Wall clock time and date at job start Wed Apr 1 2020 02:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 119.62022 * 2 1 4 4 C 1.38630 * 119.16347 * 179.97438 * 3 2 1 5 5 C 1.38675 * 118.41860 * 0.25530 * 4 3 2 6 6 C 1.50699 * 120.41772 * 179.74920 * 5 4 3 7 7 C 1.50705 * 109.47057 * 89.99771 * 6 5 4 8 8 O 1.20831 * 119.99795 * 0.02562 * 7 6 5 9 9 O 1.34228 * 119.99744 * 179.97438 * 7 6 5 10 10 C 1.45201 * 116.99749 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47207 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00146 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00112 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99986 * 179.97438 * 13 11 10 15 15 C 1.50708 * 109.46713 * 90.00574 * 14 13 11 16 16 H 1.07993 * 120.00248 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99558 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99355 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00356 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47079 * 89.99669 * 19 17 15 21 21 H 1.48497 * 109.47238 * 209.99956 * 19 17 15 22 22 H 1.48500 * 109.47185 * 330.00297 * 19 17 15 23 23 C 1.46496 * 119.99932 * 0.02562 * 13 11 10 24 24 C 1.53002 * 109.47510 * 89.99706 * 23 13 11 25 25 C 1.47201 * 109.47228 * 179.97438 * 24 23 13 26 26 N 9.50869 * 107.63442 * 295.77648 * 4 1 2 27 27 C 1.38181 * 119.15910 * 359.47628 * 5 4 3 28 28 N 1.31857 * 119.61823 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46662 * 89.99795 * 1 2 3 30 30 H 1.08999 * 109.47158 * 209.99996 * 1 2 3 31 31 H 1.08991 * 109.47069 * 330.00334 * 1 2 3 32 32 H 1.07997 * 120.41892 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.78834 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.46977 * 209.99446 * 6 5 4 35 35 H 1.08994 * 109.47024 * 329.99906 * 6 5 4 36 36 H 1.09004 * 109.47083 * 300.00215 * 10 9 7 37 37 H 1.09003 * 109.47204 * 59.99852 * 10 9 7 38 38 H 1.08999 * 109.47308 * 210.00283 * 14 13 11 39 39 H 1.08998 * 109.47585 * 330.00758 * 14 13 11 40 40 H 0.96994 * 119.99268 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46873 * 209.99418 * 23 13 11 42 42 H 1.09002 * 109.47167 * 329.99236 * 23 13 11 43 43 H 1.08997 * 109.46433 * 299.99843 * 24 23 13 44 44 H 1.08992 * 109.47302 * 59.99699 * 24 23 13 45 45 H 1.08008 * 119.61503 * 180.25015 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2267 -0.0343 -0.0044 6 6 5.7323 -0.0989 -0.0097 7 6 6.2390 -0.1234 1.4094 8 8 5.4576 -0.0922 2.3305 9 8 7.5583 -0.1810 1.6500 10 6 7.9744 -0.2022 3.0409 11 6 9.4781 -0.2680 3.1145 12 8 10.1346 -0.2940 2.0950 13 7 10.0935 -0.2969 4.3132 14 6 11.5553 -0.3614 4.3847 15 6 12.1191 1.0360 4.4115 16 1 11.4549 1.8869 4.3790 17 6 13.4828 1.2280 4.4786 18 7 13.9748 2.4475 4.5015 19 14 14.6316 -0.2438 4.5356 20 1 15.0048 -0.6343 3.1522 21 1 15.8558 0.1129 5.2966 22 1 13.9474 -1.3803 5.2030 23 6 9.3006 -0.2649 5.5446 24 6 8.9621 -1.6949 5.9706 25 6 8.1659 -1.6628 7.2083 26 7 7.5542 -1.6423 8.1594 27 6 3.4766 -1.1948 0.0014 28 7 2.1587 -1.1463 0.0005 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5137 32 1 1.6508 2.1373 0.0004 33 1 4.1366 2.1139 0.0001 34 1 6.0553 -1.0025 -0.5265 35 1 6.1316 0.7758 -0.5230 36 1 7.6251 0.7026 3.5384 37 1 7.5482 -1.0757 3.5344 38 1 11.8518 -0.8902 5.2905 39 1 11.9388 -0.8912 3.5127 40 1 14.9341 2.5825 4.5491 41 1 9.8736 0.2230 6.3331 42 1 8.3788 0.2897 5.3690 43 1 8.3891 -2.1828 5.1821 44 1 9.8837 -2.2495 6.1463 45 1 3.9754 -2.1528 0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047840685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:55 Heat of formation + Delta-G solvation = -54.380054 kcal Electronic energy + Delta-G solvation = -28690.103449 eV Core-core repulsion = 24480.376957 eV Total energy + Delta-G solvation = -4209.726492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.04541 -40.29991 -39.29301 -37.09929 -36.56747 -35.43826 -34.48841 -32.90420 -32.61900 -31.14405 -30.72748 -29.48000 -27.44411 -26.32113 -24.18680 -23.91392 -22.77584 -22.11082 -20.88515 -18.93824 -18.02210 -17.88286 -17.22209 -16.99440 -16.87752 -16.60731 -16.30837 -16.23798 -15.55278 -15.24770 -14.90098 -14.75533 -14.65327 -14.14332 -13.85040 -13.63868 -13.51505 -13.36300 -13.05748 -12.85108 -12.69486 -12.61246 -12.57368 -12.51795 -12.38967 -12.30811 -11.94913 -11.89818 -11.67952 -11.18455 -11.08914 -10.77419 -10.74951 -10.62714 -10.28531 -10.11168 -9.77665 -9.67026 -9.31118 -9.14051 -8.68124 -8.07549 -6.17553 -4.18074 0.68640 0.97361 2.00615 2.30424 2.65625 2.75872 2.98696 3.22417 3.27455 3.30400 3.39281 3.56268 3.92867 4.02740 4.24305 4.30830 4.35826 4.54417 4.60973 4.63275 4.68940 4.85145 4.90410 4.92361 5.02871 5.07815 5.10631 5.15657 5.19298 5.22018 5.25004 5.32995 5.42295 5.63488 5.64917 5.78498 5.88675 5.91538 6.18394 6.37827 6.47924 6.75653 7.02689 7.47003 7.49176 7.54712 7.67256 7.87007 8.33458 8.61761 8.85507 9.40998 10.95509 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.002228 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.261246 B =12566.424509 C =13889.450714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.128 3.872 3 C -0.171 4.171 4 C -0.054 4.054 5 C -0.135 4.135 6 C -0.067 4.067 7 C 0.461 3.539 8 O -0.503 6.503 9 O -0.328 6.328 10 C 0.047 3.953 11 C 0.512 3.488 12 O -0.508 6.508 13 N -0.587 5.587 14 C 0.216 3.784 15 C -0.535 4.535 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.893 5.893 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.265 1.265 23 C 0.112 3.888 24 C -0.052 4.052 25 C 0.215 3.785 26 N -0.438 5.438 27 C 0.123 3.877 28 N -0.485 5.485 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.036 0.964 39 H 0.042 0.958 40 H 0.266 0.734 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.281 -6.113 -8.795 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.010 4.010 3 C -0.191 4.191 4 C -0.079 4.079 5 C -0.137 4.137 6 C -0.106 4.106 7 C 0.304 3.696 8 O -0.391 6.391 9 O -0.243 6.243 10 C -0.030 4.030 11 C 0.297 3.703 12 O -0.382 6.382 13 N -0.320 5.320 14 C 0.097 3.903 15 C -0.573 4.573 16 H 0.094 0.906 17 C -0.129 4.129 18 N -0.531 5.531 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.014 4.014 24 C -0.093 4.093 25 C -0.103 4.103 26 N -0.115 5.115 27 C -0.034 4.034 28 N -0.194 5.194 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.136 0.864 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.331 -6.754 -7.625 24.544 hybrid contribution 1.511 0.271 -0.019 1.535 sum -20.820 -6.483 -7.644 23.107 Atomic orbital electron populations 1.20726 0.88791 1.03601 1.03079 1.21353 0.97129 0.88432 0.94068 1.21934 0.94667 0.99389 1.03123 1.21494 0.94549 0.97765 0.94141 1.20276 0.94752 0.94911 1.03800 1.20190 0.91422 1.07612 0.91333 1.23608 0.80615 0.72798 0.92601 1.90706 1.56975 1.45075 1.46354 1.86562 1.25032 1.83321 1.29344 1.22949 0.94872 1.04535 0.80643 1.19746 0.87893 0.78301 0.84408 1.90744 1.66221 1.47633 1.33605 1.47808 1.08736 1.72146 1.03331 1.19793 0.73965 0.98776 0.97808 1.21281 0.92702 0.91427 1.51918 0.90583 1.24862 0.97986 0.95763 0.94334 1.69890 1.13093 1.20371 1.49780 0.86863 0.80884 0.83135 0.78856 1.19830 1.21066 1.18949 1.21432 0.97081 0.93465 0.89433 1.19878 0.99241 1.01397 0.88827 1.28767 0.93589 0.93446 0.94499 1.81015 1.10359 1.08216 1.11922 1.22607 0.89285 0.97799 0.93732 1.67547 1.09626 1.29379 1.12870 0.90346 0.90400 0.90648 0.84630 0.84598 0.86024 0.86118 0.88282 0.88592 0.94572 0.94023 0.92430 0.87928 0.90292 0.87586 0.86395 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 10.17 36.01 0.37 -0.28 16 2 C 0.13 1.18 6.78 -82.59 -0.56 0.62 16 3 C -0.17 -1.39 9.74 -39.44 -0.38 -1.78 16 4 C -0.05 -0.46 9.86 -39.27 -0.39 -0.84 16 5 C -0.14 -1.22 4.39 -104.48 -0.46 -1.68 16 6 C -0.07 -0.53 5.97 -29.03 -0.17 -0.71 16 7 C 0.46 5.41 7.95 36.01 0.29 5.69 16 8 O -0.50 -7.07 15.78 -18.75 -0.30 -7.37 16 9 O -0.33 -4.53 9.76 -45.90 -0.45 -4.97 16 10 C 0.05 0.63 4.50 36.00 0.16 0.79 16 11 C 0.51 8.98 7.75 -10.99 -0.09 8.89 16 12 O -0.51 -11.28 16.08 -14.11 -0.23 -11.51 16 13 N -0.59 -9.96 2.46 -175.06 -0.43 -10.39 16 14 C 0.22 4.57 4.23 -5.19 -0.02 4.55 16 15 C -0.53 -14.08 9.94 -34.43 -0.34 -14.42 16 16 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 19 Si 0.88 20.09 27.47 -169.99 -4.67 15.42 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 23 C 0.11 1.38 5.17 -4.04 -0.02 1.35 16 24 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 25 C 0.22 2.49 15.42 -20.92 -0.32 2.17 16 26 N -0.44 -6.33 18.50 41.97 0.78 -5.55 16 27 C 0.12 1.20 10.86 -17.55 -0.19 1.01 16 28 N -0.49 -5.30 10.27 -9.47 -0.10 -5.40 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.12 0.74 8.09 -51.93 -0.42 0.32 16 36 H 0.10 1.22 7.39 -51.93 -0.38 0.84 16 37 H 0.10 1.02 7.18 -51.93 -0.37 0.64 16 38 H 0.04 0.70 7.13 -51.93 -0.37 0.33 16 39 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 42 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 43 H 0.11 0.79 7.22 -51.93 -0.38 0.41 16 44 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.16 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -37.13 398.78 -7.01 -44.15 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.00 Total: -1.51 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -2.41 Total: 6.62 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 1.02 Total: -46.84 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.97 Total: -23.85 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.13 -7.01 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047840685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.235 kcal (2) G-P(sol) polarization free energy of solvation -37.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds