Wall clock time and date at job start Wed Apr 1 2020 03:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46497 * 119.99984 * 2 1 4 4 C 1.50698 * 109.47027 * 269.99754 * 3 2 1 5 5 H 1.08007 * 120.00169 * 0.02562 * 4 3 2 6 6 C 1.37887 * 120.00261 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99392 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00198 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47243 * 59.99513 * 8 6 4 10 10 H 1.48500 * 109.47352 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47038 * 299.99876 * 8 6 4 12 12 C 1.34773 * 120.00170 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00393 * 180.02562 * 12 2 1 14 14 C 1.50704 * 119.99811 * 359.97438 * 12 2 1 15 15 N 1.46503 * 109.46911 * 179.97438 * 14 12 2 16 16 C 1.33798 * 124.17664 * 90.03149 * 15 14 12 17 17 O 1.21536 * 123.76975 * 359.96236 * 16 15 14 18 18 N 1.34521 * 112.45924 * 179.97438 * 16 15 14 19 19 C 1.47320 * 106.61909 * 0.02562 * 18 16 15 20 20 C 1.53000 * 110.59878 * 118.68227 * 19 18 16 21 21 C 1.50706 * 110.59560 * 241.47222 * 19 18 16 22 22 C 1.38240 * 119.99443 * 148.27314 * 21 19 18 23 23 C 1.38234 * 119.99442 * 179.74020 * 22 21 19 24 24 C 1.38240 * 120.00224 * 0.55649 * 23 22 21 25 25 C 1.38242 * 119.99808 * 359.69714 * 24 23 22 26 26 C 1.38231 * 120.00110 * 328.54600 * 21 19 18 27 27 C 1.34765 * 124.17854 * 269.98583 * 15 14 12 28 28 O 1.21234 * 127.15890 * 0.08596 * 27 15 14 29 29 H 1.09000 * 109.47564 * 270.00111 * 1 2 3 30 30 H 1.08996 * 109.47645 * 30.00270 * 1 2 3 31 31 H 1.09002 * 109.47576 * 150.00357 * 1 2 3 32 32 H 1.08993 * 109.47195 * 30.00099 * 3 2 1 33 33 H 1.09000 * 109.47176 * 149.99843 * 3 2 1 34 34 H 0.97001 * 119.99737 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46982 * 60.00901 * 14 12 2 36 36 H 1.08991 * 109.47818 * 300.00476 * 14 12 2 37 37 H 0.96999 * 126.69652 * 179.97438 * 18 16 15 38 38 H 1.09007 * 109.46730 * 182.82946 * 20 19 18 39 39 H 1.08995 * 109.47130 * 302.82502 * 20 19 18 40 40 H 1.08994 * 109.47261 * 62.82817 * 20 19 18 41 41 H 1.07996 * 120.00036 * 359.97438 * 22 21 19 42 42 H 1.07992 * 119.99977 * 180.27115 * 23 22 21 43 43 H 1.07992 * 120.00192 * 179.72374 * 24 23 22 44 44 H 1.07998 * 119.99676 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00249 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0960 -2.2418 6 6 3.1269 2.8774 -1.6728 7 7 3.5541 3.6175 -0.6732 8 14 3.4376 3.4169 -3.4340 9 1 2.1399 3.5952 -4.1334 10 1 4.1802 4.7029 -3.4341 11 1 4.2394 2.3817 -4.1346 12 6 2.1388 -1.1671 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0017 15 7 2.3374 -3.5858 0.0014 16 6 2.8262 -4.1569 1.1082 17 8 2.5305 -3.8096 2.2348 18 7 3.6816 -5.1585 0.8348 19 6 3.7631 -5.2541 -0.6330 20 6 5.1930 -4.9938 -1.1109 21 6 3.2860 -6.6040 -1.1036 22 6 2.6619 -6.7271 -2.3309 23 6 2.2291 -7.9662 -2.7649 24 6 2.4100 -9.0802 -1.9666 25 6 3.0294 -8.9561 -0.7370 26 6 3.4674 -7.7180 -0.3055 27 6 2.8283 -4.1619 -1.1136 28 8 2.5762 -3.8668 -2.2621 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6084 2.0283 0.5138 33 1 3.1498 1.1384 0.5139 34 1 4.0316 4.4431 -0.8504 35 1 0.7584 -2.5307 -0.8881 36 1 0.7589 -2.5295 0.8918 37 1 4.1535 -5.7097 1.4786 38 1 5.2223 -5.0193 -2.2002 39 1 5.5202 -4.0145 -0.7615 40 1 5.8551 -5.7619 -0.7115 41 1 2.5159 -5.8560 -2.9522 42 1 1.7454 -8.0631 -3.7256 43 1 2.0679 -10.0474 -2.3037 44 1 3.1711 -9.8265 -0.1135 45 1 3.9506 -7.6210 0.6555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023104175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:21 Heat of formation + Delta-G solvation = -33.668552 kcal Electronic energy + Delta-G solvation = -30755.063049 eV Core-core repulsion = 26546.234675 eV Total energy + Delta-G solvation = -4208.828374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.75547 -39.62986 -38.86406 -38.53419 -36.43579 -35.26389 -34.71755 -32.64278 -31.96084 -31.23035 -29.64642 -29.26282 -27.39208 -25.76015 -24.98679 -23.34362 -23.18592 -22.77496 -21.41619 -20.48976 -18.79706 -18.14747 -17.59139 -16.99557 -16.54406 -16.50993 -15.90548 -15.83172 -15.74660 -15.30672 -14.85249 -14.78425 -14.66638 -14.30244 -14.21701 -14.00190 -13.73143 -13.41559 -12.87682 -12.83994 -12.72658 -12.67376 -12.45580 -12.20269 -11.89363 -11.81188 -11.67004 -11.46426 -11.21317 -10.91433 -10.84372 -10.56745 -10.26827 -10.18170 -10.12499 -9.71416 -9.64970 -9.26379 -9.15144 -8.88697 -8.42907 -7.70962 -6.04007 -4.08912 0.88859 1.05670 1.58934 2.05760 2.90539 3.00609 3.26227 3.33187 3.37116 3.41694 3.44158 3.72331 3.93668 4.03928 4.45303 4.54420 4.59190 4.69765 4.81894 4.90361 4.98854 5.13216 5.20353 5.21428 5.30270 5.31294 5.35202 5.43529 5.54614 5.56095 5.63878 5.73321 5.84876 5.90213 6.08989 6.15397 6.17892 6.18477 6.59932 6.64406 6.98208 6.99432 7.31042 7.41789 7.48662 7.91647 8.06334 8.22275 8.31341 8.84825 8.99895 9.55882 11.04151 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.002931 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.837503 B = 9549.473394 C =10174.080058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.596 5.596 3 C 0.246 3.754 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.494 3.506 13 O -0.531 6.531 14 C 0.098 3.902 15 N -0.556 5.556 16 C 0.713 3.287 17 O -0.537 6.537 18 N -0.719 5.719 19 C 0.168 3.832 20 C -0.144 4.144 21 C -0.092 4.092 22 C -0.107 4.107 23 C -0.115 4.115 24 C -0.114 4.114 25 C -0.120 4.120 26 C -0.098 4.098 27 C 0.542 3.458 28 O -0.456 6.456 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.437 0.563 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.142 0.858 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -25.982 -0.088 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C 0.127 3.873 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.278 3.722 13 O -0.408 6.408 14 C -0.027 4.027 15 N -0.300 5.300 16 C 0.414 3.586 17 O -0.410 6.410 18 N -0.384 5.384 19 C 0.077 3.923 20 C -0.202 4.202 21 C -0.093 4.093 22 C -0.125 4.125 23 C -0.133 4.133 24 C -0.132 4.132 25 C -0.138 4.138 26 C -0.116 4.116 27 C 0.328 3.672 28 O -0.324 6.324 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.282 0.718 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.159 0.841 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.406 -25.310 -0.064 25.538 hybrid contribution 0.327 0.239 -0.668 0.782 sum -3.078 -25.071 -0.732 25.269 Atomic orbital electron populations 1.21722 0.81127 1.02850 1.00818 1.48109 1.06339 1.07525 1.70935 1.19326 0.92599 0.77707 0.97619 1.21391 1.36718 1.06353 0.92190 0.92442 1.24937 0.95301 0.96349 0.97489 1.69928 1.38250 1.14380 1.30810 0.86547 0.78416 0.77799 0.84615 1.20184 1.21162 1.20143 1.20311 0.88446 0.85118 0.78348 1.90683 1.13539 1.86834 1.49779 1.21663 0.90688 0.84047 1.06347 1.45793 1.43487 1.32687 1.08068 1.15702 0.79097 0.79664 0.84136 1.91008 1.63201 1.66472 1.20304 1.45543 1.48631 1.37537 1.06646 1.20120 0.97951 0.92652 0.81546 1.22021 0.90860 1.04065 1.03261 1.19440 1.01203 0.92609 0.96043 1.21438 0.96496 0.99080 0.95527 1.21181 0.99823 0.92290 1.00032 1.21261 0.98573 0.98806 0.94559 1.21118 0.98930 0.97190 0.96592 1.20828 0.99696 0.91921 0.99140 1.20482 0.79792 0.81985 0.84973 1.90762 1.59143 1.64777 1.17733 0.93218 0.90265 0.92519 0.94697 0.93806 0.92637 0.86244 0.86105 0.71764 0.89607 0.90104 0.90177 0.84057 0.85535 0.85847 0.85682 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.24 59.84 0.61 1.84 16 2 N -0.60 -12.90 2.86 -182.97 -0.52 -13.42 16 3 C 0.25 6.57 5.16 -5.20 -0.03 6.54 16 4 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 C 0.49 10.68 7.74 -10.99 -0.09 10.59 16 13 O -0.53 -13.84 16.01 5.56 0.09 -13.75 16 14 C 0.10 1.56 4.73 -5.19 -0.02 1.54 16 15 N -0.56 -8.93 2.09 -122.02 -0.26 -9.19 16 16 C 0.71 11.16 8.62 -88.02 -0.76 10.40 16 17 O -0.54 -9.93 17.48 5.33 0.09 -9.83 16 18 N -0.72 -8.15 5.29 -54.01 -0.29 -8.43 16 19 C 0.17 1.94 1.17 -133.24 -0.16 1.78 16 20 C -0.14 -1.49 8.97 37.16 0.33 -1.16 16 21 C -0.09 -0.91 4.88 -104.62 -0.51 -1.42 16 22 C -0.11 -1.09 9.18 -39.58 -0.36 -1.46 16 23 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 24 C -0.11 -0.82 10.05 -39.58 -0.40 -1.21 16 25 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 26 C -0.10 -0.78 9.35 -39.59 -0.37 -1.15 16 27 C 0.54 8.24 6.53 -10.55 -0.07 8.17 16 28 O -0.46 -7.73 15.67 5.60 0.09 -7.64 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 31 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.12 1.63 7.26 -51.93 -0.38 1.25 16 36 H 0.12 1.65 7.83 -51.93 -0.41 1.25 16 37 H 0.44 3.57 8.10 -40.82 -0.33 3.24 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.14 1.61 5.77 -52.49 -0.30 1.31 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 44 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.12 0.73 6.95 -52.49 -0.36 0.37 16 LS Contribution 383.88 15.07 5.78 5.78 Total: -1.00 -37.79 383.88 -8.17 -45.96 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.84 Total: 1.51 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: -3.03 Total: 18.03 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.33 Total: -57.23 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: 0.27 Total: -31.22 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.79 -8.17 -45.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023104175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.293 kcal (2) G-P(sol) polarization free energy of solvation -37.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds