Wall clock time and date at job start Wed Apr 1 2020 03:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.53388 * 2 1 4 4 N 1.47312 * 110.59892 * 237.17367 * 2 1 3 5 5 C 1.34873 * 106.43602 * 241.51938 * 4 2 1 6 6 O 1.21539 * 123.72243 * 179.97438 * 5 4 2 7 7 N 1.33785 * 112.50284 * 359.86381 * 5 4 2 8 8 C 1.46498 * 124.18215 * 180.12088 * 7 5 4 9 9 C 1.50703 * 109.47387 * 269.96675 * 8 7 5 10 10 O 1.21290 * 119.99603 * 5.15054 * 9 8 7 11 11 N 1.34770 * 120.00020 * 185.15650 * 9 8 7 12 12 C 1.46500 * 120.00087 * 185.21211 * 11 9 8 13 13 C 1.50702 * 109.46698 * 89.99851 * 12 11 9 14 14 H 1.07997 * 120.00421 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00270 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99876 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47344 * 90.00275 * 17 15 13 19 19 H 1.48505 * 109.47143 * 210.00179 * 17 15 13 20 20 H 1.48497 * 109.47138 * 329.99703 * 17 15 13 21 21 C 1.39930 * 120.00202 * 5.21210 * 11 9 8 22 22 C 1.38872 * 120.07107 * 292.47441 * 21 11 9 23 23 C 1.38108 * 119.92782 * 179.76414 * 22 21 11 24 24 C 1.38288 * 120.07133 * 0.48460 * 23 22 21 25 25 C 1.38284 * 120.13985 * 359.76346 * 24 23 22 26 26 C 1.38107 * 120.06840 * 0.02562 * 25 24 23 27 27 C 1.34768 * 111.64537 * 0.08880 * 7 5 4 28 28 O 1.21236 * 127.15966 * 180.02562 * 27 7 5 29 29 H 1.09004 * 109.47382 * 59.30119 * 1 2 3 30 30 H 1.09002 * 109.47283 * 179.29881 * 1 2 3 31 31 H 1.09002 * 109.47232 * 299.29310 * 1 2 3 32 32 H 1.09004 * 109.47421 * 60.70407 * 3 2 1 33 33 H 1.09007 * 109.47127 * 180.69826 * 3 2 1 34 34 H 1.08990 * 109.47557 * 300.70154 * 3 2 1 35 35 H 0.97000 * 126.69445 * 61.44322 * 4 2 1 36 36 H 1.09003 * 109.46565 * 29.95917 * 8 7 5 37 37 H 1.08994 * 109.47655 * 149.96191 * 8 7 5 38 38 H 1.08997 * 109.47206 * 209.99842 * 12 11 9 39 39 H 1.08999 * 109.47108 * 330.00260 * 12 11 9 40 40 H 0.96996 * 120.00258 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.03313 * 359.96919 * 22 21 11 42 42 H 1.07996 * 119.96595 * 180.24809 * 23 22 21 43 43 H 1.07996 * 119.93147 * 179.74973 * 24 23 22 44 44 H 1.08000 * 119.96322 * 179.97438 * 25 24 23 45 45 H 1.08005 * 120.03050 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0666 1.4328 0.0000 4 7 2.0483 -0.7475 -1.1587 5 6 2.7599 -1.7790 -0.6602 6 8 3.3291 -2.6020 -1.3500 7 7 2.7716 -1.7939 0.6776 8 6 3.4687 -2.7992 1.4835 9 6 2.5395 -3.9526 1.7617 10 8 1.4389 -3.9810 1.2528 11 7 2.9313 -4.9523 2.5761 12 6 2.0760 -6.1279 2.7568 13 6 2.4282 -7.1686 1.7253 14 1 3.2111 -6.9740 1.0073 15 6 1.7515 -8.3697 1.6989 16 7 0.7984 -8.6069 2.5736 17 14 2.1885 -9.6600 0.4208 18 1 3.2463 -10.5520 0.9595 19 1 0.9823 -10.4629 0.0955 20 1 2.6839 -8.9908 -0.8088 21 6 4.1552 -4.8676 3.2491 22 6 5.3461 -4.9143 2.5362 23 6 6.5523 -4.8254 3.2029 24 6 6.5753 -4.7002 4.5799 25 6 5.3913 -4.6586 5.2932 26 6 4.1818 -4.7426 4.6319 27 6 2.0633 -0.7693 1.1923 28 8 1.8894 -0.5154 2.3649 29 1 -0.3634 0.5247 -0.8837 30 1 -0.3634 -1.0276 -0.0126 31 1 -0.3634 0.5028 0.8963 32 1 1.7232 1.9495 0.8962 33 1 3.1564 1.4126 -0.0125 34 1 1.7028 1.9571 -0.8835 35 1 1.9041 -0.5385 -2.0949 36 1 4.3418 -3.1593 0.9393 37 1 3.7863 -2.3531 2.4258 38 1 2.2293 -6.5389 3.7546 39 1 1.0316 -5.8388 2.6394 40 1 0.3222 -9.4517 2.5548 41 1 5.3288 -5.0166 1.4611 42 1 7.4786 -4.8576 2.6487 43 1 7.5198 -4.6350 5.0994 44 1 5.4126 -4.5612 6.3686 45 1 3.2574 -4.7105 5.1897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057949896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:35 Heat of formation + Delta-G solvation = -63.901214 kcal Electronic energy + Delta-G solvation = -31155.553662 eV Core-core repulsion = 26945.414301 eV Total energy + Delta-G solvation = -4210.139361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.72889 -41.44966 -39.84571 -39.57657 -37.75680 -36.79651 -36.27251 -34.86462 -32.57187 -31.92032 -31.10516 -30.37588 -28.66431 -28.46061 -25.58172 -25.02431 -24.00976 -23.37496 -22.91331 -21.66547 -20.65361 -19.21175 -19.02993 -18.76014 -17.91817 -17.48388 -17.36559 -17.05854 -16.83580 -16.67767 -16.57840 -15.99783 -15.56686 -15.43938 -15.38366 -15.33010 -14.71960 -14.50397 -14.32306 -14.26262 -13.68625 -13.67564 -13.52580 -13.43957 -13.29958 -13.14313 -13.09372 -12.70711 -12.60377 -12.50832 -12.19813 -12.16971 -12.05100 -11.79076 -11.76131 -11.30214 -10.91262 -10.71915 -10.57420 -10.17140 -9.85828 -9.32177 -8.30830 -6.45849 0.30703 0.45007 0.47445 0.88583 1.30142 1.33768 1.39608 1.46569 1.72975 2.04482 2.15046 2.34197 2.76812 2.83121 2.99155 3.33340 3.44304 3.73198 3.74708 3.90171 4.06367 4.10350 4.13138 4.30939 4.36497 4.57778 4.57993 4.61925 4.64427 4.69321 4.73254 4.83499 4.93268 5.02618 5.07358 5.13490 5.18501 5.33343 5.51517 5.60532 5.61514 5.68017 5.72653 5.87679 5.92939 6.03137 6.20092 6.49313 6.60920 6.97907 7.04181 7.25173 8.76942 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.004249 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.781316 B = 6588.843133 C = 8217.301793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.128 3.872 3 C -0.138 4.138 4 N -0.697 5.697 5 C 0.701 3.299 6 O -0.578 6.578 7 N -0.568 5.568 8 C 0.113 3.887 9 C 0.494 3.506 10 O -0.572 6.572 11 N -0.556 5.556 12 C 0.267 3.733 13 C -0.545 4.545 14 H 0.050 0.950 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.968 3.032 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.276 1.276 21 C 0.113 3.887 22 C -0.139 4.139 23 C -0.100 4.100 24 C -0.115 4.115 25 C -0.101 4.101 26 C -0.137 4.137 27 C 0.522 3.478 28 O -0.488 6.488 29 H 0.118 0.882 30 H 0.040 0.960 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.454 0.546 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.025 0.975 39 H 0.004 0.996 40 H 0.269 0.731 41 H 0.114 0.886 42 H 0.157 0.843 43 H 0.163 0.837 44 H 0.155 0.845 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.861 21.604 -1.093 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.038 3.962 3 C -0.195 4.195 4 N -0.364 5.364 5 C 0.401 3.599 6 O -0.454 6.454 7 N -0.313 5.313 8 C -0.012 4.012 9 C 0.282 3.718 10 O -0.452 6.452 11 N -0.283 5.283 12 C 0.147 3.853 13 C -0.584 4.584 14 H 0.068 0.932 15 C -0.187 4.187 16 N -0.564 5.564 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.201 1.201 21 C 0.023 3.977 22 C -0.158 4.158 23 C -0.118 4.118 24 C -0.132 4.132 25 C -0.119 4.119 26 C -0.157 4.157 27 C 0.311 3.689 28 O -0.359 6.359 29 H 0.136 0.864 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.302 0.698 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.043 0.957 39 H 0.022 0.978 40 H 0.078 0.922 41 H 0.132 0.868 42 H 0.174 0.826 43 H 0.181 0.819 44 H 0.172 0.828 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.346 21.105 -0.969 23.102 hybrid contribution -0.647 -1.530 -0.861 1.871 sum 8.699 19.574 -1.829 21.498 Atomic orbital electron populations 1.22075 0.88828 1.03071 1.06464 1.21687 0.98065 0.95085 0.81369 1.22051 1.02012 0.89019 1.06444 1.45602 1.53386 1.27402 1.09982 1.16090 0.79982 0.82508 0.81281 1.90986 1.50413 1.42488 1.61556 1.46061 1.49726 1.27289 1.08180 1.21512 0.94322 0.86849 0.98547 1.21286 0.87952 0.84173 0.78369 1.90642 1.23750 1.79308 1.51454 1.45701 1.19600 1.19229 1.43756 1.18874 0.88937 0.81088 0.96375 1.21575 1.19861 1.00810 1.16124 0.93169 1.25822 0.94406 1.00363 0.98105 1.70041 1.23694 1.25565 1.37105 0.85414 0.78325 0.78410 0.78707 1.18532 1.20049 1.20057 1.18093 0.84817 1.02520 0.92302 1.21431 0.92238 1.01903 1.00253 1.21371 0.97011 0.98122 0.95280 1.21603 0.99199 0.98617 0.93809 1.21357 0.90935 0.98361 1.01296 1.21375 0.99941 1.01683 0.92686 1.21673 0.76095 0.80142 0.91012 1.90755 1.56909 1.70268 1.17961 0.86359 0.94122 0.88964 0.88918 0.91388 0.86778 0.69801 0.84696 0.84347 0.95655 0.97784 0.92162 0.86808 0.82574 0.81921 0.82774 0.86970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.98 71.98 0.65 -1.80 16 2 C 0.13 2.43 1.37 2.98 0.00 2.44 16 3 C -0.14 -1.40 8.98 71.98 0.65 -0.75 16 4 N -0.70 -14.70 5.93 -439.33 -2.61 -17.31 16 5 C 0.70 22.95 8.63 179.33 1.55 24.50 16 6 O -0.58 -23.47 17.48 -3.84 -0.07 -23.54 16 7 N -0.57 -18.99 2.10 -776.90 -1.63 -20.62 16 8 C 0.11 4.02 4.69 85.63 0.40 4.42 16 9 C 0.49 23.39 7.64 87.66 0.67 24.06 16 10 O -0.57 -32.11 15.99 -3.06 -0.05 -32.16 16 11 N -0.56 -26.52 2.51 -635.30 -1.59 -28.11 16 12 C 0.27 15.45 5.15 85.63 0.44 15.89 16 13 C -0.55 -33.30 9.39 25.60 0.24 -33.06 16 14 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 15 C 0.01 0.75 5.46 84.66 0.46 1.21 16 16 N -0.92 -57.56 13.29 21.45 0.28 -57.27 16 17 Si 0.97 46.90 29.54 68.60 2.03 48.93 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 21 C 0.11 4.30 4.43 38.15 0.17 4.47 16 22 C -0.14 -4.45 8.45 22.39 0.19 -4.26 16 23 C -0.10 -2.29 10.04 22.25 0.22 -2.06 16 24 C -0.11 -2.28 10.04 22.29 0.22 -2.05 16 25 C -0.10 -2.39 10.04 22.25 0.22 -2.16 16 26 C -0.14 -4.51 9.66 22.39 0.22 -4.29 16 27 C 0.52 15.40 6.98 87.94 0.61 16.01 16 28 O -0.49 -16.41 17.76 -2.89 -0.05 -16.46 16 29 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.45 6.44 8.96 -92.71 -0.83 5.61 16 36 H 0.14 4.45 6.61 -2.39 -0.02 4.44 16 37 H 0.14 4.26 7.73 -2.39 -0.02 4.24 16 38 H 0.03 1.49 7.84 -2.39 -0.02 1.48 16 39 H 0.00 0.27 7.36 -2.39 -0.02 0.25 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.11 3.83 7.55 -2.91 -0.02 3.81 16 42 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 43 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 44 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 45 H 0.11 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -89.39 389.10 3.43 -85.96 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.19 Total: 18.02 kcal Atomic # 6 Polarization: 35.64 SS G_CDS: 6.92 Total: 42.56 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -5.54 Total: -123.32 kcal Atomic # 8 Polarization: -71.99 SS G_CDS: -0.17 Total: -72.16 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -89.39 3.43 -85.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057949896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.063 kcal (2) G-P(sol) polarization free energy of solvation -89.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds