Wall clock time and date at job start Wed Apr 1 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46905 * 109.47325 * 175.00015 * 4 2 1 6 6 C 1.46899 * 111.00405 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47325 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99687 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00001 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99837 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00009 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00039 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47140 * 90.00198 * 14 12 10 16 16 H 1.48503 * 109.46972 * 210.00225 * 14 12 10 17 17 H 1.48504 * 109.47241 * 330.00124 * 14 12 10 18 18 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 19 19 C 1.34769 * 119.99686 * 84.99974 * 18 2 1 20 20 O 1.21563 * 120.00432 * 0.02562 * 19 18 2 21 21 C 1.47712 * 119.99779 * 180.02562 * 19 18 2 22 22 C 1.41500 * 126.51820 * 179.71298 * 21 19 18 23 23 C 1.35376 * 105.50122 * 179.90276 * 22 21 19 24 24 C 1.50699 * 126.38169 * 180.08894 * 23 22 21 25 25 F 1.39904 * 109.46571 * 210.29182 * 24 23 22 26 26 F 1.39898 * 109.47348 * 330.29433 * 24 23 22 27 27 N 1.35032 * 107.22582 * 0.35497 * 23 22 21 28 28 H 0.97005 * 124.88105 * 179.76434 * 27 23 22 29 29 N 1.28466 * 110.23518 * 359.76890 * 27 23 22 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.08998 * 109.47192 * 294.99969 * 4 2 1 34 34 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 35 35 H 1.00899 * 110.99764 * 303.95647 * 5 4 2 36 36 H 1.09006 * 109.46590 * 299.99952 * 6 5 4 37 37 H 1.08996 * 109.46962 * 59.99644 * 6 5 4 38 38 H 0.96996 * 120.00362 * 0.02562 * 9 7 6 39 39 H 0.97000 * 119.99614 * 179.97438 * 13 12 10 40 40 H 0.97000 * 119.99634 * 265.00306 * 18 2 1 41 41 H 1.08001 * 127.25315 * 0.02562 * 22 21 19 42 42 H 1.08998 * 109.47054 * 90.29979 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6044 2.2810 8 8 6.1066 -1.1395 1.3195 9 7 6.2353 -2.2001 3.2640 10 6 7.6012 -2.2801 3.1775 11 1 8.1133 -1.8654 2.3218 12 6 8.3268 -2.8938 4.1912 13 7 7.7038 -3.3970 5.2331 14 14 10.1879 -3.0022 4.0737 15 1 10.7945 -1.8027 4.7050 16 1 10.6580 -4.2228 4.7768 17 1 10.5908 -3.0673 2.6458 18 7 2.0184 -0.6906 -1.1962 19 6 2.1472 -0.0183 -2.3570 20 8 1.8585 1.1613 -2.4116 21 6 2.6391 -0.7147 -3.5632 22 6 2.8209 -0.1485 -4.8472 23 6 3.2859 -1.1550 -5.6239 24 6 3.6409 -1.0651 -7.0858 25 9 3.4147 -2.3029 -7.6974 26 9 2.8476 -0.0898 -7.6993 27 7 3.3666 -2.2558 -4.8461 28 1 3.6681 -3.1272 -5.1475 29 7 2.9866 -1.9833 -3.6496 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -0.1583 2.1369 34 1 1.6053 -1.7198 1.2952 35 1 3.7996 -1.2884 0.3435 36 1 3.7556 -0.9587 3.2721 37 1 3.6093 -2.5199 2.4296 38 1 5.7754 -2.5722 4.0326 39 1 8.2103 -3.8257 5.9405 40 1 2.2491 -1.6318 -1.1525 41 1 2.6309 0.8723 -5.1444 42 1 4.6921 -0.7959 -7.1884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733014678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:23 Heat of formation + Delta-G solvation = -126.456384 kcal Electronic energy + Delta-G solvation = -29128.828224 eV Core-core repulsion = 24394.039489 eV Total energy + Delta-G solvation = -4734.788735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.13363 -48.16753 -43.91824 -40.77693 -40.10704 -37.87327 -36.04030 -35.12944 -33.54742 -33.24607 -33.00606 -31.73842 -28.97610 -27.29163 -26.73328 -25.68171 -24.54163 -22.60495 -22.04986 -21.35183 -21.05681 -19.96941 -19.88025 -18.67131 -18.50805 -18.14828 -17.82443 -17.25030 -16.97759 -16.83476 -16.42222 -16.33573 -16.08324 -15.69128 -15.39992 -15.17984 -15.03868 -15.03392 -14.85460 -14.49183 -14.33842 -14.09102 -13.96551 -13.56232 -13.35933 -13.09522 -13.02582 -12.80191 -12.72194 -12.65336 -12.42371 -12.17187 -12.12689 -11.93896 -11.51538 -11.33660 -10.73857 -10.48276 -10.37473 -10.13616 -10.01930 -9.33024 -8.47239 -5.95830 0.29409 0.66832 1.37402 1.41248 1.50659 1.53730 1.99540 2.05210 2.23086 2.28560 2.59997 2.89102 3.08900 3.13416 3.20211 3.48218 3.52544 3.83979 3.88003 4.08164 4.19532 4.21166 4.27455 4.37489 4.50450 4.51146 4.59565 4.69075 4.75268 4.79935 5.01179 5.07844 5.28991 5.40345 5.44753 5.73713 5.86638 6.08729 6.30310 6.34958 6.59767 6.60066 7.07606 7.12396 7.56102 8.11873 8.70095 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.002249 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.939712 B =12447.161630 C =14625.496452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.074 0.926 4 C 0.056 3.944 5 N -0.687 5.687 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.625 6.625 9 N -0.572 5.572 10 C -0.334 4.334 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.992 3.008 15 H -0.272 1.272 16 H -0.269 1.269 17 H -0.273 1.273 18 N -0.701 5.701 19 C 0.604 3.396 20 O -0.563 6.563 21 C -0.035 4.035 22 C -0.147 4.147 23 C -0.060 4.060 24 C 0.356 3.644 25 F -0.202 7.202 26 F -0.194 7.194 27 N -0.342 5.342 28 H 0.466 0.534 29 N -0.240 5.240 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.341 0.659 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.409 0.591 41 H 0.175 0.825 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.428 -0.254 -19.210 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.093 0.907 4 C -0.073 4.073 5 N -0.320 5.320 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.210 5.210 10 C -0.463 4.463 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.194 1.194 17 H -0.198 1.198 18 N -0.352 5.352 19 C 0.389 3.611 20 O -0.440 6.440 21 C -0.194 4.194 22 C -0.175 4.175 23 C -0.188 4.188 24 C 0.301 3.699 25 F -0.183 7.183 26 F -0.176 7.176 27 N -0.061 5.061 28 H 0.315 0.685 29 N -0.078 5.078 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.160 0.840 36 H 0.126 0.874 37 H 0.090 0.910 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.245 0.755 41 H 0.193 0.807 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.051 0.477 -18.789 23.466 hybrid contribution 0.622 -1.283 -0.305 1.458 sum -13.429 -0.806 -19.093 23.357 Atomic orbital electron populations 1.22075 0.92753 1.03203 1.03061 1.21131 0.95051 0.97148 0.82655 0.90738 1.22389 0.86134 1.00624 0.98171 1.60015 1.10330 1.57541 1.04161 1.21562 0.90152 0.99171 0.95846 1.20949 0.90777 0.82151 0.83807 1.90501 1.72887 1.52776 1.35023 1.41921 1.06832 1.51580 1.20645 1.19639 0.83116 1.36866 1.06709 0.90527 1.26024 1.04853 0.95830 0.94523 1.69667 1.38248 1.38477 1.09626 0.84947 0.76942 0.78199 0.78366 1.19758 1.19410 1.19787 1.45849 1.65857 1.14432 1.09044 1.16964 0.76762 0.85311 0.82070 1.90772 1.52114 1.16072 1.85075 1.21954 1.09707 0.91357 0.96346 1.21719 1.03380 1.01554 0.90854 1.22146 1.10660 0.89399 0.96554 1.20093 0.97270 0.72672 0.79872 1.93030 1.96421 1.44456 1.84369 1.93046 1.77988 1.62933 1.83583 1.43217 1.45812 1.12322 1.04723 0.68506 1.73578 1.14390 1.16753 1.03113 0.90979 0.89361 0.93285 0.87696 0.92373 0.83994 0.87374 0.91003 0.76877 0.91276 0.75463 0.80723 0.80222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.48 71.98 0.68 -1.92 16 2 C 0.14 3.21 2.88 44.99 0.13 3.34 16 3 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 4 C 0.06 1.17 5.30 86.30 0.46 1.62 16 5 N -0.69 -21.22 6.12 -517.93 -3.17 -24.39 16 6 C 0.06 2.14 6.17 85.56 0.53 2.66 16 7 C 0.44 20.66 7.82 87.66 0.69 21.34 16 8 O -0.63 -35.07 15.78 -3.07 -0.05 -35.11 16 9 N -0.57 -29.21 5.29 -307.00 -1.62 -30.83 16 10 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 11 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -49.26 13.05 21.66 0.28 -48.97 16 14 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 N -0.70 -16.71 4.35 -445.54 -1.94 -18.65 16 19 C 0.60 17.08 7.79 86.75 0.68 17.76 16 20 O -0.56 -19.19 16.59 -3.92 -0.06 -19.25 16 21 C -0.03 -0.86 7.13 42.46 0.30 -0.56 16 22 C -0.15 -3.03 10.41 22.41 0.23 -2.79 16 23 C -0.06 -0.89 6.84 41.41 0.28 -0.60 16 24 C 0.36 3.18 5.83 71.24 0.42 3.60 16 25 F -0.20 -2.15 17.30 44.97 0.78 -1.37 16 26 F -0.19 -2.63 17.05 44.97 0.77 -1.87 16 27 N -0.34 -5.05 6.79 -47.92 -0.33 -5.38 16 28 H 0.47 3.68 8.96 -219.99 -1.97 1.71 16 29 N -0.24 -5.11 11.92 -48.17 -0.57 -5.68 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.34 11.32 7.28 -89.69 -0.65 10.66 16 36 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 39 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 40 H 0.41 8.75 7.88 -92.71 -0.73 8.02 16 41 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16 42 H 0.18 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -78.29 378.20 -1.17 -79.46 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -2.96 Total: 41.11 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: 5.67 Total: 26.11 kcal Atomic # 7 Polarization: -126.56 SS G_CDS: -7.35 Total: -133.91 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -0.11 Total: -54.37 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 1.54 Total: -3.24 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -78.29 -1.17 -79.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733014678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.999 kcal (2) G-P(sol) polarization free energy of solvation -78.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds