0.7959 -7.1884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733014678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:23 Heat of formation + Delta-G solvation = -97.376897 kcal Electronic energy + Delta-G solvation = -29127.567243 eV Core-core repulsion = 24394.039489 eV Total energy + Delta-G solvation = -4733.527754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.63718 -47.66267 -43.15964 -39.73884 -38.29879 -36.71067 -34.28795 -33.66727 -32.69772 -32.28602 -31.23818 -30.81228 -27.60156 -26.72513 -25.18158 -24.61239 -23.21449 -21.89593 -21.13495 -20.37822 -19.36506 -19.19246 -18.20358 -17.92445 -17.63850 -17.52841 -16.47824 -16.12604 -16.04873 -15.69106 -15.29546 -14.91485 -14.53984 -14.49895 -14.32153 -14.23027 -14.09810 -13.96726 -13.87697 -13.52015 -13.45859 -13.06935 -12.65552 -12.47989 -12.12693 -11.94812 -11.74575 -11.61640 -11.47670 -11.41994 -11.08003 -10.97517 -10.40642 -10.27486 -10.22901 -9.92076 -9.74983 -9.51936 -9.19539 -8.47446 -8.08817 -7.96937 -6.42813 -3.83538 1.09723 1.47248 2.14401 2.81444 3.16889 3.18003 3.23399 3.25446 3.31103 3.51777 3.87096 3.89908 4.04122 4.13629 4.24454 4.28492 4.75698 4.88537 4.96194 5.01658 5.17920 5.20971 5.25616 5.27154 5.44318 5.56837 5.62892 5.76760 5.80774 5.93044 5.96860 6.07449 6.25371 6.31736 6.40193 7.14827 7.17407 7.45437 7.54190 7.60388 8.05306 8.06757 8.60419 9.16985 9.53339 10.04987 10.74964 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.002249 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.939712 B =12447.161630 C =14625.496452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.101 0.899 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 N -0.708 5.708 19 C 0.610 3.390 20 O -0.527 6.527 21 C -0.009 4.009 22 C -0.126 4.126 23 C -0.077 4.077 24 C 0.352 3.648 25 F -0.199 7.199 26 F -0.183 7.183 27 N -0.357 5.357 28 H 0.452 0.548 29 N -0.229 5.229 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.033 0.967 35 H 0.348 0.652 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.404 0.596 41 H 0.174 0.826 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.159 0.898 -19.139 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.119 0.881 4 C -0.080 4.080 5 N -0.301 5.301 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.195 1.195 18 N -0.359 5.359 19 C 0.393 3.607 20 O -0.401 6.401 21 C -0.169 4.169 22 C -0.155 4.155 23 C -0.203 4.203 24 C 0.297 3.703 25 F -0.180 7.180 26 F -0.165 7.165 27 N -0.073 5.073 28 H 0.298 0.702 29 N -0.066 5.066 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.051 0.949 35 H 0.168 0.832 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.239 0.761 41 H 0.191 0.809 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.749 1.670 -18.750 23.310 hybrid contribution 0.567 -1.620 -0.280 1.739 sum -13.182 0.050 -19.029 23.149 Atomic orbital electron populations 1.22158 0.94814 1.02201 1.02896 1.21119 0.93568 0.98580 0.82770 0.88076 1.22311 0.88896 0.99056 0.97723 1.60032 1.07460 1.57536 1.05036 1.21692 0.95128 0.96968 0.94480 1.19807 0.88095 0.84240 0.85299 1.90532 1.71127 1.51435 1.33518 1.41858 1.07401 1.50896 1.19910 1.19697 0.81524 1.35043 1.06573 0.87965 1.25261 1.00683 0.96805 0.95220 1.69612 1.36681 1.38669 1.09378 0.85858 0.82222 0.77651 0.78557 1.20364 1.20941 1.19455 1.45844 1.66518 1.14267 1.09285 1.16682 0.77174 0.85571 0.81252 1.90808 1.50308 1.14623 1.84385 1.22046 1.08108 0.90590 0.96184 1.21576 1.02232 1.00669 0.90996 1.21827 1.12638 0.90356 0.95470 1.19684 0.95661 0.73118 0.81860 1.93032 1.96282 1.44153 1.84525 1.93065 1.77361 1.62448 1.83580 1.43134 1.47152 1.11567 1.05439 0.70245 1.73646 1.13886 1.17285 1.01807 0.92479 0.91178 0.91787 0.89265 0.94898 0.83164 0.89418 0.93839 0.77458 0.91879 0.76113 0.80897 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.14 1.64 2.88 -67.93 -0.20 1.45 16 3 H 0.10 1.38 7.58 -51.93 -0.39 0.98 16 4 C 0.05 0.58 5.30 -3.82 -0.02 0.56 16 5 N -0.67 -10.66 6.12 -115.06 -0.70 -11.37 16 6 C 0.05 0.87 6.17 -4.98 -0.03 0.83 16 7 C 0.44 10.40 7.82 -10.99 -0.09 10.32 16 8 O -0.58 -15.94 15.78 5.55 0.09 -15.86 16 9 N -0.56 -14.27 5.29 -10.97 -0.06 -14.33 16 10 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 11 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 14 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 N -0.71 -8.39 4.35 -54.79 -0.24 -8.63 16 19 C 0.61 8.29 7.79 -12.39 -0.10 8.20 16 20 O -0.53 -8.52 16.59 5.31 0.09 -8.43 16 21 C -0.01 -0.11 7.13 -82.76 -0.59 -0.70 16 22 C -0.13 -1.29 10.41 -39.36 -0.41 -1.70 16 23 C -0.08 -0.61 6.84 -82.21 -0.56 -1.17 16 24 C 0.35 1.94 5.83 36.01 0.21 2.15 16 25 F -0.20 -1.27 17.30 2.25 0.04 -1.23 16 26 F -0.18 -1.37 17.05 2.25 0.04 -1.33 16 27 N -0.36 -2.83 6.79 33.50 0.23 -2.60 16 28 H 0.45 2.14 8.96 -190.44 -1.71 0.43 16 29 N -0.23 -2.47 11.92 33.42 0.40 -2.07 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.35 5.83 7.28 -39.29 -0.29 5.54 16 36 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.40 4.37 7.88 -40.82 -0.32 4.05 16 41 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -35.23 378.20 -6.74 -41.97 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -6.35 Total: 15.13 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -1.67 Total: 10.79 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.35 Total: -62.75 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.18 Total: -24.29 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.08 Total: -2.56 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.23 -6.74 -41.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733014678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.406 kcal (2) G-P(sol) polarization free energy of solvation -35.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds