Wall clock time and date at job start Wed Apr 1 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 119.62022 * 2 1 4 4 C 1.38630 * 119.16347 * 179.97438 * 3 2 1 5 5 C 1.38675 * 118.41860 * 0.25530 * 4 3 2 6 6 C 1.50699 * 120.41772 * 179.74920 * 5 4 3 7 7 C 1.50705 * 109.47057 * 89.99771 * 6 5 4 8 8 O 1.20831 * 119.99795 * 0.02562 * 7 6 5 9 9 O 1.34228 * 119.99744 * 179.97438 * 7 6 5 10 10 C 1.45201 * 116.99749 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47207 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00146 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00112 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99986 * 179.97438 * 13 11 10 15 15 C 1.50708 * 109.46713 * 90.00574 * 14 13 11 16 16 H 1.07993 * 120.00248 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99558 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99355 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00356 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47079 * 89.99669 * 19 17 15 21 21 H 1.48497 * 109.47238 * 209.99956 * 19 17 15 22 22 H 1.48500 * 109.47185 * 330.00297 * 19 17 15 23 23 C 1.46496 * 119.99932 * 0.02562 * 13 11 10 24 24 C 1.53002 * 109.47510 * 89.99706 * 23 13 11 25 25 C 1.47201 * 109.47228 * 179.97438 * 24 23 13 26 26 N 9.50869 * 107.63442 * 295.77648 * 4 1 2 27 27 C 1.38181 * 119.15910 * 359.47628 * 5 4 3 28 28 N 1.31857 * 119.61823 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46662 * 89.99795 * 1 2 3 30 30 H 1.08999 * 109.47158 * 209.99996 * 1 2 3 31 31 H 1.08991 * 109.47069 * 330.00334 * 1 2 3 32 32 H 1.07997 * 120.41892 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.78834 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.46977 * 209.99446 * 6 5 4 35 35 H 1.08994 * 109.47024 * 329.99906 * 6 5 4 36 36 H 1.09004 * 109.47083 * 300.00215 * 10 9 7 37 37 H 1.09003 * 109.47204 * 59.99852 * 10 9 7 38 38 H 1.08999 * 109.47308 * 210.00283 * 14 13 11 39 39 H 1.08998 * 109.47585 * 330.00758 * 14 13 11 40 40 H 0.96994 * 119.99268 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46873 * 209.99418 * 23 13 11 42 42 H 1.09002 * 109.47167 * 329.99236 * 23 13 11 43 43 H 1.08997 * 109.46433 * 299.99843 * 24 23 13 44 44 H 1.08992 * 109.47302 * 59.99699 * 24 23 13 45 45 H 1.08008 * 119.61503 * 180.25015 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2267 -0.0343 -0.0044 6 6 5.7323 -0.0989 -0.0097 7 6 6.2390 -0.1234 1.4094 8 8 5.4576 -0.0922 2.3305 9 8 7.5583 -0.1810 1.6500 10 6 7.9744 -0.2022 3.0409 11 6 9.4781 -0.2680 3.1145 12 8 10.1346 -0.2940 2.0950 13 7 10.0935 -0.2969 4.3132 14 6 11.5553 -0.3614 4.3847 15 6 12.1191 1.0360 4.4115 16 1 11.4549 1.8869 4.3790 17 6 13.4828 1.2280 4.4786 18 7 13.9748 2.4475 4.5015 19 14 14.6316 -0.2438 4.5356 20 1 15.0048 -0.6343 3.1522 21 1 15.8558 0.1129 5.2966 22 1 13.9474 -1.3803 5.2030 23 6 9.3006 -0.2649 5.5446 24 6 8.9621 -1.6949 5.9706 25 6 8.1659 -1.6628 7.2083 26 7 7.5542 -1.6423 8.1594 27 6 3.4766 -1.1948 0.0014 28 7 2.1587 -1.1463 0.0005 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5137 32 1 1.6508 2.1373 0.0004 33 1 4.1366 2.1139 0.0001 34 1 6.0553 -1.0025 -0.5265 35 1 6.1316 0.7758 -0.5230 36 1 7.6251 0.7026 3.5384 37 1 7.5482 -1.0757 3.5344 38 1 11.8518 -0.8902 5.2905 39 1 11.9388 -0.8912 3.5127 40 1 14.9341 2.5825 4.5491 41 1 9.8736 0.2230 6.3331 42 1 8.3788 0.2897 5.3690 43 1 8.3891 -2.1828 5.1821 44 1 9.8837 -2.2495 6.1463 45 1 3.9754 -2.1528 0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047840685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:54 Heat of formation + Delta-G solvation = -77.618127 kcal Electronic energy + Delta-G solvation = -28691.111128 eV Core-core repulsion = 24480.376957 eV Total energy + Delta-G solvation = -4210.734171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91650 -41.14652 -40.52570 -38.15120 -37.58811 -36.77359 -35.14903 -34.81987 -33.24229 -32.43845 -31.50027 -30.66064 -28.81975 -27.08350 -25.30924 -24.59720 -24.25134 -23.01528 -21.70946 -20.26680 -19.21618 -18.97129 -18.56062 -18.03364 -17.93881 -17.49481 -17.42209 -17.05918 -16.66846 -16.19293 -15.96229 -15.83748 -15.68079 -15.30213 -14.92166 -14.72908 -14.44176 -14.23339 -14.10274 -13.92425 -13.81758 -13.68722 -13.62377 -13.33690 -13.23915 -13.18545 -13.05075 -12.98395 -12.71847 -12.51038 -12.39310 -12.09483 -11.96105 -11.74891 -11.71027 -11.67817 -10.79467 -10.75862 -10.73398 -10.43137 -9.77587 -9.56666 -8.26701 -6.31947 0.03641 0.33539 1.12175 1.30779 1.42180 1.45379 1.52695 1.56760 1.80058 1.85903 2.32235 2.38162 2.82272 3.04508 3.11310 3.34410 3.53262 3.60794 3.78471 3.80961 3.96806 3.98458 4.00347 4.02203 4.07971 4.13345 4.37648 4.52464 4.54259 4.67320 4.71839 4.77550 4.79615 4.84970 4.86117 4.96982 5.06291 5.14730 5.19635 5.28162 5.30617 5.50506 5.55921 5.78074 6.27437 6.48096 6.60069 6.66395 6.71571 7.02465 7.20176 7.34736 8.89981 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.002228 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.261246 B =12566.424509 C =13889.450714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.109 3.891 3 C -0.175 4.175 4 C -0.065 4.065 5 C -0.142 4.142 6 C -0.062 4.062 7 C 0.465 3.535 8 O -0.529 6.529 9 O -0.345 6.345 10 C 0.053 3.947 11 C 0.508 3.492 12 O -0.564 6.564 13 N -0.587 5.587 14 C 0.222 3.778 15 C -0.535 4.535 16 H 0.030 0.970 17 C 0.008 3.992 18 N -0.948 5.948 19 Si 0.944 3.056 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.224 1.224 23 C 0.106 3.894 24 C -0.040 4.040 25 C 0.244 3.756 26 N -0.490 5.490 27 C 0.107 3.893 28 N -0.515 5.515 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.067 0.933 39 H 0.030 0.970 40 H 0.266 0.734 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.331 -7.893 -8.851 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.028 4.028 3 C -0.194 4.194 4 C -0.090 4.090 5 C -0.144 4.144 6 C -0.099 4.099 7 C 0.310 3.690 8 O -0.418 6.418 9 O -0.260 6.260 10 C -0.023 4.023 11 C 0.296 3.704 12 O -0.442 6.442 13 N -0.319 5.319 14 C 0.101 3.899 15 C -0.574 4.574 16 H 0.048 0.952 17 C -0.190 4.190 18 N -0.589 5.589 19 Si 0.767 3.233 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.147 1.147 23 C -0.018 4.018 24 C -0.081 4.081 25 C -0.073 4.073 26 N -0.167 5.167 27 C -0.050 4.050 28 N -0.225 5.225 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.178 0.822 33 H 0.171 0.829 34 H 0.164 0.836 35 H 0.159 0.841 36 H 0.128 0.872 37 H 0.148 0.852 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -23.439 -8.553 -7.643 26.096 hybrid contribution 1.748 0.947 -0.042 1.989 sum -21.691 -7.606 -7.685 24.237 Atomic orbital electron populations 1.20793 0.87093 1.04117 1.03973 1.21874 0.98520 0.88513 0.93855 1.22251 0.94819 1.00087 1.02288 1.21847 0.95076 0.98386 0.93709 1.20390 0.95211 0.94936 1.03905 1.20327 0.90683 1.09730 0.89172 1.24257 0.79499 0.71539 0.93738 1.90695 1.57209 1.46429 1.47448 1.86572 1.26382 1.83651 1.29438 1.22901 0.91523 1.06613 0.81309 1.20452 0.89638 0.76742 0.83589 1.90715 1.67811 1.50185 1.35455 1.47735 1.07579 1.71608 1.04955 1.19512 0.76531 0.95401 0.98471 1.21602 0.92339 0.92877 1.50582 0.95162 1.25875 1.00126 0.98903 0.94109 1.70065 1.13471 1.23233 1.52098 0.85765 0.78418 0.80268 0.78818 1.20338 1.21154 1.14658 1.21634 0.97079 0.95863 0.87222 1.19880 1.00207 0.99496 0.88478 1.28973 0.92411 0.91895 0.94049 1.81059 1.12271 1.09788 1.13631 1.22912 0.89318 0.98801 0.94003 1.67559 1.10348 1.30534 1.14022 0.89188 0.91153 0.88830 0.82200 0.82906 0.83641 0.84134 0.87173 0.85175 0.91474 0.95168 0.92530 0.88851 0.88348 0.84640 0.84617 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 10.17 71.24 0.72 -0.42 16 2 C 0.11 1.91 6.78 42.55 0.29 2.20 16 3 C -0.18 -2.57 9.74 22.36 0.22 -2.35 16 4 C -0.06 -0.99 9.86 22.47 0.22 -0.77 16 5 C -0.14 -2.36 4.39 -19.77 -0.09 -2.44 16 6 C -0.06 -0.85 5.97 29.10 0.17 -0.67 16 7 C 0.47 10.03 7.95 71.24 0.57 10.59 16 8 O -0.53 -13.89 15.78 21.95 0.35 -13.55 16 9 O -0.34 -8.95 9.76 -45.04 -0.44 -9.39 16 10 C 0.05 1.30 4.50 71.23 0.32 1.62 16 11 C 0.51 17.26 7.75 87.66 0.68 17.94 16 12 O -0.56 -25.09 16.08 15.75 0.25 -24.84 16 13 N -0.59 -18.92 2.46 -826.14 -2.03 -20.95 16 14 C 0.22 9.08 4.23 85.64 0.36 9.44 16 15 C -0.54 -28.64 9.94 25.60 0.25 -28.38 16 16 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 17 C 0.01 0.42 5.47 84.66 0.46 0.88 16 18 N -0.95 -57.65 13.96 21.45 0.30 -57.35 16 19 Si 0.94 40.89 27.47 68.60 1.88 42.78 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.22 -8.16 6.54 99.48 0.65 -7.51 16 23 C 0.11 2.34 5.17 86.38 0.45 2.79 16 24 C -0.04 -0.59 6.03 28.79 0.17 -0.42 16 25 C 0.24 4.97 15.42 89.50 1.38 6.35 16 26 N -0.49 -13.32 18.50 19.95 0.37 -12.95 16 27 C 0.11 1.99 10.86 84.67 0.92 2.91 16 28 N -0.51 -10.99 10.27 -183.89 -1.89 -12.88 16 29 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.67 8.08 -2.39 -0.02 0.65 16 32 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.15 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.14 1.39 8.09 -2.39 -0.02 1.37 16 36 H 0.11 2.47 7.39 -2.38 -0.02 2.45 16 37 H 0.13 2.27 7.18 -2.39 -0.02 2.25 16 38 H 0.07 2.36 7.13 -2.39 -0.02 2.34 16 39 H 0.03 1.33 6.85 -2.39 -0.02 1.31 16 40 H 0.27 15.15 8.31 -92.71 -0.77 14.37 16 41 H 0.09 2.27 8.07 -2.38 -0.02 2.25 16 42 H 0.10 1.80 6.44 -2.39 -0.02 1.79 16 43 H 0.14 1.33 7.22 -2.39 -0.02 1.31 16 44 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -85.40 398.78 6.86 -78.54 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.96 Total: 11.32 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 7.10 Total: 19.27 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -3.25 Total: -104.12 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: 0.16 Total: -47.78 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.88 Total: 42.78 kcal Total: -85.40 6.86 -78.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047840685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.922 kcal (2) G-P(sol) polarization free energy of solvation -85.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds