Wall clock time and date at job start Wed Apr 1 2020 02:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47378 * 2 1 4 4 O 1.21283 * 119.99905 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00147 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00473 * 180.27790 * 5 3 2 7 7 H 1.09004 * 109.46939 * 324.72931 * 6 5 3 8 8 C 1.52996 * 109.47252 * 84.72335 * 6 5 3 9 9 C 1.53003 * 109.47413 * 295.82739 * 8 6 5 10 10 S 1.81394 * 109.47264 * 179.97438 * 9 8 6 11 11 C 1.81404 * 103.00127 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47314 * 204.72907 * 6 5 3 13 13 O 1.20825 * 120.00131 * 334.00316 * 12 6 5 14 14 O 1.34223 * 120.00024 * 154.00996 * 12 6 5 15 15 C 1.45203 * 117.00305 * 184.76297 * 14 12 6 16 16 C 1.52993 * 109.47612 * 175.47302 * 15 14 12 17 17 C 1.50711 * 112.99843 * 53.42857 * 16 15 14 18 18 H 1.07991 * 119.99983 * 244.95361 * 17 16 15 19 19 C 1.37877 * 119.99774 * 64.95980 * 17 16 15 20 20 N 1.31521 * 119.99715 * 5.97597 * 19 17 16 21 21 Si 1.86798 * 120.00052 * 185.97764 * 19 17 16 22 22 H 1.48496 * 109.47174 * 59.99947 * 21 19 17 23 23 H 1.48499 * 109.46961 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46943 * 299.99827 * 21 19 17 25 25 C 1.54036 * 113.82039 * 281.44841 * 16 15 14 26 26 O 1.44176 * 85.51825 * 223.19641 * 25 16 15 27 27 C 1.44175 * 93.33978 * 24.18599 * 26 25 16 28 28 H 1.08998 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46912 * 300.00129 * 1 2 3 30 30 H 1.08999 * 109.46639 * 59.99610 * 1 2 3 31 31 H 1.08996 * 109.46912 * 239.99871 * 2 1 3 32 32 H 1.08999 * 109.46639 * 120.00389 * 2 1 3 33 33 H 0.97004 * 119.99347 * 0.02562 * 5 3 2 34 34 H 1.09007 * 109.46946 * 55.82040 * 8 6 5 35 35 H 1.08996 * 109.47470 * 175.82588 * 8 6 5 36 36 H 1.09006 * 109.46926 * 299.99888 * 9 8 6 37 37 H 1.09005 * 109.47171 * 59.99550 * 9 8 6 38 38 H 1.08996 * 109.47418 * 300.00550 * 11 10 9 39 39 H 1.09000 * 109.46740 * 59.99958 * 11 10 9 40 40 H 1.09000 * 109.47189 * 179.97438 * 11 10 9 41 41 H 1.09005 * 109.46781 * 295.47206 * 15 14 12 42 42 H 1.08999 * 109.47239 * 55.47040 * 15 14 12 43 43 H 0.97003 * 119.99662 * 185.01316 * 20 19 17 44 44 H 1.09002 * 113.85618 * 337.33817 * 25 16 15 45 45 H 1.08996 * 113.86817 * 109.03984 * 25 16 15 46 46 H 1.08997 * 113.86463 * 221.65877 * 27 26 25 47 47 H 1.09001 * 113.98298 * 89.97639 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8460 3.0481 0.0067 7 1 3.1758 3.6731 -0.5836 8 6 3.8916 3.5665 1.4454 9 6 2.4723 3.6179 2.0144 10 16 2.5265 4.2318 3.7204 11 6 0.7808 4.2221 4.2133 12 6 5.2298 3.0942 -0.5881 13 8 5.9385 2.1165 -0.5458 14 8 5.6753 4.2214 -1.1648 15 6 6.9746 4.1628 -1.8102 16 6 7.2611 5.4968 -2.5023 17 6 7.1211 6.6806 -1.5801 18 1 6.3489 7.4146 -1.7571 19 6 7.9790 6.8266 -0.5107 20 7 8.9911 6.0000 -0.3620 21 14 7.7037 8.1983 0.7271 22 1 6.3690 8.0358 1.3574 23 1 8.7562 8.1397 1.7730 24 1 7.7675 9.5103 0.0343 25 6 6.5360 5.6664 -3.8507 26 8 7.7886 6.1965 -4.3289 27 6 8.5609 5.5024 -3.3286 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9878 0.9296 0.0005 34 1 4.5026 2.8988 2.0530 35 1 4.3243 4.5669 1.4576 36 1 1.8612 4.2855 1.4068 37 1 2.0395 2.6175 2.0021 38 1 0.2125 4.8751 3.5510 39 1 0.3898 3.2069 4.1457 40 1 0.6910 4.5780 5.2397 41 1 7.7435 3.9692 -1.0621 42 1 6.9773 3.3620 -2.5496 43 1 9.5514 6.0565 0.4277 44 1 6.2487 4.7246 -4.3182 45 1 5.7276 6.3972 -3.8280 46 1 9.3586 6.1033 -2.8919 47 1 8.8931 4.5105 -3.6349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772367649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:13 Heat of formation + Delta-G solvation = -161.612077 kcal Electronic energy + Delta-G solvation = -29227.144382 eV Core-core repulsion = 25115.919161 eV Total energy + Delta-G solvation = -4111.225221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.97866 -41.14321 -40.53466 -37.70037 -36.65097 -34.89513 -34.15046 -33.05412 -31.91362 -29.95280 -29.22634 -27.29496 -27.09978 -26.04801 -25.14165 -23.53885 -21.71481 -21.43748 -20.89860 -19.05485 -18.63000 -17.91447 -17.66904 -17.57304 -17.29791 -16.93255 -16.85612 -16.50885 -16.17597 -16.14161 -15.80255 -15.60255 -15.16955 -14.76773 -14.59465 -14.39310 -14.08674 -13.97790 -13.86015 -13.73100 -13.52335 -13.31816 -13.07512 -12.87767 -12.75579 -12.66180 -12.60533 -12.36434 -12.34837 -11.99351 -11.92491 -11.77443 -11.36055 -11.33383 -11.11947 -10.92533 -10.88644 -10.70155 -10.31351 -10.18405 -8.77476 -8.19212 -6.26485 0.59415 1.02628 1.42111 1.42738 1.44885 1.50662 1.58919 1.61810 2.24897 2.41369 3.00035 3.22337 3.39299 3.71461 3.72816 3.76288 3.88820 4.07624 4.13261 4.23080 4.25059 4.28619 4.29440 4.32189 4.45195 4.47185 4.50517 4.56228 4.63766 4.74074 4.76871 4.83168 4.91292 5.02669 5.09141 5.10739 5.15145 5.21875 5.39823 5.47181 5.48859 5.58774 5.72987 6.21751 6.38981 6.65495 6.72961 7.11436 7.39625 8.87491 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.003633 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.632064 B = 7705.546467 C = 9672.467182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.512 3.488 4 O -0.564 6.564 5 N -0.712 5.712 6 C 0.173 3.827 7 H 0.122 0.878 8 C -0.106 4.106 9 C -0.048 4.048 10 S -0.323 6.323 11 C -0.103 4.103 12 C 0.455 3.545 13 O -0.530 6.530 14 O -0.334 6.334 15 C 0.095 3.905 16 C 0.018 3.982 17 C -0.500 4.500 18 H 0.056 0.944 19 C 0.032 3.968 20 N -0.907 5.907 21 Si 0.941 3.059 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.036 3.964 26 O -0.403 6.403 27 C 0.054 3.946 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.418 0.582 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.264 0.736 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.264 -13.378 4.534 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C 0.301 3.699 4 O -0.442 6.442 5 N -0.368 5.368 6 C 0.064 3.936 7 H 0.140 0.860 8 C -0.146 4.146 9 C -0.196 4.196 10 S -0.098 6.098 11 C -0.272 4.272 12 C 0.297 3.703 13 O -0.420 6.420 14 O -0.248 6.248 15 C 0.021 3.979 16 C 0.017 3.983 17 C -0.538 4.538 18 H 0.075 0.925 19 C -0.168 4.168 20 N -0.545 5.545 21 Si 0.767 3.233 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.040 4.040 26 O -0.323 6.323 27 C -0.023 4.023 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.256 0.744 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.453 -12.472 5.015 20.482 hybrid contribution -0.118 0.090 0.123 0.193 sum -15.571 -12.382 5.138 20.547 Atomic orbital electron populations 1.21532 0.92879 1.02728 1.02137 1.21721 0.98438 0.90753 1.06774 1.21545 0.80711 0.93532 0.74063 1.90712 1.55703 1.47587 1.50228 1.45955 1.08390 1.06666 1.75781 1.20132 0.89434 0.87061 0.97007 0.85982 1.21593 0.96821 1.03003 0.93148 1.23270 0.98964 1.04391 0.92971 1.87129 1.16106 1.88228 1.18292 1.23380 0.91909 1.06002 1.05877 1.23861 0.89698 0.81171 0.75527 1.90594 1.58093 1.36931 1.56404 1.86554 1.37913 1.35972 1.64402 1.23207 0.80185 0.99025 0.95484 1.21168 0.92185 0.92857 0.92062 1.20750 1.15005 1.07272 1.10724 0.92528 1.25468 0.93942 0.98176 0.99251 1.69957 1.16690 1.39541 1.28314 0.85862 0.77981 0.80329 0.79131 1.19664 1.21065 1.19857 1.24207 0.88427 0.98316 0.93071 1.89474 1.19629 1.67568 1.55580 1.23849 0.96749 0.95492 0.86227 0.89742 0.93111 0.93320 0.86624 0.86384 0.74377 0.90062 0.90245 0.89739 0.89126 0.89959 0.89482 0.86705 0.92368 0.92534 0.92715 0.89870 0.89864 0.90738 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.20 71.98 0.66 -0.98 16 2 C -0.14 -1.56 6.42 29.85 0.19 -1.36 16 3 C 0.51 10.09 6.35 87.65 0.56 10.64 16 4 O -0.56 -14.57 13.10 -3.04 -0.04 -14.61 16 5 N -0.71 -15.13 5.00 -446.11 -2.23 -17.36 16 6 C 0.17 4.76 2.77 44.24 0.12 4.88 16 7 H 0.12 3.44 7.58 -2.39 -0.02 3.42 16 8 C -0.11 -2.95 4.88 30.59 0.15 -2.80 16 9 C -0.05 -1.21 4.52 71.98 0.33 -0.88 16 10 S -0.32 -8.25 22.38 -56.49 -1.26 -9.51 16 11 C -0.10 -1.77 10.76 113.37 1.22 -0.55 16 12 C 0.45 15.94 7.16 71.23 0.51 16.45 16 13 O -0.53 -19.81 15.76 21.97 0.35 -19.46 16 14 O -0.33 -13.82 9.82 -51.35 -0.50 -14.32 16 15 C 0.09 4.17 4.68 71.98 0.34 4.50 16 16 C 0.02 0.83 0.62 -52.23 -0.03 0.80 16 17 C -0.50 -26.07 7.92 25.60 0.20 -25.87 16 18 H 0.06 2.98 7.82 -2.92 -0.02 2.96 16 19 C 0.03 1.69 5.25 84.65 0.44 2.13 16 20 N -0.91 -48.82 11.31 21.45 0.24 -48.58 16 21 Si 0.94 42.78 29.55 68.60 2.03 44.81 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 C 0.04 1.48 8.35 72.27 0.60 2.08 16 26 O -0.40 -18.49 12.40 -148.98 -1.85 -20.34 16 27 C 0.05 2.46 7.92 72.27 0.57 3.04 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 30 H 0.05 0.73 8.10 -2.39 -0.02 0.72 16 31 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.42 7.87 7.80 -92.71 -0.72 7.15 16 34 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.08 2.25 7.79 -2.39 -0.02 2.24 16 37 H 0.09 2.14 5.65 -2.39 -0.01 2.13 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 2.90 7.16 -2.38 -0.02 2.88 16 42 H 0.06 2.24 8.00 -2.39 -0.02 2.22 16 43 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 44 H 0.08 2.88 8.03 -2.39 -0.02 2.86 16 45 H 0.08 3.29 8.09 -2.39 -0.02 3.27 16 46 H 0.07 3.77 7.42 -2.39 -0.02 3.75 16 47 H 0.07 2.87 8.10 -2.39 -0.02 2.85 16 Total: -1.00 -63.84 400.54 2.84 -61.00 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.25 Total: 26.29 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 5.86 Total: 12.07 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -1.99 Total: -65.94 kcal Atomic # 8 Polarization: -66.68 SS G_CDS: -2.05 Total: -68.73 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.26 Total: -9.51 kcal Total: -63.84 2.84 -61.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772367649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.609 kcal (2) G-P(sol) polarization free energy of solvation -63.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds