Wall clock time and date at job start Wed Apr 1 2020 03:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00502 * 2 1 4 4 C 1.53004 * 109.47026 * 270.00064 * 3 2 1 5 5 N 1.46895 * 109.47002 * 179.97438 * 4 3 2 6 6 C 1.46900 * 111.00314 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47499 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99764 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00116 * 180.02562 * 7 6 5 10 10 C 1.37086 * 120.00192 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00065 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00577 * 180.02562 * 10 9 7 13 13 N 1.31406 * 120.00681 * 179.97438 * 12 10 9 14 14 Si 1.86809 * 119.99348 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46921 * 90.00479 * 14 12 10 16 16 H 1.48500 * 109.46958 * 209.99935 * 14 12 10 17 17 H 1.48490 * 109.47214 * 330.00176 * 14 12 10 18 18 C 1.34780 * 119.99500 * 180.02562 * 2 1 3 19 19 O 1.21603 * 119.99559 * 181.97185 * 18 2 1 20 20 C 1.47427 * 120.00239 * 1.97386 * 18 2 1 21 21 C 1.41290 * 126.41524 * 353.79786 * 20 18 2 22 22 N 1.30449 * 108.02212 * 179.76283 * 21 20 18 23 23 N 1.39930 * 108.89674 * 0.40850 * 22 21 20 24 24 C 1.46504 * 125.75260 * 179.84592 * 23 22 21 25 25 F 1.39899 * 109.47295 * 329.69248 * 24 23 22 26 26 F 1.39902 * 109.46928 * 209.69289 * 24 23 22 27 27 C 1.34257 * 108.49244 * 359.58570 * 23 22 21 28 28 H 1.08996 * 109.47208 * 240.33680 * 1 2 3 29 29 H 1.09003 * 109.46953 * 0.33448 * 1 2 3 30 30 H 1.08998 * 109.47261 * 120.33461 * 1 2 3 31 31 H 1.08999 * 109.46489 * 29.99725 * 3 2 1 32 32 H 1.08990 * 109.47165 * 149.99799 * 3 2 1 33 33 H 1.08991 * 109.47331 * 299.99863 * 4 3 2 34 34 H 1.09003 * 109.47096 * 59.99929 * 4 3 2 35 35 H 1.00904 * 110.99732 * 56.04902 * 5 4 3 36 36 H 1.09003 * 109.46767 * 300.00449 * 6 5 4 37 37 H 1.09001 * 109.46953 * 60.00165 * 6 5 4 38 38 H 0.97006 * 119.99728 * 0.02562 * 9 7 6 39 39 H 0.96998 * 120.00211 * 179.97438 * 13 12 10 40 40 H 1.08003 * 125.98698 * 0.02581 * 21 20 18 41 41 H 1.08995 * 109.47220 * 89.69412 * 24 23 22 42 42 H 1.08002 * 126.28874 * 180.22344 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1867 2.9827 -1.4425 6 6 3.4505 3.4384 -2.8139 7 6 4.2038 4.7429 -2.7737 8 8 4.4929 5.2436 -1.7075 9 7 4.5562 5.3533 -3.9225 10 6 5.2419 6.5397 -3.8860 11 1 5.5002 6.9852 -2.9366 12 6 5.6049 7.1693 -5.0703 13 7 6.2617 8.3069 -5.0353 14 14 5.1588 6.3985 -6.7124 15 1 3.8282 6.8945 -7.1469 16 1 6.1796 6.7673 -7.7259 17 1 5.1141 4.9211 -6.5699 18 6 2.1388 -1.1673 -0.0005 19 8 3.3543 -1.1676 0.0357 20 6 1.4023 -2.4436 -0.0451 21 6 0.0010 -2.6065 0.0331 22 7 -0.2622 -3.8817 -0.0469 23 7 0.9408 -4.5859 -0.1687 24 6 1.0735 -6.0405 -0.2817 25 9 0.0228 -6.6594 0.4040 26 9 2.2933 -6.4420 0.2735 27 6 1.9526 -3.7034 -0.1704 28 1 -0.3633 -0.5086 0.8930 29 1 -0.3633 1.0277 -0.0060 30 1 -0.3634 -0.5190 -0.8869 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1382 0.5138 33 1 3.0416 0.9507 -1.9564 34 1 1.5002 1.8407 -1.9564 35 1 4.0442 2.9054 -0.9163 36 1 4.0470 2.6907 -3.3368 37 1 2.5052 3.5802 -3.3378 38 1 4.3246 4.9530 -4.7753 39 1 6.5154 8.7462 -5.8621 40 1 -0.7253 -1.8138 0.1364 41 1 1.0406 -6.3278 -1.3326 42 1 3.0039 -3.9363 -0.2542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753245981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:46 Heat of formation + Delta-G solvation = -81.445616 kcal Electronic energy + Delta-G solvation = -28718.455905 eV Core-core repulsion = 23985.618983 eV Total energy + Delta-G solvation = -4732.836922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.40785 -48.53674 -42.60255 -40.55594 -40.24098 -37.48351 -36.32976 -35.78934 -34.02541 -33.74072 -31.86719 -30.82697 -28.48382 -27.62381 -27.09610 -25.50904 -23.81640 -22.73896 -22.44146 -21.30831 -20.72768 -20.25287 -19.46838 -19.14730 -18.56366 -17.87369 -17.44869 -17.27917 -17.05132 -16.64588 -16.54562 -16.27917 -15.71327 -15.51955 -15.37395 -15.29871 -14.98302 -14.87641 -14.75888 -14.69342 -14.38834 -14.23809 -14.05602 -13.95439 -13.78212 -13.43770 -13.29399 -12.97016 -12.73767 -12.52937 -12.40871 -12.33816 -11.99916 -11.97395 -11.50985 -11.03961 -10.99028 -10.47079 -10.24624 -10.12938 -9.67198 -9.40213 -8.40801 -6.01908 0.17745 0.65529 1.00451 1.30948 1.36306 1.45229 1.89055 1.95345 2.23641 2.30002 2.51224 2.74880 2.86216 3.15206 3.46061 3.47374 3.52894 3.69207 3.79234 4.04559 4.14706 4.16492 4.18618 4.32785 4.40877 4.45266 4.52966 4.59407 4.66553 4.86559 4.94238 5.00331 5.17031 5.28532 5.46904 5.54239 5.88575 6.01032 6.22444 6.29052 6.37498 6.59705 6.88103 7.13848 7.39571 7.96028 8.76795 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.022556 B = 0.001614 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.050818 B =17347.513294 C =17790.876495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.604 5.604 3 C 0.123 3.877 4 C 0.055 3.945 5 N -0.680 5.680 6 C 0.064 3.936 7 C 0.448 3.552 8 O -0.613 6.613 9 N -0.590 5.590 10 C -0.330 4.330 11 H 0.055 0.945 12 C -0.015 4.015 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.233 1.233 18 C 0.588 3.412 19 O -0.589 6.589 20 C -0.295 4.295 21 C 0.086 3.914 22 N -0.300 5.300 23 N -0.432 5.432 24 C 0.505 3.495 25 F -0.184 7.184 26 F -0.184 7.184 27 C 0.147 3.853 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.022 0.978 34 H 0.093 0.907 35 H 0.343 0.657 36 H 0.070 0.930 37 H 0.120 0.880 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.245 0.755 41 H 0.209 0.791 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.818 -33.286 4.399 38.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.335 5.335 3 C -0.001 4.001 4 C -0.075 4.075 5 N -0.312 5.312 6 C -0.069 4.069 7 C 0.236 3.764 8 O -0.498 6.498 9 N -0.232 5.232 10 C -0.460 4.460 11 H 0.073 0.927 12 C -0.214 4.214 13 N -0.574 5.574 14 Si 0.786 3.214 15 H -0.179 1.179 16 H -0.201 1.201 17 H -0.156 1.156 18 C 0.378 3.622 19 O -0.470 6.470 20 C -0.309 4.309 21 C -0.103 4.103 22 N -0.118 5.118 23 N -0.220 5.220 24 C 0.373 3.627 25 F -0.165 7.165 26 F -0.165 7.165 27 C -0.002 4.002 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.111 0.889 35 H 0.161 0.839 36 H 0.088 0.912 37 H 0.138 0.862 38 H 0.226 0.774 39 H 0.089 0.911 40 H 0.260 0.740 41 H 0.225 0.775 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -19.394 -33.521 5.125 39.064 hybrid contribution 1.848 0.262 -0.776 2.021 sum -17.546 -33.259 4.348 37.854 Atomic orbital electron populations 1.22673 0.77050 1.05881 1.03005 1.47580 1.08536 1.04622 1.72767 1.21335 0.98092 0.84458 0.96189 1.22282 0.99116 0.88365 0.97697 1.60049 1.28325 1.30193 1.12648 1.21621 1.00987 0.92413 0.91862 1.20953 0.83412 0.88502 0.83536 1.90545 1.59521 1.68513 1.31194 1.42017 1.52226 1.21279 1.07662 1.19019 1.33272 0.98626 0.95048 0.92664 1.26127 0.96065 0.96168 1.03011 1.69802 1.39472 1.17979 1.30175 0.85355 0.79303 0.80200 0.76588 1.17916 1.20053 1.15598 1.17532 0.85939 0.83475 0.75210 1.90787 1.15317 1.87910 1.52992 1.20276 0.94417 0.93097 1.23121 1.25897 0.95426 0.94600 0.94346 1.77339 1.03406 1.06302 1.24764 1.50085 1.06096 1.07556 1.58293 1.22197 0.71114 0.72748 0.96596 1.93116 1.58450 1.81540 1.83370 1.93149 1.45358 1.89238 1.88781 1.23223 0.95873 0.88170 0.92903 0.89521 0.88070 0.89564 0.87622 0.91912 0.95964 0.88856 0.83883 0.91181 0.86219 0.77448 0.91125 0.73954 0.77451 0.77678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 8.55 127.77 1.09 1.43 16 2 N -0.60 -9.58 2.87 -850.68 -2.44 -12.02 16 3 C 0.12 2.40 5.65 86.38 0.49 2.89 16 4 C 0.06 1.19 6.01 86.31 0.52 1.71 16 5 N -0.68 -20.10 6.13 -517.94 -3.17 -23.28 16 6 C 0.06 1.96 6.17 85.56 0.53 2.49 16 7 C 0.45 20.43 7.82 87.66 0.69 21.12 16 8 O -0.61 -34.37 15.78 -3.06 -0.05 -34.42 16 9 N -0.59 -28.03 5.09 -307.00 -1.56 -29.59 16 10 C -0.33 -19.53 10.16 84.04 0.85 -18.67 16 11 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 12 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 13 N -0.93 -56.52 13.96 21.66 0.30 -56.22 16 14 Si 0.97 38.77 27.74 68.60 1.90 40.67 16 15 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 16 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 17 H -0.23 -7.88 6.52 99.48 0.65 -7.23 16 18 C 0.59 12.29 7.67 86.66 0.66 12.96 16 19 O -0.59 -17.44 16.47 -4.04 -0.07 -17.51 16 20 C -0.29 -4.64 6.04 -20.15 -0.12 -4.76 16 21 C 0.09 0.97 9.91 85.65 0.85 1.82 16 22 N -0.30 -4.32 12.32 -56.27 -0.69 -5.01 16 23 N -0.43 -5.26 3.94 -363.02 -1.43 -6.69 16 24 C 0.51 3.33 6.62 127.77 0.85 4.18 16 25 F -0.18 -2.12 17.35 44.97 0.78 -1.34 16 26 F -0.18 -1.64 17.00 44.97 0.76 -0.87 16 27 C 0.15 2.02 10.85 84.28 0.91 2.93 16 28 H 0.09 0.25 6.33 -2.39 -0.02 0.23 16 29 H 0.10 0.38 7.80 -2.39 -0.02 0.36 16 30 H 0.09 0.27 6.63 -2.39 -0.02 0.25 16 31 H 0.11 1.77 7.92 -2.39 -0.02 1.75 16 32 H 0.06 1.56 7.39 -2.39 -0.02 1.54 16 33 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.34 11.32 8.43 -89.69 -0.76 10.56 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.39 15.26 5.76 -92.70 -0.53 14.72 16 39 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 40 H 0.25 0.94 4.17 -2.91 -0.01 0.93 16 41 H 0.21 -0.66 8.14 -2.39 -0.02 -0.68 16 42 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -89.54 369.22 1.88 -87.66 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.24 Total: 30.90 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 7.79 Total: 27.72 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -9.00 Total: -132.82 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -0.11 Total: -51.93 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 1.54 Total: -2.21 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 1.90 Total: 40.67 kcal Total: -89.54 1.88 -87.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753245981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.219 kcal (2) G-P(sol) polarization free energy of solvation -89.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds