Wall clock time and date at job start Wed Apr 1 2020 03:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48492 * 109.47254 * 240.00660 * 3 2 1 5 5 H 1.48507 * 109.47266 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47050 * 120.00245 * 3 2 1 7 7 C 1.40023 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99715 * 179.97438 * 7 2 1 9 9 C 1.41328 * 120.00382 * 359.97438 * 7 2 1 10 10 C 1.40610 * 119.79069 * 180.02562 * 9 7 2 11 11 C 1.38310 * 119.13355 * 180.02562 * 10 9 7 12 12 C 1.38693 * 118.66953 * 359.97438 * 11 10 9 13 13 C 1.39650 * 119.49498 * 0.02562 * 12 11 10 14 14 N 1.39248 * 119.57446 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00235 * 174.60010 * 14 13 12 16 16 O 1.21576 * 119.99731 * 5.17748 * 15 14 13 17 17 N 1.34770 * 120.00470 * 185.17384 * 15 14 13 18 18 C 1.46503 * 120.00478 * 179.97438 * 17 15 14 19 19 H 1.09004 * 112.83741 * 28.60882 * 18 17 15 20 20 C 1.53785 * 113.60561 * 159.77152 * 18 17 15 21 21 C 1.53493 * 87.06107 * 140.59144 * 20 18 17 22 22 H 1.08998 * 115.58799 * 92.55050 * 21 20 18 23 23 C 1.53684 * 114.17651 * 228.76856 * 21 20 18 24 24 C 1.53593 * 106.21193 * 65.77414 * 23 21 20 25 25 H 1.08998 * 109.88954 * 258.17917 * 24 23 21 26 26 C 1.50693 * 109.88789 * 137.14511 * 24 23 21 27 27 O 1.20826 * 119.99987 * 241.45174 * 26 24 23 28 28 O 1.34229 * 120.00192 * 61.45766 * 26 24 23 29 29 C 1.53474 * 107.21077 * 17.74667 * 24 23 21 30 30 C 1.53733 * 107.37727 * 359.32692 * 29 24 23 31 31 H 1.09001 * 115.49072 * 113.87329 * 30 29 24 32 32 N 1.31929 * 120.84935 * 359.97438 * 13 12 11 33 33 H 0.97003 * 119.99496 * 359.97438 * 1 2 3 34 34 H 1.07997 * 120.43376 * 0.02562 * 10 9 7 35 35 H 1.07994 * 120.67068 * 179.72720 * 11 10 9 36 36 H 1.07999 * 120.25286 * 179.97438 * 12 11 10 37 37 H 0.97006 * 119.99744 * 354.60666 * 14 13 12 38 38 H 0.97003 * 119.99508 * 0.02562 * 17 15 14 39 39 H 1.09002 * 113.61732 * 255.13333 * 20 18 17 40 40 H 1.08997 * 113.61685 * 25.96361 * 20 18 17 41 41 H 1.08993 * 110.10925 * 184.96378 * 23 21 20 42 42 H 1.08999 * 110.10475 * 306.53013 * 23 21 20 43 43 H 0.96707 * 117.00078 * 179.97438 * 28 26 24 44 44 H 1.09001 * 109.86661 * 118.77815 * 29 24 23 45 45 H 1.08997 * 109.86497 * 239.87785 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2765 2.7465 0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0084 -3.6518 -0.0005 11 6 1.3031 -4.8415 -0.0011 12 6 -0.0830 -4.7934 -0.0011 13 6 -0.7280 -3.5548 -0.0010 14 7 -2.1195 -3.5046 -0.0016 15 6 -2.7511 -2.3191 0.1083 16 8 -2.1093 -1.2866 0.1130 17 7 -4.0942 -2.2781 0.2128 18 6 -4.7807 -0.9895 0.3328 19 1 -4.2392 -0.1752 -0.1488 20 6 -6.2700 -1.0476 -0.0461 21 6 -6.5251 -0.0950 1.1301 22 1 -6.5242 0.9670 0.8846 23 6 -7.6646 -0.5366 2.0620 24 6 -7.1943 -1.8387 2.7272 25 1 -7.6685 -2.6936 2.2454 26 6 -7.5408 -1.8194 4.1936 27 8 -6.6636 -1.8761 5.0225 28 8 -8.8241 -1.7393 4.5790 29 6 -5.6715 -1.9141 2.5515 30 6 -5.2375 -0.6654 1.7667 31 1 -4.6149 0.0409 2.3160 32 7 -0.0358 -2.4317 -0.0005 33 1 -0.4849 0.8401 0.0004 34 1 3.0883 -3.6560 -0.0001 35 1 1.8213 -5.7890 -0.0055 36 1 -0.6591 -5.7069 -0.0019 37 1 -2.6343 -4.3229 -0.0809 38 1 -4.6062 -3.1020 0.2093 39 1 -6.4905 -0.6087 -1.0192 40 1 -6.7156 -2.0337 0.0843 41 1 -7.8467 0.2263 2.8188 42 1 -8.5720 -0.7160 1.4854 43 1 -8.9971 -1.7304 5.5304 44 1 -5.1861 -1.9256 3.5274 45 1 -5.4071 -2.8125 1.9937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:51 Heat of formation + Delta-G solvation = -59.861903 kcal Electronic energy + Delta-G solvation = -30331.893357 eV Core-core repulsion = 26121.929154 eV Total energy + Delta-G solvation = -4209.964203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.30728 -41.11000 -40.48799 -39.20609 -37.14920 -35.92397 -35.11832 -34.79554 -33.07968 -32.16366 -30.75401 -29.74744 -27.51242 -27.00141 -24.81868 -24.26640 -23.27022 -22.66818 -21.51242 -20.62063 -19.82508 -19.64750 -18.96318 -18.60430 -18.14140 -17.93041 -16.96726 -16.62965 -16.36887 -16.25684 -16.18464 -15.76729 -15.52918 -15.38826 -14.83127 -14.62192 -14.38471 -14.07329 -13.92108 -13.71129 -13.45409 -12.95969 -12.85194 -12.72064 -12.62292 -12.55349 -12.48352 -12.31472 -12.29752 -11.87399 -11.77852 -11.74734 -11.62007 -11.42976 -11.27701 -11.01059 -10.83569 -10.76622 -9.87363 -9.68574 -9.07368 -8.74945 -7.99919 -6.39191 0.99651 1.19667 1.30809 1.39015 1.50707 1.54354 1.89406 2.11895 2.27522 2.60891 3.06118 3.21670 3.42926 3.60394 3.65324 3.82993 4.07406 4.10450 4.22104 4.34727 4.38178 4.45809 4.55527 4.67503 4.72956 4.76493 4.80986 4.85844 4.93609 4.98328 5.03668 5.08371 5.09357 5.20803 5.22857 5.29295 5.39659 5.47306 5.63742 5.69845 5.85581 5.89694 5.95037 6.08126 6.35580 6.45788 6.84388 6.98650 7.09931 7.33771 8.09473 8.41592 8.60550 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012687 B = 0.002958 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.504042 B = 9463.927928 C =10461.273427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.682 5.682 2 C 0.009 3.991 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.467 4.467 8 H 0.085 0.915 9 C 0.236 3.764 10 C -0.332 4.332 11 C -0.034 4.034 12 C -0.347 4.347 13 C 0.365 3.635 14 N -0.662 5.662 15 C 0.655 3.345 16 O -0.517 6.517 17 N -0.722 5.722 18 C 0.145 3.855 19 H 0.079 0.921 20 C -0.112 4.112 21 C -0.098 4.098 22 H 0.111 0.889 23 C -0.089 4.089 24 C -0.077 4.077 25 H 0.145 0.855 26 C 0.486 3.514 27 O -0.558 6.558 28 O -0.506 6.506 29 C -0.097 4.097 30 C -0.139 4.139 31 H 0.052 0.948 32 N -0.507 5.507 33 H 0.268 0.732 34 H 0.103 0.897 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.417 0.583 38 H 0.404 0.596 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.425 0.575 44 H 0.054 0.946 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.139 -3.273 2.051 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.301 5.301 2 C -0.217 4.217 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.498 4.498 8 H 0.103 0.897 9 C 0.111 3.889 10 C -0.355 4.355 11 C -0.059 4.059 12 C -0.373 4.373 13 C 0.125 3.875 14 N -0.313 5.313 15 C 0.353 3.647 16 O -0.385 6.385 17 N -0.381 5.381 18 C 0.039 3.961 19 H 0.097 0.903 20 C -0.150 4.150 21 C -0.117 4.117 22 H 0.129 0.871 23 C -0.126 4.126 24 C -0.096 4.096 25 H 0.162 0.838 26 C 0.330 3.670 27 O -0.449 6.449 28 O -0.320 6.320 29 C -0.135 4.135 30 C -0.159 4.159 31 H 0.071 0.929 32 N -0.226 5.226 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.254 0.746 38 H 0.241 0.759 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.085 0.915 42 H 0.130 0.870 43 H 0.287 0.713 44 H 0.072 0.928 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.916 -1.347 1.871 23.031 hybrid contribution 0.935 -0.795 1.001 1.584 sum -21.980 -2.141 2.872 22.270 Atomic orbital electron populations 1.70567 1.07061 1.27775 1.24693 1.27044 0.96056 1.03918 0.94669 0.85418 0.78665 0.76693 0.79823 1.18330 1.19927 1.18678 1.19855 0.94370 0.90524 1.45086 0.89737 1.18890 0.88024 0.93381 0.88643 1.21796 0.99150 0.93886 1.20715 1.21023 0.93558 0.97288 0.93988 1.20922 0.95122 0.95601 1.25618 1.18858 0.84357 0.91006 0.93250 1.42426 1.03806 1.09084 1.75994 1.16834 0.83161 0.84759 0.79922 1.91371 1.64041 1.31714 1.51326 1.45032 1.03526 1.09710 1.79825 1.22341 0.92684 0.85411 0.95644 0.90313 1.23212 0.91623 1.01285 0.98865 1.22964 0.92829 1.00212 0.95707 0.87088 1.21810 0.99113 0.93759 0.97959 1.21599 0.96854 1.03789 0.87344 0.83779 1.23817 0.79856 0.69989 0.93332 1.90734 1.50490 1.47735 1.55959 1.84498 1.27854 1.84632 1.34969 1.21705 0.93107 0.98251 1.00445 1.23637 0.98477 0.97527 0.96276 0.92944 1.68663 1.07146 1.25396 1.21382 0.92137 0.87872 0.84521 0.85035 0.74638 0.75892 0.89356 0.87008 0.91534 0.86987 0.71332 0.92762 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -40.73 8.98 21.84 0.20 -40.53 16 2 C 0.01 0.50 5.50 85.29 0.47 0.97 16 3 Si 0.97 42.19 29.56 68.60 2.03 44.21 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.47 -27.56 9.14 23.46 0.21 -27.34 16 8 H 0.08 4.66 7.85 -2.91 -0.02 4.63 16 9 C 0.24 14.13 6.55 40.20 0.26 14.39 16 10 C -0.33 -17.36 9.83 22.87 0.22 -17.13 16 11 C -0.03 -1.54 10.15 22.40 0.23 -1.31 16 12 C -0.35 -15.19 9.96 22.72 0.23 -14.97 16 13 C 0.37 18.22 7.43 133.24 0.99 19.21 16 14 N -0.66 -26.13 5.39 -322.14 -1.74 -27.87 16 15 C 0.65 27.16 8.52 179.06 1.53 28.69 16 16 O -0.52 -27.80 11.77 -3.96 -0.05 -27.85 16 17 N -0.72 -19.98 4.39 -455.03 -2.00 -21.98 16 18 C 0.15 3.72 4.02 45.58 0.18 3.90 16 19 H 0.08 2.62 7.58 -2.38 -0.02 2.60 16 20 C -0.11 -1.58 7.02 31.02 0.22 -1.37 16 21 C -0.10 -1.50 4.87 -9.87 -0.05 -1.55 16 22 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 23 C -0.09 -1.01 5.96 31.02 0.18 -0.83 16 24 C -0.08 -1.09 2.90 -11.18 -0.03 -1.12 16 25 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 26 C 0.49 8.89 7.41 71.23 0.53 9.42 16 27 O -0.56 -15.57 15.94 21.96 0.35 -15.22 16 28 O -0.51 -5.85 13.39 -51.41 -0.69 -6.54 16 29 C -0.10 -2.10 5.45 31.00 0.17 -1.93 16 30 C -0.14 -3.38 5.00 -9.70 -0.05 -3.43 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 N -0.51 -30.12 5.74 -186.37 -1.07 -31.19 16 33 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 34 H 0.10 5.03 8.06 -2.91 -0.02 5.00 16 35 H 0.14 4.89 8.06 -2.91 -0.02 4.87 16 36 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.42 11.83 8.71 -92.70 -0.81 11.02 16 38 H 0.40 7.69 7.79 -92.71 -0.72 6.97 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.11 1.02 7.43 -2.39 -0.02 1.00 16 41 H 0.07 0.85 7.75 -2.39 -0.02 0.84 16 42 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.43 1.86 9.10 -74.05 -0.67 1.18 16 44 H 0.05 1.59 6.36 -2.39 -0.02 1.57 16 45 H 0.09 1.66 6.13 -2.39 -0.01 1.65 16 Total: -1.00 -87.33 368.04 1.20 -86.13 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -1.13 Total: 35.23 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 5.29 Total: 5.60 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -4.61 Total: -121.56 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -0.38 Total: -49.61 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -87.33 1.20 -86.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.264 kcal (2) G-P(sol) polarization free energy of solvation -87.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds