Wall clock time and date at job start Wed Apr 1 2020 03:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86796 * 119.99842 * 2 1 4 4 H 1.48500 * 109.46954 * 90.00043 * 3 2 1 5 5 H 1.48500 * 109.47290 * 210.00153 * 3 2 1 6 6 H 1.48497 * 109.47325 * 330.00325 * 3 2 1 7 7 C 1.40033 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99939 * 15.95725 * 7 2 1 9 9 C 1.41333 * 119.99795 * 195.96333 * 7 2 1 10 10 C 1.40611 * 119.78336 * 188.66062 * 9 7 2 11 11 C 1.38313 * 119.12736 * 179.72705 * 10 9 7 12 12 C 1.38690 * 118.67009 * 0.53257 * 11 10 9 13 13 C 1.39647 * 119.49572 * 359.72624 * 12 11 10 14 14 N 1.39249 * 119.57454 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00081 * 18.79051 * 14 13 12 16 16 O 1.21577 * 120.00140 * 5.78879 * 15 14 13 17 17 N 1.34773 * 120.00233 * 185.79003 * 15 14 13 18 18 C 1.48118 * 127.02976 * 359.68153 * 17 15 14 19 19 C 1.54603 * 103.42236 * 219.28319 * 18 17 15 20 20 H 1.08999 * 110.72524 * 81.24752 * 19 18 17 21 21 C 1.50696 * 110.83446 * 204.44757 * 19 18 17 22 22 O 1.20824 * 119.99836 * 113.56692 * 21 19 18 23 23 O 1.34230 * 119.99803 * 293.56189 * 21 19 18 24 24 C 1.54616 * 102.91358 * 322.87218 * 19 18 17 25 25 H 1.08995 * 110.41107 * 262.76346 * 24 19 18 26 26 C 1.52997 * 110.32832 * 140.58481 * 24 19 18 27 27 C 1.53003 * 117.49454 * 131.66851 * 26 24 19 28 28 C 1.53000 * 117.49419 * 63.01366 * 26 24 19 29 29 C 1.47486 * 127.03446 * 179.97438 * 17 15 14 30 30 N 1.31928 * 120.84781 * 0.02562 * 13 12 11 31 31 H 0.97003 * 119.99756 * 174.92768 * 1 2 3 32 32 H 1.08002 * 120.43501 * 359.97438 * 10 9 7 33 33 H 1.08003 * 120.66780 * 180.25531 * 11 10 9 34 34 H 1.07997 * 120.25154 * 179.74886 * 12 11 10 35 35 H 0.97000 * 120.00437 * 198.78853 * 14 13 12 36 36 H 1.08997 * 110.66623 * 337.76804 * 18 17 15 37 37 H 1.09008 * 110.66179 * 100.89126 * 18 17 15 38 38 H 0.96702 * 116.99338 * 179.97438 * 23 21 19 39 39 H 1.08997 * 115.55415 * 277.34305 * 26 24 19 40 40 H 1.08997 * 117.49960 * 0.02562 * 27 26 24 41 41 H 1.09002 * 117.49175 * 145.02044 * 27 26 24 42 42 H 1.09003 * 117.49575 * 214.97461 * 28 26 24 43 43 H 1.08996 * 117.50108 * 359.97213 * 28 26 24 44 44 H 1.09000 * 109.90863 * 273.87369 * 29 17 15 45 45 H 1.08989 * 109.91609 * 35.15419 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0464 1.4001 5 1 3.5389 1.4402 -0.7001 6 1 1.4388 2.6527 -0.6999 7 6 2.0076 -1.2127 -0.0005 8 1 1.4988 -2.1299 -0.2581 9 6 3.3801 -1.2364 0.3361 10 6 4.1223 -2.4174 0.1593 11 6 5.4659 -2.4238 0.4878 12 6 6.0329 -1.2631 0.9925 13 6 5.2415 -0.1234 1.1502 14 7 5.8090 1.0427 1.6573 15 6 7.1469 1.2044 1.6386 16 8 7.8510 0.3820 1.0855 17 7 7.7044 2.2777 2.2332 18 6 6.9998 3.3715 2.9412 19 6 7.7844 4.6354 2.5202 20 1 7.4617 4.9803 1.5379 21 6 7.6288 5.7290 3.5453 22 8 8.5835 6.0925 4.1905 23 8 6.4296 6.2994 3.7413 24 6 9.2463 4.1344 2.4717 25 1 9.7633 4.3798 3.3993 26 6 9.9792 4.7484 1.2772 27 6 11.3544 5.3678 1.5346 28 6 10.1483 6.2689 1.2579 29 6 9.1402 2.6066 2.3069 30 7 3.9628 -0.1376 0.8258 31 1 -0.4850 -0.8368 -0.0743 32 1 3.6505 -3.3068 -0.2316 33 1 6.0605 -3.3160 0.3582 34 1 7.0787 -1.2407 1.2612 35 1 5.2415 1.7387 2.0239 36 1 5.9625 3.4366 2.6131 37 1 7.0548 3.2291 4.0206 38 1 6.3791 6.9963 4.4098 39 1 9.8238 4.2472 0.3219 40 1 11.7371 5.3374 2.5547 41 1 12.1035 5.2742 0.7484 42 1 10.1046 6.7679 0.2898 43 1 9.7371 6.8318 2.0958 44 1 9.5916 2.1082 3.1647 45 1 9.6396 2.2967 1.3891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:20 Heat of formation + Delta-G solvation = -53.252120 kcal Electronic energy + Delta-G solvation = -30248.223064 eV Core-core repulsion = 26038.545483 eV Total energy + Delta-G solvation = -4209.677581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.31055 -40.26540 -38.94888 -38.01060 -36.47498 -36.43913 -34.58845 -33.51787 -31.85136 -31.06107 -30.01399 -29.06803 -25.52878 -25.01572 -24.09306 -22.72544 -21.94663 -21.67615 -21.50980 -20.02025 -19.67312 -18.63488 -18.46164 -18.04171 -17.37551 -16.62046 -16.44016 -15.65138 -15.59656 -15.43116 -14.95760 -14.75504 -14.37030 -14.07338 -13.90541 -13.62063 -13.35361 -13.02848 -13.00595 -12.78601 -12.53102 -12.21229 -12.10471 -12.04637 -11.86153 -11.79360 -11.72676 -11.24876 -11.17150 -10.95611 -10.87677 -10.58321 -10.33526 -10.32127 -9.99946 -9.77861 -9.41587 -9.09010 -8.87220 -8.50373 -7.90083 -7.37894 -7.26272 -4.74486 1.73257 2.28440 2.41394 2.68101 2.69870 3.31577 3.37050 3.45587 3.61751 3.85129 3.92430 3.96572 4.18057 4.21894 4.32898 4.56799 4.60951 4.68039 4.75053 4.88743 4.98053 5.08143 5.11153 5.16335 5.36407 5.39890 5.54660 5.58143 5.61664 5.67225 5.82534 5.84327 5.87118 6.00143 6.09718 6.11843 6.45559 6.56261 6.64785 6.88575 7.17650 7.32535 7.45173 7.47068 7.63513 7.76273 7.86308 8.17247 8.34159 8.62151 8.71199 9.45383 9.98183 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.003148 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.537836 B = 8891.389651 C =10208.493808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.049 3.951 3 Si 1.142 2.858 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.326 1.326 7 C -0.482 4.482 8 H 0.084 0.916 9 C 0.276 3.724 10 C -0.279 4.279 11 C -0.035 4.035 12 C -0.310 4.310 13 C 0.400 3.600 14 N -0.664 5.664 15 C 0.734 3.266 16 O -0.555 6.555 17 N -0.638 5.638 18 C 0.112 3.888 19 C -0.094 4.094 20 H 0.126 0.874 21 C 0.494 3.506 22 O -0.509 6.509 23 O -0.510 6.510 24 C -0.060 4.060 25 H 0.108 0.892 26 C -0.150 4.150 27 C -0.170 4.170 28 C -0.181 4.181 29 C 0.133 3.867 30 N -0.597 5.597 31 H 0.284 0.716 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.140 0.860 35 H 0.402 0.598 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.413 0.587 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.079 13.863 6.691 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.173 4.173 3 Si 0.976 3.024 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.259 1.259 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.152 3.848 10 C -0.302 4.302 11 C -0.060 4.060 12 C -0.335 4.335 13 C 0.168 3.832 14 N -0.312 5.312 15 C 0.436 3.564 16 O -0.430 6.430 17 N -0.378 5.378 18 C -0.012 4.012 19 C -0.114 4.114 20 H 0.144 0.856 21 C 0.335 3.665 22 O -0.397 6.397 23 O -0.321 6.321 24 C -0.079 4.079 25 H 0.126 0.874 26 C -0.168 4.168 27 C -0.207 4.207 28 C -0.218 4.218 29 C 0.010 3.990 30 N -0.322 5.322 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.157 0.843 35 H 0.238 0.762 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.272 0.728 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.055 15.185 6.302 22.980 hybrid contribution 0.074 -1.640 0.475 1.709 sum 16.129 13.545 6.776 22.125 Atomic orbital electron populations 1.70614 1.08263 1.33021 1.30765 1.27639 0.95221 1.05931 0.88465 0.82149 0.72814 0.70130 0.77336 1.21570 1.20709 1.25902 1.20649 0.93142 0.96992 1.40619 0.89817 1.18162 0.92904 0.85966 0.87743 1.21604 0.94667 0.99820 1.14086 1.20912 0.94313 0.96296 0.94451 1.21525 1.01929 0.92769 1.17264 1.17755 0.89559 0.83708 0.92155 1.42328 1.05285 1.20464 1.63088 1.15072 0.81727 0.80689 0.78929 1.90874 1.61317 1.42394 1.48460 1.47808 1.07971 1.23316 1.58683 1.22299 0.97124 0.84000 0.97813 1.22121 0.98406 0.92186 0.98707 0.85572 1.22974 0.80090 0.81590 0.81840 1.90718 1.40394 1.61832 1.46720 1.84567 1.34805 1.52833 1.59944 1.21780 0.92589 0.93966 0.99557 0.87436 1.22344 0.99777 0.95602 0.99082 1.23005 0.90960 1.03804 1.02969 1.22995 1.03016 0.92563 1.03175 1.21949 0.80795 0.92791 1.03451 1.66121 1.10111 1.30390 1.25602 0.90454 0.87729 0.87671 0.84258 0.76234 0.88799 0.90019 0.72815 0.87035 0.88509 0.88675 0.88745 0.88659 0.90931 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.70 13.65 55.55 0.76 -20.94 16 2 C 0.05 1.33 5.51 -17.34 -0.10 1.23 16 3 Si 1.14 27.37 25.93 -169.99 -4.41 22.96 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.90 6.55 56.52 0.37 -6.53 16 6 H -0.33 -7.67 7.11 56.52 0.40 -7.27 16 7 C -0.48 -13.09 9.51 -37.73 -0.36 -13.45 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 9 C 0.28 7.28 6.27 -85.00 -0.53 6.75 16 10 C -0.28 -6.71 9.83 -38.66 -0.38 -7.09 16 11 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 12 C -0.31 -7.08 8.83 -38.89 -0.34 -7.43 16 13 C 0.40 9.25 7.51 -154.99 -1.16 8.08 16 14 N -0.66 -12.50 5.38 -15.79 -0.08 -12.59 16 15 C 0.73 12.67 8.38 -86.92 -0.73 11.95 16 16 O -0.56 -11.32 13.48 5.30 0.07 -11.25 16 17 N -0.64 -7.95 3.29 -175.68 -0.58 -8.53 16 18 C 0.11 1.05 6.39 -2.31 -0.01 1.03 16 19 C -0.09 -0.77 2.87 -90.08 -0.26 -1.03 16 20 H 0.13 0.99 7.86 -51.93 -0.41 0.58 16 21 C 0.49 4.05 7.29 36.00 0.26 4.31 16 22 O -0.51 -5.23 15.38 -18.75 -0.29 -5.52 16 23 O -0.51 -3.31 13.42 -39.26 -0.53 -3.84 16 24 C -0.06 -0.49 2.57 -89.23 -0.23 -0.72 16 25 H 0.11 0.92 6.67 -51.93 -0.35 0.57 16 26 C -0.15 -1.17 4.87 -90.62 -0.44 -1.62 16 27 C -0.17 -1.23 10.19 -26.69 -0.27 -1.50 16 28 C -0.18 -1.36 10.00 -26.69 -0.27 -1.63 16 29 C 0.13 1.34 6.62 -2.96 -0.02 1.32 16 30 N -0.60 -15.14 5.08 -10.26 -0.05 -15.20 16 31 H 0.28 7.34 8.73 -40.82 -0.36 6.98 16 32 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 33 H 0.11 1.99 8.06 -52.48 -0.42 1.57 16 34 H 0.14 3.14 5.33 -52.51 -0.28 2.86 16 35 H 0.40 6.64 7.14 -40.82 -0.29 6.35 16 36 H 0.09 0.86 6.78 -51.93 -0.35 0.50 16 37 H 0.08 0.68 8.04 -51.92 -0.42 0.26 16 38 H 0.41 1.00 9.10 45.56 0.41 1.41 16 39 H 0.11 0.92 7.93 -51.93 -0.41 0.51 16 40 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.80 6.93 -51.93 -0.36 0.44 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.96 7.46 -51.94 -0.39 0.57 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -33.19 371.82 -9.73 -42.92 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.98 Total: 7.35 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -5.24 Total: -0.98 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.04 Total: -57.25 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.74 Total: -20.61 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -4.41 Total: 22.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.19 -9.73 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.335 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds