Wall clock time and date at job start Wed Apr 1 2020 04:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47240 * 2 1 4 4 C 1.52997 * 110.53470 * 302.82944 * 3 2 1 5 5 N 1.47308 * 110.72931 * 65.75130 * 3 2 1 6 6 C 1.34529 * 106.62086 * 118.58884 * 5 3 2 7 7 O 1.21538 * 123.76840 * 179.97438 * 6 5 3 8 8 N 1.33788 * 112.45662 * 359.97438 * 6 5 3 9 9 C 1.46503 * 124.17783 * 180.26991 * 8 6 5 10 10 C 1.50697 * 109.46901 * 269.70283 * 9 8 6 11 11 O 1.21284 * 120.00389 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00007 * 180.02562 * 10 9 8 13 13 C 1.39241 * 120.00338 * 175.70461 * 12 10 9 14 14 C 1.39477 * 119.83473 * 215.01329 * 13 12 10 15 15 C 1.36373 * 120.17038 * 179.72132 * 14 13 12 16 16 C 1.40872 * 119.82545 * 0.54293 * 15 14 13 17 17 C 1.41151 * 120.16519 * 179.74677 * 16 15 14 18 18 H 1.08004 * 120.00123 * 214.76866 * 17 16 15 19 19 C 1.39905 * 119.99814 * 34.76561 * 17 16 15 20 20 N 1.30868 * 120.00192 * 355.56461 * 19 17 16 21 21 Si 1.86806 * 119.99814 * 175.55922 * 19 17 16 22 22 H 1.48507 * 109.46813 * 90.00128 * 21 19 17 23 23 H 1.48495 * 109.46866 * 210.00182 * 21 19 17 24 24 H 1.48500 * 109.47138 * 330.00272 * 21 19 17 25 25 C 1.40870 * 119.67197 * 359.73042 * 16 15 14 26 26 C 1.36375 * 119.83054 * 359.97438 * 25 16 15 27 27 C 1.34763 * 111.64503 * 359.97438 * 8 6 5 28 28 O 1.21239 * 127.16036 * 179.97438 * 27 8 6 29 29 H 1.09001 * 109.46934 * 300.00252 * 1 2 3 30 30 H 1.09002 * 109.46699 * 59.99986 * 1 2 3 31 31 H 1.09001 * 109.47264 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46934 * 239.99748 * 2 1 3 33 33 H 1.08996 * 109.46663 * 120.00469 * 2 1 3 34 34 H 1.08997 * 109.46946 * 297.87037 * 4 3 2 35 35 H 1.09002 * 109.46982 * 57.87070 * 4 3 2 36 36 H 1.09004 * 109.46936 * 177.86989 * 4 3 2 37 37 H 0.97005 * 126.69244 * 298.61518 * 5 3 2 38 38 H 1.08996 * 109.46788 * 29.69760 * 9 8 6 39 39 H 1.09000 * 109.46862 * 149.69764 * 9 8 6 40 40 H 0.97006 * 119.99995 * 355.70142 * 12 10 9 41 41 H 1.08000 * 119.91739 * 359.97438 * 14 13 12 42 42 H 1.07993 * 120.09102 * 180.27129 * 15 14 13 43 43 H 0.96995 * 120.00385 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.08746 * 180.02562 * 25 16 15 45 45 H 1.07995 * 119.91806 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4866 2.2074 -1.2039 5 7 1.6804 2.1227 1.2562 6 6 2.8363 2.4703 1.8501 7 8 2.9002 3.0543 2.9141 8 7 3.9076 2.1015 1.1386 9 6 5.2924 2.3466 1.5491 10 6 5.7494 3.6760 1.0060 11 8 4.9931 4.3519 0.3412 12 7 6.9990 4.1134 1.2583 13 6 7.4514 5.2981 0.6833 14 6 8.7870 5.4173 0.2994 15 6 9.2360 6.5725 -0.2696 16 6 8.3498 7.6510 -0.4587 17 6 8.8082 8.8518 -1.0421 18 1 8.4042 9.7990 -0.7164 19 6 9.7860 8.8150 -2.0420 20 7 10.3381 7.6764 -2.3758 21 14 10.3033 10.3912 -2.9009 22 1 11.4349 11.0083 -2.1634 23 1 10.7277 10.0816 -4.2899 24 1 9.1585 11.3365 -2.9322 25 6 7.0036 7.5250 -0.0632 26 6 6.5678 6.3615 0.4989 27 6 3.5556 1.4710 0.0008 28 8 4.2969 1.0215 -0.8468 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8388 1.7409 -2.1239 35 1 0.3971 2.1849 -1.1791 36 1 1.8297 3.2413 -1.1664 37 1 0.7847 2.2874 1.5902 38 1 5.3520 2.3589 2.6374 39 1 5.9325 1.5553 1.1590 40 1 7.5833 3.6029 1.8405 41 1 9.4663 4.5913 0.4493 42 1 10.2694 6.6618 -0.5704 43 1 11.0163 7.6509 -3.0688 44 1 6.3183 8.3475 -0.2054 45 1 5.5362 6.2635 0.8031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060973442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:01 Heat of formation + Delta-G solvation = -52.403277 kcal Electronic energy + Delta-G solvation = -29989.660525 eV Core-core repulsion = 25780.019752 eV Total energy + Delta-G solvation = -4209.640773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.78728 -39.67825 -38.76844 -37.47810 -36.98889 -35.51941 -34.44936 -33.06786 -32.81867 -29.83309 -29.71664 -29.44796 -28.22593 -25.87611 -24.81323 -23.61761 -22.23472 -21.33213 -20.84560 -20.51871 -19.69512 -18.16103 -17.63052 -17.25652 -16.88346 -16.47482 -16.06046 -15.86057 -15.53706 -15.25393 -15.11468 -14.87651 -14.45333 -14.29906 -13.93912 -13.73155 -13.38948 -13.17215 -12.98606 -12.66792 -12.60497 -12.37401 -12.34833 -12.09573 -11.84485 -11.70575 -11.41897 -11.37978 -11.16257 -10.99678 -10.97430 -10.73872 -10.44966 -10.27427 -9.96175 -9.73598 -9.49312 -9.43896 -9.09879 -8.89217 -7.54915 -6.87945 -6.61885 -4.34495 1.47141 1.90666 2.48882 2.80942 2.87442 2.98038 3.08659 3.10239 3.14156 3.30047 3.61010 3.72335 3.98229 4.08398 4.30562 4.67983 4.72628 4.74528 4.82523 4.90166 5.00202 5.06958 5.15508 5.28022 5.35047 5.43812 5.46994 5.51038 5.65388 5.67047 5.83940 6.18983 6.43931 6.54931 6.72152 6.84479 6.89613 7.06154 7.18531 7.19887 7.29046 7.63630 7.71094 7.83798 7.95482 8.05830 8.22064 8.31095 8.59196 8.68055 8.92662 8.99056 10.29150 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.002293 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.905642 B =12207.326602 C =12524.804237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C 0.124 3.876 4 C -0.151 4.151 5 N -0.719 5.719 6 C 0.710 3.290 7 O -0.540 6.540 8 N -0.559 5.559 9 C 0.100 3.900 10 C 0.486 3.514 11 O -0.521 6.521 12 N -0.645 5.645 13 C 0.002 3.998 14 C -0.118 4.118 15 C -0.142 4.142 16 C 0.101 3.899 17 C -0.460 4.460 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.811 5.811 21 Si 0.916 3.084 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.206 4.206 26 C -0.083 4.083 27 C 0.535 3.465 28 O -0.459 6.459 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.438 0.562 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.398 0.602 41 H 0.092 0.908 42 H 0.133 0.867 43 H 0.278 0.722 44 H 0.096 0.904 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.736 -16.839 5.198 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C 0.034 3.966 4 C -0.209 4.209 5 N -0.383 5.383 6 C 0.411 3.589 7 O -0.413 6.413 8 N -0.304 5.304 9 C -0.026 4.026 10 C 0.271 3.729 11 O -0.397 6.397 12 N -0.288 5.288 13 C -0.090 4.090 14 C -0.138 4.138 15 C -0.162 4.162 16 C 0.098 3.902 17 C -0.491 4.491 18 H 0.094 0.906 19 C -0.146 4.146 20 N -0.438 5.438 21 Si 0.741 3.259 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.226 4.226 26 C -0.103 4.103 27 C 0.321 3.679 28 O -0.327 6.327 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.282 0.718 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.231 0.769 41 H 0.110 0.890 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.553 -16.387 4.662 22.407 hybrid contribution 0.265 0.484 -0.100 0.561 sum -14.288 -15.902 4.562 21.860 Atomic orbital electron populations 1.21813 0.94044 1.02690 1.02447 1.21743 0.97576 0.92070 1.04203 1.21476 0.91864 0.95862 0.87438 1.22070 1.02221 1.01171 0.95459 1.45581 1.07843 1.62332 1.22588 1.15745 0.81015 0.78755 0.83393 1.91019 1.85354 1.43950 1.20984 1.45800 1.07683 1.54321 1.22605 1.21481 0.80292 0.97686 1.03122 1.20593 0.83150 0.87567 0.81633 1.90705 1.53321 1.56788 1.38847 1.42847 1.13852 1.24118 1.47978 1.17241 0.94413 0.86055 1.11308 1.20309 0.93279 0.98449 1.01799 1.21196 1.00879 0.93306 1.00802 1.17736 0.90120 0.93522 0.88814 1.19500 1.18255 0.94013 1.17297 0.90594 1.25889 0.94370 0.97574 0.96769 1.69756 1.21601 1.26095 1.26385 0.86190 0.79484 0.81684 0.78579 1.19507 1.20294 1.18729 1.20804 0.95677 0.97229 1.08887 1.20384 0.98035 0.92092 0.99796 1.20762 0.90644 0.76087 0.80371 1.90809 1.59158 1.44693 1.38064 0.92446 0.91595 0.91687 0.89155 0.90751 0.89759 0.89996 0.90709 0.71753 0.85765 0.85882 0.76876 0.88962 0.84958 0.91119 0.88603 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.41 37.16 0.35 -0.27 16 2 C -0.12 -0.71 5.30 -26.73 -0.14 -0.86 16 3 C 0.12 1.11 1.01 -132.10 -0.13 0.97 16 4 C -0.15 -1.24 8.61 37.16 0.32 -0.92 16 5 N -0.72 -6.64 5.62 -52.94 -0.30 -6.94 16 6 C 0.71 9.53 8.62 -88.02 -0.76 8.77 16 7 O -0.54 -8.96 17.48 5.33 0.09 -8.87 16 8 N -0.56 -7.49 2.09 -122.02 -0.26 -7.74 16 9 C 0.10 1.27 6.18 -5.19 -0.03 1.23 16 10 C 0.49 8.66 7.73 -10.99 -0.08 8.58 16 11 O -0.52 -11.54 13.85 5.55 0.08 -11.46 16 12 N -0.64 -11.33 5.30 -9.74 -0.05 -11.38 16 13 C 0.00 0.04 6.31 -83.57 -0.53 -0.48 16 14 C -0.12 -2.71 9.90 -39.79 -0.39 -3.11 16 15 C -0.14 -3.68 8.61 -39.26 -0.34 -4.02 16 16 C 0.10 2.74 5.55 -106.80 -0.59 2.14 16 17 C -0.46 -12.41 9.02 -37.85 -0.34 -12.75 16 18 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 19 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 20 N -0.81 -21.28 10.59 55.55 0.59 -20.69 16 21 Si 0.92 19.19 29.56 -169.99 -5.03 14.17 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 25 C -0.21 -5.34 9.74 -39.26 -0.38 -5.72 16 26 C -0.08 -2.05 8.61 -39.79 -0.34 -2.39 16 27 C 0.54 6.87 6.98 -10.56 -0.07 6.80 16 28 O -0.46 -7.00 17.76 5.59 0.10 -6.90 16 29 H 0.06 0.21 7.41 -51.93 -0.38 -0.18 16 30 H 0.07 0.24 6.42 -51.93 -0.33 -0.10 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.44 6.37 -51.93 -0.33 0.11 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.44 2.89 8.41 -40.82 -0.34 2.55 16 38 H 0.12 1.28 7.86 -51.93 -0.41 0.87 16 39 H 0.12 1.25 8.01 -51.93 -0.42 0.83 16 40 H 0.40 5.22 8.82 -40.82 -0.36 4.86 16 41 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16 43 H 0.28 6.67 8.30 -40.82 -0.34 6.34 16 44 H 0.10 2.37 8.06 -52.49 -0.42 1.94 16 45 H 0.11 2.62 6.22 -52.49 -0.33 2.29 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -35.35 379.21 -8.35 -43.70 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.73 Total: 10.75 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.57 Total: -0.34 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.02 Total: -46.76 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: 0.27 Total: -27.23 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.35 -8.35 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060973442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.700 kcal (2) G-P(sol) polarization free energy of solvation -35.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds