Wall clock time and date at job start Wed Apr 1 2020 02:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47378 * 2 1 4 4 O 1.21283 * 119.99905 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00147 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00473 * 180.27790 * 5 3 2 7 7 H 1.09004 * 109.46939 * 324.72931 * 6 5 3 8 8 C 1.52996 * 109.47252 * 84.72335 * 6 5 3 9 9 C 1.53003 * 109.47413 * 295.82739 * 8 6 5 10 10 S 1.81394 * 109.47264 * 179.97438 * 9 8 6 11 11 C 1.81404 * 103.00127 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47314 * 204.72907 * 6 5 3 13 13 O 1.20825 * 120.00131 * 334.00316 * 12 6 5 14 14 O 1.34223 * 120.00024 * 154.00996 * 12 6 5 15 15 C 1.45203 * 117.00305 * 184.76297 * 14 12 6 16 16 C 1.52993 * 109.47612 * 175.47302 * 15 14 12 17 17 C 1.50711 * 112.99843 * 53.42857 * 16 15 14 18 18 H 1.07991 * 119.99983 * 244.95361 * 17 16 15 19 19 C 1.37877 * 119.99774 * 64.95980 * 17 16 15 20 20 N 1.31521 * 119.99715 * 5.97597 * 19 17 16 21 21 Si 1.86798 * 120.00052 * 185.97764 * 19 17 16 22 22 H 1.48496 * 109.47174 * 59.99947 * 21 19 17 23 23 H 1.48499 * 109.46961 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46943 * 299.99827 * 21 19 17 25 25 C 1.54036 * 113.82039 * 281.44841 * 16 15 14 26 26 O 1.44176 * 85.51825 * 223.19641 * 25 16 15 27 27 C 1.44175 * 93.33978 * 24.18599 * 26 25 16 28 28 H 1.08998 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46912 * 300.00129 * 1 2 3 30 30 H 1.08999 * 109.46639 * 59.99610 * 1 2 3 31 31 H 1.08996 * 109.46912 * 239.99871 * 2 1 3 32 32 H 1.08999 * 109.46639 * 120.00389 * 2 1 3 33 33 H 0.97004 * 119.99347 * 0.02562 * 5 3 2 34 34 H 1.09007 * 109.46946 * 55.82040 * 8 6 5 35 35 H 1.08996 * 109.47470 * 175.82588 * 8 6 5 36 36 H 1.09006 * 109.46926 * 299.99888 * 9 8 6 37 37 H 1.09005 * 109.47171 * 59.99550 * 9 8 6 38 38 H 1.08996 * 109.47418 * 300.00550 * 11 10 9 39 39 H 1.09000 * 109.46740 * 59.99958 * 11 10 9 40 40 H 1.09000 * 109.47189 * 179.97438 * 11 10 9 41 41 H 1.09005 * 109.46781 * 295.47206 * 15 14 12 42 42 H 1.08999 * 109.47239 * 55.47040 * 15 14 12 43 43 H 0.97003 * 119.99662 * 185.01316 * 20 19 17 44 44 H 1.09002 * 113.85618 * 337.33817 * 25 16 15 45 45 H 1.08996 * 113.86817 * 109.03984 * 25 16 15 46 46 H 1.08997 * 113.86463 * 221.65877 * 27 26 25 47 47 H 1.09001 * 113.98298 * 89.97639 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8460 3.0481 0.0067 7 1 3.1758 3.6731 -0.5836 8 6 3.8916 3.5665 1.4454 9 6 2.4723 3.6179 2.0144 10 16 2.5265 4.2318 3.7204 11 6 0.7808 4.2221 4.2133 12 6 5.2298 3.0942 -0.5881 13 8 5.9385 2.1165 -0.5458 14 8 5.6753 4.2214 -1.1648 15 6 6.9746 4.1628 -1.8102 16 6 7.2611 5.4968 -2.5023 17 6 7.1211 6.6806 -1.5801 18 1 6.3489 7.4146 -1.7571 19 6 7.9790 6.8266 -0.5107 20 7 8.9911 6.0000 -0.3620 21 14 7.7037 8.1983 0.7271 22 1 6.3690 8.0358 1.3574 23 1 8.7562 8.1397 1.7730 24 1 7.7675 9.5103 0.0343 25 6 6.5360 5.6664 -3.8507 26 8 7.7886 6.1965 -4.3289 27 6 8.5609 5.5024 -3.3286 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9878 0.9296 0.0005 34 1 4.5026 2.8988 2.0530 35 1 4.3243 4.5669 1.4576 36 1 1.8612 4.2855 1.4068 37 1 2.0395 2.6175 2.0021 38 1 0.2125 4.8751 3.5510 39 1 0.3898 3.2069 4.1457 40 1 0.6910 4.5780 5.2397 41 1 7.7435 3.9692 -1.0621 42 1 6.9773 3.3620 -2.5496 43 1 9.5514 6.0565 0.4277 44 1 6.2487 4.7246 -4.3182 45 1 5.7276 6.3972 -3.8280 46 1 9.3586 6.1033 -2.8919 47 1 8.8931 4.5105 -3.6349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772367649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:14 Heat of formation + Delta-G solvation = -143.863557 kcal Electronic energy + Delta-G solvation = -29226.374749 eV Core-core repulsion = 25115.919161 eV Total energy + Delta-G solvation = -4110.455588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.70034 -39.68634 -39.07120 -36.27617 -35.40701 -33.34412 -32.95015 -32.20836 -30.11263 -29.13054 -28.07635 -25.49382 -25.31985 -24.61819 -24.08242 -22.30663 -20.60009 -20.34789 -19.07481 -17.93041 -17.14434 -16.58499 -16.35144 -16.24165 -16.07422 -15.61890 -15.41303 -14.95441 -14.72580 -14.47751 -14.41290 -14.23584 -14.13565 -13.79977 -13.63180 -13.18982 -13.07508 -12.70527 -12.60630 -12.43604 -12.20243 -12.03203 -11.91372 -11.75788 -11.58347 -11.46236 -11.20459 -10.98859 -10.82123 -10.52598 -10.33451 -10.19907 -10.02872 -9.96000 -9.68950 -9.49855 -9.27055 -9.12901 -8.80012 -8.32843 -7.73860 -6.20835 -4.24128 1.58191 2.32337 2.45188 2.54379 2.72170 3.28988 3.33673 3.37041 3.38834 4.33270 4.44513 4.73370 4.78512 4.80772 4.84301 4.88318 4.92981 4.99682 5.02241 5.12948 5.15796 5.19689 5.32156 5.51315 5.54337 5.61762 5.64257 5.76117 5.80400 5.92936 5.94347 6.04047 6.11350 6.16691 6.23014 6.31134 6.46691 6.87945 7.00656 7.19421 7.22845 7.25777 7.30560 7.75808 7.96296 8.08536 8.23057 8.73366 9.40586 10.87507 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.003633 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.632064 B = 7705.546467 C = 9672.467182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.514 3.486 4 O -0.535 6.535 5 N -0.717 5.717 6 C 0.160 3.840 7 H 0.124 0.876 8 C -0.111 4.111 9 C -0.067 4.067 10 S -0.273 6.273 11 C -0.117 4.117 12 C 0.454 3.546 13 O -0.518 6.518 14 O -0.319 6.319 15 C 0.083 3.917 16 C 0.034 3.966 17 C -0.486 4.486 18 H 0.066 0.934 19 C 0.069 3.931 20 N -0.890 5.890 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.027 3.973 26 O -0.387 6.387 27 C 0.050 3.950 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.411 0.589 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.039 0.961 43 H 0.266 0.734 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.522 -11.827 4.316 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.302 3.698 4 O -0.412 6.412 5 N -0.372 5.372 6 C 0.051 3.949 7 H 0.142 0.858 8 C -0.151 4.151 9 C -0.215 4.215 10 S -0.047 6.047 11 C -0.286 4.286 12 C 0.296 3.704 13 O -0.408 6.408 14 O -0.233 6.233 15 C 0.010 3.990 16 C 0.033 3.967 17 C -0.524 4.524 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.527 5.527 21 Si 0.722 3.278 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.050 4.050 26 O -0.306 6.306 27 C -0.027 4.027 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.248 0.752 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.118 0.882 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.701 -10.901 4.800 18.155 hybrid contribution -0.598 -0.366 0.182 0.724 sum -14.300 -11.267 4.982 18.875 Atomic orbital electron populations 1.21525 0.92828 1.01626 1.03382 1.21638 0.98677 0.93378 1.04706 1.20795 0.81551 0.92171 0.75329 1.90718 1.55190 1.46285 1.49002 1.45949 1.07790 1.07881 1.75594 1.20321 0.91877 0.85190 0.97470 0.85840 1.21668 0.96029 1.04229 0.93146 1.23473 1.00192 1.04339 0.93526 1.86967 1.11958 1.87962 1.17858 1.23316 0.95333 1.04908 1.05044 1.23235 0.88661 0.82206 0.76289 1.90608 1.57370 1.36748 1.56059 1.86561 1.38648 1.34287 1.63762 1.23549 0.80149 0.99306 0.96039 1.21124 0.91248 0.93089 0.91256 1.20526 1.15399 1.06517 1.09932 0.91572 1.24923 0.93955 0.96555 0.97914 1.69874 1.16226 1.38465 1.28129 0.86592 0.78206 0.82269 0.80767 1.19757 1.21207 1.20029 1.24105 0.89188 0.96951 0.94718 1.89502 1.18622 1.66915 1.55566 1.23931 0.97492 0.94983 0.86285 0.92051 0.92049 0.91850 0.88639 0.88724 0.75202 0.89970 0.88209 0.88960 0.89829 0.90458 0.90777 0.88326 0.89362 0.94316 0.92455 0.92936 0.90280 0.88188 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.14 -1.03 6.42 -27.88 -0.18 -1.21 16 3 C 0.51 5.54 6.35 -10.99 -0.07 5.47 16 4 O -0.54 -7.24 13.10 5.56 0.07 -7.16 16 5 N -0.72 -8.16 5.00 -54.94 -0.27 -8.43 16 6 C 0.16 2.24 2.77 -69.09 -0.19 2.05 16 7 H 0.12 1.76 7.58 -51.93 -0.39 1.37 16 8 C -0.11 -1.55 4.88 -26.73 -0.13 -1.68 16 9 C -0.07 -0.86 4.52 37.16 0.17 -0.70 16 10 S -0.27 -3.57 22.38 -107.50 -2.41 -5.98 16 11 C -0.12 -1.12 10.76 101.05 1.09 -0.03 16 12 C 0.45 8.04 7.16 36.00 0.26 8.29 16 13 O -0.52 -9.83 15.76 -18.75 -0.30 -10.13 16 14 O -0.32 -6.59 9.82 -39.24 -0.39 -6.98 16 15 C 0.08 1.83 4.68 37.15 0.17 2.00 16 16 C 0.03 0.78 0.62 -154.58 -0.10 0.68 16 17 C -0.49 -12.55 7.92 -34.43 -0.27 -12.82 16 18 H 0.07 1.72 7.82 -52.49 -0.41 1.31 16 19 C 0.07 1.79 5.25 -17.82 -0.09 1.70 16 20 N -0.89 -23.53 11.31 55.43 0.63 -22.91 16 21 Si 0.89 20.65 29.55 -169.99 -5.02 15.62 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.03 0.58 8.35 37.61 0.31 0.89 16 26 O -0.39 -9.03 12.40 -35.23 -0.44 -9.47 16 27 C 0.05 1.15 7.92 37.60 0.30 1.45 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.07 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.41 4.26 7.80 -40.82 -0.32 3.94 16 34 H 0.08 1.15 8.14 -51.92 -0.42 0.72 16 35 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.09 1.24 7.79 -51.92 -0.40 0.84 16 37 H 0.08 1.04 5.65 -51.92 -0.29 0.74 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 41 H 0.09 2.17 7.16 -51.93 -0.37 1.79 16 42 H 0.04 0.79 8.00 -51.93 -0.42 0.37 16 43 H 0.27 6.84 8.32 -40.82 -0.34 6.50 16 44 H 0.05 0.98 8.03 -51.93 -0.42 0.56 16 45 H 0.08 1.61 8.09 -51.93 -0.42 1.19 16 46 H 0.10 2.48 7.42 -51.93 -0.39 2.10 16 47 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -29.54 400.54 -8.09 -37.63 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -7.61 Total: 6.31 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 1.61 Total: 5.46 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.35 Total: -31.34 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.04 Total: -33.74 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -2.41 Total: -5.98 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.54 -8.09 -37.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772367649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.237 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds