Wall clock time and date at job start Wed Apr 1 2020 03:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.53388 * 2 1 4 4 N 1.47312 * 110.59892 * 237.17367 * 2 1 3 5 5 C 1.34873 * 106.43602 * 241.51938 * 4 2 1 6 6 O 1.21539 * 123.72243 * 179.97438 * 5 4 2 7 7 N 1.33785 * 112.50284 * 359.86381 * 5 4 2 8 8 C 1.46498 * 124.18215 * 180.12088 * 7 5 4 9 9 C 1.50703 * 109.47387 * 269.96675 * 8 7 5 10 10 O 1.21290 * 119.99603 * 5.15054 * 9 8 7 11 11 N 1.34770 * 120.00020 * 185.15650 * 9 8 7 12 12 C 1.46500 * 120.00087 * 185.21211 * 11 9 8 13 13 C 1.50702 * 109.46698 * 89.99851 * 12 11 9 14 14 H 1.07997 * 120.00421 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00270 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99876 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47344 * 90.00275 * 17 15 13 19 19 H 1.48505 * 109.47143 * 210.00179 * 17 15 13 20 20 H 1.48497 * 109.47138 * 329.99703 * 17 15 13 21 21 C 1.39930 * 120.00202 * 5.21210 * 11 9 8 22 22 C 1.38872 * 120.07107 * 292.47441 * 21 11 9 23 23 C 1.38108 * 119.92782 * 179.76414 * 22 21 11 24 24 C 1.38288 * 120.07133 * 0.48460 * 23 22 21 25 25 C 1.38284 * 120.13985 * 359.76346 * 24 23 22 26 26 C 1.38107 * 120.06840 * 0.02562 * 25 24 23 27 27 C 1.34768 * 111.64537 * 0.08880 * 7 5 4 28 28 O 1.21236 * 127.15966 * 180.02562 * 27 7 5 29 29 H 1.09004 * 109.47382 * 59.30119 * 1 2 3 30 30 H 1.09002 * 109.47283 * 179.29881 * 1 2 3 31 31 H 1.09002 * 109.47232 * 299.29310 * 1 2 3 32 32 H 1.09004 * 109.47421 * 60.70407 * 3 2 1 33 33 H 1.09007 * 109.47127 * 180.69826 * 3 2 1 34 34 H 1.08990 * 109.47557 * 300.70154 * 3 2 1 35 35 H 0.97000 * 126.69445 * 61.44322 * 4 2 1 36 36 H 1.09003 * 109.46565 * 29.95917 * 8 7 5 37 37 H 1.08994 * 109.47655 * 149.96191 * 8 7 5 38 38 H 1.08997 * 109.47206 * 209.99842 * 12 11 9 39 39 H 1.08999 * 109.47108 * 330.00260 * 12 11 9 40 40 H 0.96996 * 120.00258 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.03313 * 359.96919 * 22 21 11 42 42 H 1.07996 * 119.96595 * 180.24809 * 23 22 21 43 43 H 1.07996 * 119.93147 * 179.74973 * 24 23 22 44 44 H 1.08000 * 119.96322 * 179.97438 * 25 24 23 45 45 H 1.08005 * 120.03050 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0666 1.4328 0.0000 4 7 2.0483 -0.7475 -1.1587 5 6 2.7599 -1.7790 -0.6602 6 8 3.3291 -2.6020 -1.3500 7 7 2.7716 -1.7939 0.6776 8 6 3.4687 -2.7992 1.4835 9 6 2.5395 -3.9526 1.7617 10 8 1.4389 -3.9810 1.2528 11 7 2.9313 -4.9523 2.5761 12 6 2.0760 -6.1279 2.7568 13 6 2.4282 -7.1686 1.7253 14 1 3.2111 -6.9740 1.0073 15 6 1.7515 -8.3697 1.6989 16 7 0.7984 -8.6069 2.5736 17 14 2.1885 -9.6600 0.4208 18 1 3.2463 -10.5520 0.9595 19 1 0.9823 -10.4629 0.0955 20 1 2.6839 -8.9908 -0.8088 21 6 4.1552 -4.8676 3.2491 22 6 5.3461 -4.9143 2.5362 23 6 6.5523 -4.8254 3.2029 24 6 6.5753 -4.7002 4.5799 25 6 5.3913 -4.6586 5.2932 26 6 4.1818 -4.7426 4.6319 27 6 2.0633 -0.7693 1.1923 28 8 1.8894 -0.5154 2.3649 29 1 -0.3634 0.5247 -0.8837 30 1 -0.3634 -1.0276 -0.0126 31 1 -0.3634 0.5028 0.8963 32 1 1.7232 1.9495 0.8962 33 1 3.1564 1.4126 -0.0125 34 1 1.7028 1.9571 -0.8835 35 1 1.9041 -0.5385 -2.0949 36 1 4.3418 -3.1593 0.9393 37 1 3.7863 -2.3531 2.4258 38 1 2.2293 -6.5389 3.7546 39 1 1.0316 -5.8388 2.6394 40 1 0.3222 -9.4517 2.5548 41 1 5.3288 -5.0166 1.4611 42 1 7.4786 -4.8576 2.6487 43 1 7.5198 -4.6350 5.0994 44 1 5.4126 -4.5612 6.3686 45 1 3.2574 -4.7105 5.1897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057949896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:37 Heat of formation + Delta-G solvation = -37.651641 kcal Electronic energy + Delta-G solvation = -31154.415395 eV Core-core repulsion = 26945.414301 eV Total energy + Delta-G solvation = -4209.001094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.56608 -39.92520 -38.59769 -38.17521 -36.61252 -35.32672 -34.76459 -32.72514 -31.60690 -30.76015 -29.51228 -29.02988 -27.82618 -26.79625 -24.30453 -23.26875 -22.62111 -22.15985 -21.71662 -20.53633 -19.17123 -18.02092 -17.60476 -16.75418 -16.42021 -16.21928 -15.94589 -15.81267 -15.76369 -15.08819 -14.99141 -14.58759 -14.28922 -14.19148 -14.14792 -13.85843 -13.53839 -13.17551 -13.04368 -12.93309 -12.58450 -12.54086 -12.50302 -12.34100 -11.91651 -11.87070 -11.51386 -11.23603 -11.03368 -10.87383 -10.80025 -10.63858 -10.28328 -10.17913 -10.14800 -9.76325 -9.61792 -9.29786 -8.72229 -8.58559 -8.44903 -7.74561 -6.07090 -4.11690 1.51438 1.60949 1.61193 2.07844 2.96421 3.04456 3.10969 3.31039 3.37009 3.42909 3.68848 3.82560 3.99014 4.28581 4.44042 4.49605 4.80412 4.91802 5.14264 5.15088 5.17127 5.21596 5.23837 5.28188 5.30519 5.34041 5.36851 5.43567 5.61814 5.65387 5.67550 5.79283 5.85563 5.99960 6.23477 6.57011 6.70394 6.71576 6.76072 6.91176 7.01962 7.16225 7.30437 7.33092 7.41594 7.88273 8.11042 8.15744 8.22756 8.72069 8.92844 9.52941 11.01329 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.004249 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.781316 B = 6588.843133 C = 8217.301793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.120 3.880 3 C -0.145 4.145 4 N -0.723 5.723 5 C 0.709 3.291 6 O -0.534 6.534 7 N -0.558 5.558 8 C 0.098 3.902 9 C 0.505 3.495 10 O -0.518 6.518 11 N -0.555 5.555 12 C 0.248 3.752 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.155 3.845 22 C -0.128 4.128 23 C -0.108 4.108 24 C -0.132 4.132 25 C -0.108 4.108 26 C -0.121 4.121 27 C 0.534 3.466 28 O -0.463 6.463 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.438 0.562 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.038 0.962 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 19.949 -0.866 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.029 3.971 3 C -0.203 4.203 4 N -0.388 5.388 5 C 0.410 3.590 6 O -0.406 6.406 7 N -0.303 5.303 8 C -0.027 4.027 9 C 0.291 3.709 10 O -0.393 6.393 11 N -0.283 5.283 12 C 0.131 3.869 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.063 3.937 22 C -0.148 4.148 23 C -0.127 4.127 24 C -0.151 4.151 25 C -0.127 4.127 26 C -0.140 4.140 27 C 0.321 3.679 28 O -0.332 6.332 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.283 0.717 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.722 19.388 -0.754 20.534 hybrid contribution 0.131 -1.052 -1.055 1.496 sum 6.853 18.335 -1.809 19.657 Atomic orbital electron populations 1.22016 0.90077 1.04537 1.04043 1.21432 0.97415 0.93946 0.84260 1.21996 1.01987 0.92010 1.04321 1.45663 1.55296 1.29065 1.08809 1.15840 0.79720 0.81968 0.81510 1.91028 1.48244 1.40572 1.60774 1.45863 1.49364 1.27224 1.07835 1.21668 0.95532 0.88264 0.97222 1.20359 0.87902 0.83263 0.79394 1.90695 1.21363 1.77940 1.49308 1.45891 1.18562 1.20545 1.43345 1.19480 0.90273 0.79629 0.97507 1.21367 1.19742 0.99771 1.15730 0.92272 1.24901 0.94727 0.98210 0.96038 1.69928 1.22955 1.24748 1.35637 0.86477 0.77914 0.81199 0.81800 1.20526 1.21024 1.19747 1.17803 0.85896 0.98677 0.91343 1.21427 0.91753 1.00987 1.00637 1.20982 0.97265 1.00004 0.94461 1.21086 0.97952 1.01801 0.94224 1.20981 0.91988 1.00072 0.99656 1.21312 0.98709 1.00490 0.93524 1.20776 0.76828 0.80342 0.89990 1.90782 1.56207 1.69624 1.16615 0.90331 0.90715 0.89847 0.89767 0.91417 0.90267 0.71746 0.85769 0.86378 0.94441 0.93298 0.92640 0.85660 0.85969 0.86281 0.85965 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.98 37.16 0.33 -1.01 16 2 C 0.12 1.22 1.37 -132.09 -0.18 1.04 16 3 C -0.14 -0.97 8.98 37.16 0.33 -0.63 16 4 N -0.72 -7.94 5.93 -52.85 -0.31 -8.25 16 5 C 0.71 11.32 8.63 -87.71 -0.76 10.56 16 6 O -0.53 -10.42 17.48 5.33 0.09 -10.33 16 7 N -0.56 -8.99 2.10 -121.92 -0.26 -9.25 16 8 C 0.10 1.66 4.69 -5.19 -0.02 1.63 16 9 C 0.51 11.07 7.64 -10.99 -0.08 10.98 16 10 O -0.52 -13.34 15.99 5.55 0.09 -13.25 16 11 N -0.56 -12.28 2.51 -114.74 -0.29 -12.56 16 12 C 0.25 6.63 5.15 -5.19 -0.03 6.61 16 13 C -0.53 -15.27 9.39 -34.44 -0.32 -15.59 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 16 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 17 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.15 2.83 4.43 -83.69 -0.37 2.46 16 22 C -0.13 -2.06 8.45 -39.39 -0.33 -2.39 16 23 C -0.11 -1.41 10.04 -39.61 -0.40 -1.80 16 24 C -0.13 -1.59 10.04 -39.55 -0.40 -1.99 16 25 C -0.11 -1.41 10.04 -39.61 -0.40 -1.81 16 26 C -0.12 -1.94 9.66 -39.39 -0.38 -2.33 16 27 C 0.53 7.76 6.98 -10.55 -0.07 7.69 16 28 O -0.46 -7.61 17.76 5.60 0.10 -7.51 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.44 3.49 8.96 -40.82 -0.37 3.13 16 36 H 0.12 1.95 6.61 -51.93 -0.34 1.60 16 37 H 0.12 1.74 7.73 -51.93 -0.40 1.34 16 38 H 0.04 1.01 7.84 -51.93 -0.41 0.61 16 39 H 0.05 1.45 7.36 -51.93 -0.38 1.07 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.13 2.03 7.55 -52.49 -0.40 1.64 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -37.31 389.10 -8.24 -45.55 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.07 Total: 3.28 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: -3.18 Total: 15.17 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.12 Total: -56.15 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: 0.28 Total: -31.09 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.31 -8.24 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057949896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.897 kcal (2) G-P(sol) polarization free energy of solvation -37.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds