Wall clock time and date at job start Wed Apr 1 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46997 * 2 1 4 4 C 1.50702 * 109.47011 * 119.99228 * 2 1 3 5 5 H 1.08004 * 119.99961 * 120.00536 * 4 2 1 6 6 C 1.37874 * 120.00131 * 299.99984 * 4 2 1 7 7 N 1.31510 * 120.00076 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46951 * 60.00183 * 8 6 4 10 10 H 1.48503 * 109.47351 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47380 * 300.00505 * 8 6 4 12 12 C 1.50690 * 109.47372 * 239.99476 * 2 1 3 13 13 O 1.20830 * 120.00212 * 239.99802 * 12 2 1 14 14 O 1.34236 * 120.00125 * 59.99968 * 12 2 1 15 15 C 1.45200 * 117.00203 * 180.02562 * 14 12 2 16 16 C 1.50698 * 109.46996 * 179.97438 * 15 14 12 17 17 O 1.21253 * 119.99872 * 0.02562 * 16 15 14 18 18 C 1.47184 * 119.99620 * 179.97438 * 16 15 14 19 19 C 1.39886 * 120.14408 * 359.97438 * 18 16 15 20 20 C 1.37899 * 119.97133 * 180.02562 * 19 18 16 21 21 C 1.38305 * 120.25242 * 359.74151 * 20 19 18 22 22 C 1.38987 * 120.27446 * 0.51645 * 21 20 19 23 23 N 1.39960 * 119.98485 * 179.76462 * 22 21 20 24 24 C 1.46766 * 124.34877 * 354.01295 * 23 22 21 25 25 C 1.54483 * 105.47247 * 162.98449 * 24 23 22 26 26 C 1.54623 * 101.76338 * 25.41403 * 25 24 23 27 27 C 1.34419 * 124.34969 * 174.01056 * 23 22 21 28 28 O 1.21284 * 124.94268 * 0.67427 * 27 23 22 29 29 C 1.38568 * 120.02887 * 359.48542 * 22 21 20 30 30 H 1.09003 * 109.47292 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47448 * 300.00378 * 1 2 3 32 32 H 1.08996 * 109.47638 * 60.00608 * 1 2 3 33 33 H 0.97001 * 119.99974 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47171 * 59.99388 * 15 14 12 35 35 H 1.09001 * 109.46989 * 299.99983 * 15 14 12 36 36 H 1.08006 * 120.01008 * 0.02562 * 19 18 16 37 37 H 1.08004 * 119.87766 * 180.02562 * 20 19 18 38 38 H 1.07997 * 119.86141 * 180.26029 * 21 20 19 39 39 H 1.08998 * 110.24466 * 43.98411 * 24 23 22 40 40 H 1.08999 * 110.24276 * 281.98299 * 24 23 22 41 41 H 1.08996 * 110.96860 * 267.29486 * 25 24 23 42 42 H 1.08995 * 110.99681 * 143.55096 * 25 24 23 43 43 H 1.09003 * 110.48487 * 216.52388 * 26 25 24 44 44 H 1.09006 * 110.48289 * 93.88347 * 26 25 24 45 45 H 1.08006 * 120.12627 * 180.23383 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9427 0.8299 2.6033 8 14 2.3212 -1.1199 4.0081 9 1 3.8063 -1.1205 4.0083 10 1 1.8259 -0.4200 5.2206 11 1 1.8258 -2.5198 4.0080 12 6 2.0323 -0.7105 -1.2303 13 8 2.7270 -1.6928 -1.1194 14 8 1.7081 -0.2520 -2.4496 15 6 2.2268 -0.9866 -3.5895 16 6 1.7619 -0.3302 -4.8639 17 8 1.0628 0.6594 -4.8160 18 6 2.1574 -0.8896 -6.1665 19 6 2.9651 -2.0302 -6.2251 20 6 3.3340 -2.5511 -7.4475 21 6 2.9039 -1.9531 -8.6181 22 6 2.1055 -0.8164 -8.5720 23 7 1.6777 -0.2134 -9.7604 24 6 2.1149 -0.6223 -11.1005 25 6 1.0884 -0.0038 -12.0754 26 6 0.5699 1.2048 -11.2622 27 6 0.8138 0.8146 -9.8211 28 8 0.3076 1.3542 -8.8601 29 6 1.7279 -0.2833 -7.3500 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 0.7081 1.1612 3.4843 34 1 1.8627 -2.0134 -3.5563 35 1 3.3163 -0.9863 -3.5567 36 1 3.2997 -2.5026 -5.3133 37 1 3.9573 -3.4320 -7.4910 38 1 3.1931 -2.3688 -9.5720 39 1 2.1075 -1.7090 -11.1844 40 1 3.1123 -0.2340 -11.3066 41 1 0.2819 -0.7050 -12.2892 42 1 1.5720 0.3237 -12.9956 43 1 -0.4945 1.3567 -11.4413 44 1 1.1323 2.1039 -11.5145 45 1 1.1044 0.5978 -7.3123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771773849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:53 Heat of formation + Delta-G solvation = -143.010602 kcal Electronic energy + Delta-G solvation = -28878.651369 eV Core-core repulsion = 24632.788817 eV Total energy + Delta-G solvation = -4245.862552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.21278 -41.63658 -40.67187 -39.19772 -37.73194 -37.41815 -35.95296 -34.36184 -32.82123 -32.50250 -30.82640 -29.44342 -28.65020 -27.31179 -25.55091 -24.67152 -24.06632 -22.84916 -21.68220 -21.43979 -20.34348 -18.84882 -18.70317 -18.06944 -17.90544 -17.74803 -17.51986 -17.39324 -16.85320 -16.47880 -16.33055 -15.98251 -15.75317 -15.22111 -14.99813 -14.82681 -14.77194 -14.53161 -14.47742 -14.25959 -13.87500 -13.62357 -13.50603 -13.40853 -12.98964 -12.93211 -12.80358 -12.67831 -12.63268 -12.33301 -12.31907 -12.05397 -12.04945 -11.84109 -11.28616 -11.23922 -11.14996 -10.91210 -10.79709 -10.54987 -10.14063 -9.08653 -8.20349 -6.35124 -0.55078 0.16242 1.09406 1.33761 1.41744 1.45852 1.49484 1.51018 1.57709 1.75771 2.42051 2.70374 2.80807 3.09439 3.25119 3.52137 3.67659 3.91016 3.93844 3.98616 4.00016 4.04406 4.09880 4.14663 4.18445 4.28325 4.47524 4.59746 4.62650 4.63518 4.79215 4.85402 4.87931 4.93088 5.03727 5.07395 5.17382 5.20896 5.27984 5.29772 5.37751 5.40428 5.64926 5.83535 5.86859 5.97475 6.05067 6.25570 6.71290 6.89829 6.93760 7.33708 8.86350 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027771 B = 0.001899 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.997298 B =14740.484900 C =15636.004703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.049 3.951 3 H 0.047 0.953 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.271 1.271 12 C 0.476 3.524 13 O -0.530 6.530 14 O -0.359 6.359 15 C 0.012 3.988 16 C 0.398 3.602 17 O -0.472 6.472 18 C -0.153 4.153 19 C -0.095 4.095 20 C -0.090 4.090 21 C -0.107 4.107 22 C 0.140 3.860 23 N -0.564 5.564 24 C 0.085 3.915 25 C -0.117 4.117 26 C -0.147 4.147 27 C 0.489 3.511 28 O -0.566 6.566 29 C -0.132 4.132 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.268 0.732 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.155 0.845 37 H 0.179 0.821 38 H 0.175 0.825 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.111 0.889 44 H 0.124 0.876 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 -7.971 -36.778 38.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 H 0.065 0.935 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.550 5.550 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.196 1.196 12 C 0.321 3.679 13 O -0.419 6.419 14 O -0.276 6.276 15 C -0.062 4.062 16 C 0.276 3.724 17 O -0.348 6.348 18 C -0.154 4.154 19 C -0.114 4.114 20 C -0.108 4.108 21 C -0.127 4.127 22 C 0.046 3.954 23 N -0.287 5.287 24 C -0.035 4.035 25 C -0.154 4.154 26 C -0.187 4.187 27 C 0.281 3.719 28 O -0.445 6.445 29 C -0.153 4.153 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.172 0.828 37 H 0.197 0.803 38 H 0.192 0.808 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.147 0.853 43 H 0.130 0.870 44 H 0.142 0.858 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.089 -7.330 -36.164 37.248 hybrid contribution -0.025 0.135 1.372 1.379 sum 5.064 -7.195 -34.792 35.887 Atomic orbital electron populations 1.21569 0.94696 1.00021 1.01655 1.18706 0.95755 0.96222 0.86359 0.93518 1.21215 1.32804 1.13422 0.90059 0.91849 1.25752 0.94864 0.95676 1.01899 1.69981 1.36607 1.23550 1.24880 0.85420 0.78752 0.78597 0.77737 1.19652 1.20103 1.19603 1.24864 0.76135 0.82714 0.84198 1.90460 1.37048 1.27188 1.87156 1.86676 1.70136 1.55676 1.15143 1.23501 1.02231 0.97646 0.82816 1.22701 0.76905 0.82820 0.89996 1.90575 1.30257 1.24103 1.89871 1.19989 1.03898 0.99815 0.91734 1.21791 0.95206 0.93309 1.01127 1.21443 0.98769 1.00531 0.90043 1.21505 0.96790 0.92763 1.01653 1.17833 0.98212 0.94931 0.84437 1.46147 1.42888 1.32679 1.07010 1.22740 1.00235 1.03112 0.77382 1.22694 0.98958 0.95460 0.98326 1.22430 1.05777 1.02171 0.88278 1.22310 0.77176 0.78722 0.93699 1.90701 1.52822 1.56999 1.43955 1.21690 1.00851 1.01323 0.91436 0.94789 0.90190 0.94310 0.92246 0.85898 0.85816 0.82771 0.80337 0.80759 0.87002 0.88034 0.88727 0.85268 0.87025 0.85768 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.26 8.90 71.98 0.64 -5.62 16 2 C 0.05 2.66 2.74 -12.29 -0.03 2.62 16 3 H 0.05 2.69 8.14 -2.38 -0.02 2.68 16 4 C -0.54 -31.26 8.37 25.60 0.21 -31.05 16 5 H 0.06 3.78 6.76 -2.91 -0.02 3.76 16 6 C 0.02 1.01 5.30 84.65 0.45 1.45 16 7 N -0.91 -52.60 11.32 21.45 0.24 -52.36 16 8 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 C 0.48 23.60 7.25 71.23 0.52 24.12 16 13 O -0.53 -26.92 15.21 21.95 0.33 -26.59 16 14 O -0.36 -16.06 9.66 -45.12 -0.44 -16.50 16 15 C 0.01 0.40 4.55 71.24 0.32 0.72 16 16 C 0.40 13.80 7.20 28.04 0.20 14.00 16 17 O -0.47 -20.98 16.49 15.86 0.26 -20.72 16 18 C -0.15 -4.17 5.87 -20.17 -0.12 -4.29 16 19 C -0.10 -1.69 9.47 22.59 0.21 -1.48 16 20 C -0.09 -0.98 10.02 22.21 0.22 -0.76 16 21 C -0.11 -1.19 9.42 22.47 0.21 -0.98 16 22 C 0.14 2.79 6.59 38.10 0.25 3.04 16 23 N -0.56 -8.87 3.14 -627.83 -1.97 -10.84 16 24 C 0.09 0.25 6.51 86.83 0.57 0.82 16 25 C -0.12 -0.02 7.18 31.65 0.23 0.21 16 26 C -0.15 -1.20 6.86 30.58 0.21 -0.99 16 27 C 0.49 10.27 7.92 87.90 0.70 10.96 16 28 O -0.57 -19.03 14.81 -3.04 -0.05 -19.07 16 29 C -0.13 -3.89 8.84 22.71 0.20 -3.69 16 30 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 4.38 6.07 -2.39 -0.01 4.37 16 32 H 0.04 1.84 8.11 -2.39 -0.02 1.82 16 33 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.12 3.53 8.08 -2.39 -0.02 3.51 16 35 H 0.12 3.53 8.08 -2.39 -0.02 3.51 16 36 H 0.15 2.13 7.04 -2.91 -0.02 2.11 16 37 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 38 H 0.18 0.39 6.72 -2.91 -0.02 0.37 16 39 H 0.11 -0.17 7.22 -2.39 -0.02 -0.19 16 40 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.13 4.83 4.83 -2.91 -0.01 4.81 16 Total: -1.00 -87.90 380.73 6.43 -81.47 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.03 Total: 8.90 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 4.99 Total: 9.10 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -1.73 Total: -63.20 kcal Atomic # 8 Polarization: -82.99 SS G_CDS: 0.11 Total: -82.88 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -87.90 6.43 -81.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771773849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.540 kcal (2) G-P(sol) polarization free energy of solvation -87.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds