Wall clock time and date at job start Wed Apr 1 2020 03:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46497 * 119.99984 * 2 1 4 4 C 1.50698 * 109.47027 * 269.99754 * 3 2 1 5 5 H 1.08007 * 120.00169 * 0.02562 * 4 3 2 6 6 C 1.37887 * 120.00261 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99392 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00198 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47243 * 59.99513 * 8 6 4 10 10 H 1.48500 * 109.47352 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47038 * 299.99876 * 8 6 4 12 12 C 1.34773 * 120.00170 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00393 * 180.02562 * 12 2 1 14 14 C 1.50704 * 119.99811 * 359.97438 * 12 2 1 15 15 N 1.46503 * 109.46911 * 179.97438 * 14 12 2 16 16 C 1.33798 * 124.17664 * 90.03149 * 15 14 12 17 17 O 1.21536 * 123.76975 * 359.96236 * 16 15 14 18 18 N 1.34521 * 112.45924 * 179.97438 * 16 15 14 19 19 C 1.47320 * 106.61909 * 0.02562 * 18 16 15 20 20 C 1.53000 * 110.59878 * 118.68227 * 19 18 16 21 21 C 1.50706 * 110.59560 * 241.47222 * 19 18 16 22 22 C 1.38240 * 119.99443 * 148.27314 * 21 19 18 23 23 C 1.38234 * 119.99442 * 179.74020 * 22 21 19 24 24 C 1.38240 * 120.00224 * 0.55649 * 23 22 21 25 25 C 1.38242 * 119.99808 * 359.69714 * 24 23 22 26 26 C 1.38231 * 120.00110 * 328.54600 * 21 19 18 27 27 C 1.34765 * 124.17854 * 269.98583 * 15 14 12 28 28 O 1.21234 * 127.15890 * 0.08596 * 27 15 14 29 29 H 1.09000 * 109.47564 * 270.00111 * 1 2 3 30 30 H 1.08996 * 109.47645 * 30.00270 * 1 2 3 31 31 H 1.09002 * 109.47576 * 150.00357 * 1 2 3 32 32 H 1.08993 * 109.47195 * 30.00099 * 3 2 1 33 33 H 1.09000 * 109.47176 * 149.99843 * 3 2 1 34 34 H 0.97001 * 119.99737 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46982 * 60.00901 * 14 12 2 36 36 H 1.08991 * 109.47818 * 300.00476 * 14 12 2 37 37 H 0.96999 * 126.69652 * 179.97438 * 18 16 15 38 38 H 1.09007 * 109.46730 * 182.82946 * 20 19 18 39 39 H 1.08995 * 109.47130 * 302.82502 * 20 19 18 40 40 H 1.08994 * 109.47261 * 62.82817 * 20 19 18 41 41 H 1.07996 * 120.00036 * 359.97438 * 22 21 19 42 42 H 1.07992 * 119.99977 * 180.27115 * 23 22 21 43 43 H 1.07992 * 120.00192 * 179.72374 * 24 23 22 44 44 H 1.07998 * 119.99676 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00249 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0960 -2.2418 6 6 3.1269 2.8774 -1.6728 7 7 3.5541 3.6175 -0.6732 8 14 3.4376 3.4169 -3.4340 9 1 2.1399 3.5952 -4.1334 10 1 4.1802 4.7029 -3.4341 11 1 4.2394 2.3817 -4.1346 12 6 2.1388 -1.1671 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0017 15 7 2.3374 -3.5858 0.0014 16 6 2.8262 -4.1569 1.1082 17 8 2.5305 -3.8096 2.2348 18 7 3.6816 -5.1585 0.8348 19 6 3.7631 -5.2541 -0.6330 20 6 5.1930 -4.9938 -1.1109 21 6 3.2860 -6.6040 -1.1036 22 6 2.6619 -6.7271 -2.3309 23 6 2.2291 -7.9662 -2.7649 24 6 2.4100 -9.0802 -1.9666 25 6 3.0294 -8.9561 -0.7370 26 6 3.4674 -7.7180 -0.3055 27 6 2.8283 -4.1619 -1.1136 28 8 2.5762 -3.8668 -2.2621 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6084 2.0283 0.5138 33 1 3.1498 1.1384 0.5139 34 1 4.0316 4.4431 -0.8504 35 1 0.7584 -2.5307 -0.8881 36 1 0.7589 -2.5295 0.8918 37 1 4.1535 -5.7097 1.4786 38 1 5.2223 -5.0193 -2.2002 39 1 5.5202 -4.0145 -0.7615 40 1 5.8551 -5.7619 -0.7115 41 1 2.5159 -5.8560 -2.9522 42 1 1.7454 -8.0631 -3.7256 43 1 2.0679 -10.0474 -2.3037 44 1 3.1711 -9.8265 -0.1135 45 1 3.9506 -7.6210 0.6555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023104175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:20 Heat of formation + Delta-G solvation = -60.053762 kcal Electronic energy + Delta-G solvation = -30756.207197 eV Core-core repulsion = 26546.234675 eV Total energy + Delta-G solvation = -4209.972523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.88329 -40.78460 -40.20870 -39.65616 -37.56553 -36.80977 -36.19565 -34.77892 -32.85279 -31.85555 -30.87652 -30.41051 -29.07664 -27.33813 -26.07402 -24.97989 -24.19562 -23.71853 -22.44113 -21.55300 -20.30830 -19.28227 -18.80221 -18.65743 -18.19832 -17.60726 -17.32651 -17.01598 -16.74317 -16.64745 -16.45892 -16.16194 -15.71950 -15.58422 -15.28235 -15.10525 -14.63188 -14.51563 -14.33433 -14.13465 -13.86881 -13.60791 -13.55235 -13.52262 -13.33588 -13.23134 -13.17842 -12.82018 -12.58486 -12.39403 -12.23286 -12.17676 -11.95844 -11.77201 -11.65559 -11.27601 -10.76550 -10.67553 -10.50897 -9.86441 -9.80051 -9.52674 -8.25938 -6.40930 0.22724 0.42634 0.47507 0.90317 1.34097 1.38634 1.45889 1.61376 1.74030 1.96445 2.28095 2.41412 2.66353 2.83681 3.03711 3.21892 3.51514 3.63379 3.76790 3.99117 4.02233 4.12086 4.19083 4.28543 4.34194 4.41643 4.50645 4.55100 4.59174 4.68655 4.70529 4.91332 4.93900 4.96328 5.00954 5.12999 5.16751 5.48874 5.49256 5.52294 5.59950 5.66619 5.75759 5.83614 6.00939 6.03446 6.16255 6.57497 6.68408 6.94188 7.18126 7.33323 8.81382 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.002931 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.837503 B = 9549.473394 C =10174.080058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.603 5.603 3 C 0.261 3.739 4 C -0.545 4.545 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.258 1.258 10 H -0.276 1.276 11 H -0.280 1.280 12 C 0.482 3.518 13 O -0.589 6.589 14 C 0.106 3.894 15 N -0.565 5.565 16 C 0.707 3.293 17 O -0.571 6.571 18 N -0.695 5.695 19 C 0.178 3.822 20 C -0.142 4.142 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.111 4.111 25 C -0.119 4.119 26 C -0.099 4.099 27 C 0.531 3.469 28 O -0.480 6.480 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.029 0.971 33 H -0.005 1.005 34 H 0.268 0.732 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.453 0.547 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.140 0.860 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 -28.908 -0.826 29.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.139 3.861 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.791 3.209 9 H -0.182 1.182 10 H -0.201 1.201 11 H -0.205 1.205 12 C 0.269 3.731 13 O -0.470 6.470 14 C -0.018 4.018 15 N -0.309 5.309 16 C 0.408 3.592 17 O -0.446 6.446 18 N -0.361 5.361 19 C 0.088 3.912 20 C -0.200 4.200 21 C -0.104 4.104 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.129 4.129 25 C -0.136 4.136 26 C -0.117 4.117 27 C 0.319 3.681 28 O -0.350 6.350 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.047 0.953 33 H 0.013 0.987 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.302 0.698 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.157 0.843 43 H 0.167 0.833 44 H 0.171 0.829 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.417 -28.283 -0.801 28.637 hybrid contribution 0.620 1.092 -0.425 1.326 sum -3.797 -27.191 -1.226 27.483 Atomic orbital electron populations 1.22078 0.77214 1.04590 1.03192 1.48133 1.08786 1.06007 1.70545 1.18788 0.91069 0.80034 0.96179 1.21645 1.37158 1.06659 0.92856 0.92931 1.25868 0.94789 0.96349 1.02085 1.70047 1.38727 1.14825 1.33123 0.85473 0.78978 0.77358 0.79054 1.18234 1.20091 1.20530 1.21323 0.88207 0.86773 0.76844 1.90642 1.16233 1.87872 1.52224 1.21692 0.90268 0.80939 1.08930 1.45970 1.43754 1.32544 1.08673 1.15881 0.79514 0.80231 0.83538 1.90979 1.64614 1.67707 1.21338 1.45436 1.47219 1.36313 1.07121 1.20111 0.97520 0.92578 0.81017 1.22052 0.90762 1.03778 1.03425 1.19297 1.02647 0.91921 0.96569 1.21376 0.97976 0.99345 0.95826 1.21387 0.99741 0.91950 1.00921 1.21620 0.97556 0.99429 0.94308 1.21496 0.97726 0.97647 0.96751 1.21083 0.99458 0.91584 0.99568 1.21175 0.79891 0.82552 0.84524 1.90737 1.60027 1.65726 1.18554 0.90470 0.90798 0.88544 0.95264 0.98677 0.92300 0.83540 0.83286 0.69835 0.89579 0.92688 0.86703 0.86149 0.84259 0.83255 0.82898 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.11 10.24 127.77 1.31 3.42 16 2 N -0.60 -26.60 2.86 -851.18 -2.43 -29.03 16 3 C 0.26 14.55 5.16 85.63 0.44 14.99 16 4 C -0.54 -32.31 9.39 25.60 0.24 -32.07 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.49 5.46 84.66 0.46 0.95 16 7 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 8 Si 0.97 45.96 29.54 68.60 2.03 47.99 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 C 0.48 21.37 7.74 87.66 0.68 22.05 16 13 O -0.59 -32.32 16.01 -3.03 -0.05 -32.37 16 14 C 0.11 3.34 4.73 85.63 0.41 3.75 16 15 N -0.56 -18.18 2.09 -777.21 -1.63 -19.80 16 16 C 0.71 22.00 8.62 179.44 1.55 23.55 16 17 O -0.57 -21.09 17.48 -3.83 -0.07 -21.16 16 18 N -0.70 -15.07 5.29 -443.23 -2.34 -17.42 16 19 C 0.18 4.00 1.17 2.24 0.00 4.00 16 20 C -0.14 -2.90 8.97 71.98 0.65 -2.25 16 21 C -0.10 -1.89 4.88 -19.86 -0.10 -1.99 16 22 C -0.13 -2.49 9.18 22.27 0.20 -2.29 16 23 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 24 C -0.11 -1.22 10.05 22.27 0.22 -1.00 16 25 C -0.12 -1.22 10.05 22.27 0.22 -1.00 16 26 C -0.10 -1.28 9.35 22.27 0.21 -1.07 16 27 C 0.53 16.35 6.53 87.94 0.57 16.92 16 28 O -0.48 -16.75 15.67 -2.89 -0.05 -16.79 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 31 H 0.10 2.09 6.44 -2.39 -0.02 2.07 16 32 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 33 H 0.00 -0.32 7.42 -2.39 -0.02 -0.34 16 34 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.15 3.76 7.26 -2.38 -0.02 3.74 16 36 H 0.15 3.81 7.83 -2.39 -0.02 3.80 16 37 H 0.45 6.56 8.10 -92.71 -0.75 5.80 16 38 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.12 2.84 5.77 -2.91 -0.02 2.83 16 42 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 44 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 45 H 0.14 1.18 6.95 -2.91 -0.02 1.16 16 Total: -1.00 -87.48 383.88 3.33 -84.15 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.28 Total: 15.05 kcal Atomic # 6 Polarization: 39.09 SS G_CDS: 7.29 Total: 46.39 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -6.12 Total: -123.26 kcal Atomic # 8 Polarization: -70.16 SS G_CDS: -0.16 Total: -70.32 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -87.48 3.33 -84.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023104175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.101 kcal (2) G-P(sol) polarization free energy of solvation -87.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds