Wall clock time and date at job start Wed Apr 1 2020 04:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48504 * 109.46793 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47282 * 300.00142 * 3 2 1 6 6 H 1.48500 * 109.47237 * 60.00639 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 N 1.46900 * 109.47276 * 179.97438 * 15 14 13 17 17 C 1.46907 * 111.00034 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.46847 * 180.02562 * 17 16 15 19 19 O 1.21280 * 120.00260 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99371 * 179.97438 * 18 17 16 21 21 C 1.46509 * 119.99742 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.47054 * 180.02562 * 21 20 18 23 23 H 1.09005 * 110.43784 * 303.90295 * 22 21 20 24 24 C 1.54815 * 110.48518 * 181.22148 * 22 21 20 25 25 C 1.54998 * 102.09268 * 220.43891 * 24 22 21 26 26 O 1.44384 * 103.48587 * 37.02476 * 25 24 22 27 27 C 1.43743 * 106.97867 * 319.93836 * 26 25 24 28 28 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 30 30 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 31 31 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 32 32 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 33 33 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 34 34 H 1.09009 * 109.47378 * 299.99899 * 15 14 13 35 35 H 1.08993 * 109.47209 * 59.99808 * 15 14 13 36 36 H 1.00903 * 111.00238 * 56.04795 * 16 15 14 37 37 H 1.09005 * 109.46894 * 299.99642 * 17 16 15 38 38 H 1.09000 * 109.46976 * 59.99864 * 17 16 15 39 39 H 0.97000 * 120.00779 * 0.02562 * 20 18 17 40 40 H 1.08997 * 109.47108 * 300.00200 * 21 20 18 41 41 H 1.09000 * 109.46733 * 60.00064 * 21 20 18 42 42 H 1.08998 * 110.90935 * 338.63823 * 24 22 21 43 43 H 1.09001 * 110.90882 * 102.24576 * 24 22 21 44 44 H 1.08994 * 110.62152 * 278.52442 * 25 24 22 45 45 H 1.08996 * 110.75539 * 155.58665 * 25 24 22 46 46 H 1.09000 * 109.87661 * 267.09157 * 27 26 25 47 47 H 1.08992 * 110.00594 * 146.00828 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 6 3.5025 -8.6985 0.0131 16 7 2.9874 -10.0742 0.0202 17 6 4.0872 -11.0481 0.0245 18 6 3.5212 -12.4448 0.0311 19 8 2.3200 -12.6124 0.0326 20 7 4.3499 -13.5076 0.0353 21 6 3.7998 -14.8655 0.0423 22 6 4.9452 -15.8798 0.0467 23 1 5.6074 -15.7098 -0.8023 24 6 4.3895 -17.3246 0.0232 25 6 5.3362 -18.0526 1.0112 26 8 5.5794 -17.0640 2.0349 27 6 5.7320 -15.7992 1.3692 28 1 -0.4851 0.8400 0.0004 29 1 3.1252 -3.7317 0.8875 30 1 3.1238 -3.7309 -0.8925 31 1 3.8010 -6.1834 0.0019 32 1 1.7221 -7.8710 0.9002 33 1 1.7216 -7.8793 -0.8797 34 1 4.1106 -8.5424 -0.8781 35 1 4.1117 -8.5344 0.9018 36 1 2.3671 -10.2321 -0.7599 37 1 4.6993 -10.9088 -0.8666 38 1 4.7003 -10.8999 0.9134 39 1 5.3106 -13.3737 0.0345 40 1 3.1880 -15.0050 0.9335 41 1 3.1863 -15.0134 -0.8464 42 1 3.3599 -17.3512 0.3798 43 1 4.4650 -17.7542 -0.9758 44 1 6.2670 -18.3303 0.5169 45 1 4.8506 -18.9319 1.4344 46 1 6.7861 -15.6139 1.1626 47 1 5.3303 -14.9995 1.9913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:59 Heat of formation + Delta-G solvation = -121.177790 kcal Electronic energy + Delta-G solvation = -25783.518449 eV Core-core repulsion = 21706.339341 eV Total energy + Delta-G solvation = -4077.179108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.57437 -39.71023 -39.15156 -36.75476 -35.67445 -34.16835 -32.88390 -32.41957 -30.65250 -30.00227 -28.63607 -26.72542 -25.49793 -24.93875 -23.16660 -22.37350 -21.38124 -20.83754 -20.34182 -18.03584 -17.67635 -17.40013 -16.86997 -16.60141 -16.35279 -16.19025 -15.88905 -15.61305 -15.54913 -14.98689 -14.79888 -14.52647 -14.38128 -14.11766 -13.72132 -13.56560 -13.38971 -13.20895 -13.08044 -12.74079 -12.53080 -12.41791 -12.20170 -11.95766 -11.82869 -11.77230 -11.47117 -11.46234 -11.06472 -11.01037 -10.75348 -10.33827 -10.26140 -9.79889 -9.63760 -9.40954 -9.07018 -8.91664 -8.87776 -8.21595 -6.48800 -6.20835 -3.91281 2.19880 2.45798 3.00875 3.12007 3.22093 3.27084 3.27645 3.32039 3.59012 3.75376 3.93727 4.08621 4.15082 4.21069 4.26439 4.48157 4.53247 4.58723 4.61130 4.70797 4.84929 4.87771 4.95325 4.96690 5.05774 5.13869 5.14398 5.16678 5.21102 5.23027 5.25177 5.42545 5.62261 5.76363 5.82197 5.89507 5.91946 6.14359 6.20604 6.36486 6.60991 6.84872 6.97699 7.60548 7.70293 7.75728 8.36173 8.62917 9.24528 10.86693 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.049366 B = 0.001139 C = 0.001124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.061447 B =24572.704940 C =24907.825825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.515 6.515 13 N -0.739 5.739 14 C 0.122 3.878 15 C 0.051 3.949 16 N -0.670 5.670 17 C 0.043 3.957 18 C 0.512 3.488 19 O -0.518 6.518 20 N -0.737 5.737 21 C 0.129 3.871 22 C -0.136 4.136 23 H 0.091 0.909 24 C -0.148 4.148 25 C 0.046 3.954 26 O -0.376 6.376 27 C 0.047 3.953 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.081 0.919 36 H 0.355 0.645 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.400 0.600 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.777 -35.675 -1.757 39.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.388 6.388 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.078 4.078 16 N -0.304 5.304 17 C -0.090 4.090 18 C 0.297 3.703 19 O -0.392 6.392 20 N -0.391 5.391 21 C 0.006 3.994 22 C -0.155 4.155 23 H 0.110 0.890 24 C -0.186 4.186 25 C -0.031 4.031 26 O -0.295 6.295 27 C -0.030 4.030 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.231 0.769 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.175 0.825 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.234 0.766 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.079 0.921 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.617 -36.081 -0.848 38.938 hybrid contribution 3.331 1.479 -1.203 3.838 sum 17.948 -34.602 -2.051 39.033 Atomic orbital electron populations 1.70031 1.05959 1.27348 1.46933 1.24992 0.95013 0.99022 0.94546 0.86118 0.79566 0.81908 0.77902 1.19630 1.20579 1.20557 1.22911 0.94936 0.91668 1.58846 0.90888 1.85433 1.04913 0.96315 1.96704 1.23527 1.06576 0.95339 1.04915 1.20300 0.86517 0.86217 0.75213 1.90718 1.15347 1.85549 1.47222 1.45883 1.09907 1.05408 1.78255 1.21113 0.95586 0.80234 1.03303 1.22118 0.96797 0.87519 1.01366 1.59965 1.17280 1.01144 1.52007 1.21788 0.94344 0.89662 1.03168 1.20616 0.87089 0.86536 0.76040 1.90761 1.14833 1.86214 1.47419 1.45993 1.10102 1.05905 1.77106 1.21374 0.95115 0.79845 1.03078 1.22840 0.97654 0.95774 0.99278 0.89025 1.23151 1.00936 0.93444 1.01046 1.23582 0.98008 0.92625 0.88889 1.88916 1.93092 1.16891 1.30625 1.23305 0.99255 0.87593 0.92811 0.92228 0.89179 0.89245 0.76946 0.90449 0.91647 0.94345 0.90055 0.82492 0.92067 0.87752 0.76612 0.90812 0.90969 0.89725 0.89610 0.92005 0.88635 0.92086 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.99 7.85 -10.98 -0.09 9.91 16 12 O -0.51 -11.96 15.86 5.55 0.09 -11.87 16 13 N -0.74 -9.66 5.56 -60.30 -0.33 -10.00 16 14 C 0.12 1.44 5.93 -4.04 -0.02 1.41 16 15 C 0.05 0.40 5.80 -3.82 -0.02 0.38 16 16 N -0.67 -5.75 6.13 -115.05 -0.70 -6.45 16 17 C 0.04 0.25 6.17 -4.97 -0.03 0.21 16 18 C 0.51 3.95 7.87 -10.98 -0.09 3.86 16 19 O -0.52 -6.49 16.20 5.56 0.09 -6.40 16 20 N -0.74 -3.27 5.28 -60.29 -0.32 -3.59 16 21 C 0.13 0.62 4.79 -4.04 -0.02 0.60 16 22 C -0.14 -0.39 3.12 -89.09 -0.28 -0.67 16 23 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 24 C -0.15 -0.41 6.71 -24.72 -0.17 -0.58 16 25 C 0.05 0.17 7.72 38.21 0.29 0.46 16 26 O -0.38 -2.54 11.52 -35.23 -0.41 -2.94 16 27 C 0.05 0.19 7.07 37.73 0.27 0.46 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.40 3.83 8.47 -40.82 -0.35 3.48 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.36 3.27 8.43 -39.29 -0.33 2.93 16 37 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.40 0.59 8.32 -40.82 -0.34 0.25 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.28 7.87 -51.93 -0.41 -0.13 16 43 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 44 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.09 0.39 7.57 -51.93 -0.39 0.00 16 LS Contribution 408.28 15.07 6.15 6.15 Total: -1.00 -38.90 408.28 -9.37 -48.27 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.70 Total: -0.37 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 0.27 Total: 0.23 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.62 Total: -45.59 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.23 Total: -21.22 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.90 -9.37 -48.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.905 kcal (2) G-P(sol) polarization free energy of solvation -38.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds