Wall clock time and date at job start Wed Apr 1 2020 04:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47240 * 2 1 4 4 C 1.52997 * 110.53470 * 302.82944 * 3 2 1 5 5 N 1.47308 * 110.72931 * 65.75130 * 3 2 1 6 6 C 1.34529 * 106.62086 * 118.58884 * 5 3 2 7 7 O 1.21538 * 123.76840 * 179.97438 * 6 5 3 8 8 N 1.33788 * 112.45662 * 359.97438 * 6 5 3 9 9 C 1.46503 * 124.17783 * 180.26991 * 8 6 5 10 10 C 1.50697 * 109.46901 * 269.70283 * 9 8 6 11 11 O 1.21284 * 120.00389 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00007 * 180.02562 * 10 9 8 13 13 C 1.39241 * 120.00338 * 175.70461 * 12 10 9 14 14 C 1.39477 * 119.83473 * 215.01329 * 13 12 10 15 15 C 1.36373 * 120.17038 * 179.72132 * 14 13 12 16 16 C 1.40872 * 119.82545 * 0.54293 * 15 14 13 17 17 C 1.41151 * 120.16519 * 179.74677 * 16 15 14 18 18 H 1.08004 * 120.00123 * 214.76866 * 17 16 15 19 19 C 1.39905 * 119.99814 * 34.76561 * 17 16 15 20 20 N 1.30868 * 120.00192 * 355.56461 * 19 17 16 21 21 Si 1.86806 * 119.99814 * 175.55922 * 19 17 16 22 22 H 1.48507 * 109.46813 * 90.00128 * 21 19 17 23 23 H 1.48495 * 109.46866 * 210.00182 * 21 19 17 24 24 H 1.48500 * 109.47138 * 330.00272 * 21 19 17 25 25 C 1.40870 * 119.67197 * 359.73042 * 16 15 14 26 26 C 1.36375 * 119.83054 * 359.97438 * 25 16 15 27 27 C 1.34763 * 111.64503 * 359.97438 * 8 6 5 28 28 O 1.21239 * 127.16036 * 179.97438 * 27 8 6 29 29 H 1.09001 * 109.46934 * 300.00252 * 1 2 3 30 30 H 1.09002 * 109.46699 * 59.99986 * 1 2 3 31 31 H 1.09001 * 109.47264 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46934 * 239.99748 * 2 1 3 33 33 H 1.08996 * 109.46663 * 120.00469 * 2 1 3 34 34 H 1.08997 * 109.46946 * 297.87037 * 4 3 2 35 35 H 1.09002 * 109.46982 * 57.87070 * 4 3 2 36 36 H 1.09004 * 109.46936 * 177.86989 * 4 3 2 37 37 H 0.97005 * 126.69244 * 298.61518 * 5 3 2 38 38 H 1.08996 * 109.46788 * 29.69760 * 9 8 6 39 39 H 1.09000 * 109.46862 * 149.69764 * 9 8 6 40 40 H 0.97006 * 119.99995 * 355.70142 * 12 10 9 41 41 H 1.08000 * 119.91739 * 359.97438 * 14 13 12 42 42 H 1.07993 * 120.09102 * 180.27129 * 15 14 13 43 43 H 0.96995 * 120.00385 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.08746 * 180.02562 * 25 16 15 45 45 H 1.07995 * 119.91806 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4866 2.2074 -1.2039 5 7 1.6804 2.1227 1.2562 6 6 2.8363 2.4703 1.8501 7 8 2.9002 3.0543 2.9141 8 7 3.9076 2.1015 1.1386 9 6 5.2924 2.3466 1.5491 10 6 5.7494 3.6760 1.0060 11 8 4.9931 4.3519 0.3412 12 7 6.9990 4.1134 1.2583 13 6 7.4514 5.2981 0.6833 14 6 8.7870 5.4173 0.2994 15 6 9.2360 6.5725 -0.2696 16 6 8.3498 7.6510 -0.4587 17 6 8.8082 8.8518 -1.0421 18 1 8.4042 9.7990 -0.7164 19 6 9.7860 8.8150 -2.0420 20 7 10.3381 7.6764 -2.3758 21 14 10.3033 10.3912 -2.9009 22 1 11.4349 11.0083 -2.1634 23 1 10.7277 10.0816 -4.2899 24 1 9.1585 11.3365 -2.9322 25 6 7.0036 7.5250 -0.0632 26 6 6.5678 6.3615 0.4989 27 6 3.5556 1.4710 0.0008 28 8 4.2969 1.0215 -0.8468 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8388 1.7409 -2.1239 35 1 0.3971 2.1849 -1.1791 36 1 1.8297 3.2413 -1.1664 37 1 0.7847 2.2874 1.5902 38 1 5.3520 2.3589 2.6374 39 1 5.9325 1.5553 1.1590 40 1 7.5833 3.6029 1.8405 41 1 9.4663 4.5913 0.4493 42 1 10.2694 6.6618 -0.5704 43 1 11.0163 7.6509 -3.0688 44 1 6.3183 8.3475 -0.2054 45 1 5.5362 6.2635 0.8031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060973442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:00 Heat of formation + Delta-G solvation = -76.985748 kcal Electronic energy + Delta-G solvation = -29990.726501 eV Core-core repulsion = 25780.019752 eV Total energy + Delta-G solvation = -4210.706749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.75296 -41.23411 -39.83645 -39.17013 -38.01835 -36.63398 -36.14983 -34.79731 -33.64771 -31.57237 -31.20367 -30.40031 -29.65120 -26.92122 -26.31031 -24.47895 -23.74616 -22.99192 -22.14639 -21.57046 -21.15080 -19.34114 -19.16580 -18.78068 -18.27204 -17.49760 -17.32035 -17.06483 -16.76081 -16.60174 -16.36765 -15.97531 -15.72575 -15.37206 -15.29752 -14.97163 -14.82839 -14.49938 -14.12396 -14.07357 -13.67593 -13.67213 -13.43694 -13.28047 -13.11134 -13.00424 -12.86936 -12.78717 -12.51969 -12.37493 -12.00358 -11.90700 -11.83386 -11.56865 -11.42141 -11.24825 -11.20779 -10.80400 -10.64483 -10.48336 -9.50954 -8.78709 -8.53194 -6.36335 0.47575 0.72163 0.94528 1.09542 1.38203 1.40353 1.51787 1.65298 1.77283 2.04448 2.22331 2.33143 2.77377 2.79083 3.42173 3.58025 3.65467 3.67979 3.83220 4.07297 4.21758 4.30654 4.36417 4.36937 4.45325 4.47206 4.55403 4.72084 4.81623 4.88927 5.00504 5.08449 5.10134 5.10831 5.19570 5.28853 5.38727 5.44221 5.65631 5.73874 5.85465 5.87590 5.96828 6.09106 6.23138 6.35013 6.57697 6.64913 6.93500 6.95380 7.00234 7.24662 8.39661 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.002293 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.905642 B =12207.326602 C =12524.804237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.130 3.870 4 C -0.149 4.149 5 N -0.697 5.697 6 C 0.704 3.296 7 O -0.577 6.577 8 N -0.566 5.566 9 C 0.104 3.896 10 C 0.482 3.518 11 O -0.568 6.568 12 N -0.636 5.636 13 C 0.018 3.982 14 C -0.114 4.114 15 C -0.159 4.159 16 C 0.069 3.931 17 C -0.497 4.497 18 H 0.072 0.928 19 C 0.027 3.973 20 N -0.840 5.840 21 Si 0.989 3.011 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.264 1.264 25 C -0.223 4.223 26 C -0.096 4.096 27 C 0.526 3.474 28 O -0.488 6.488 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.044 0.956 37 H 0.451 0.549 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.423 0.577 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.286 0.714 44 H 0.094 0.906 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.607 -18.814 5.321 25.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C 0.040 3.960 4 C -0.207 4.207 5 N -0.363 5.363 6 C 0.405 3.595 7 O -0.453 6.453 8 N -0.311 5.311 9 C -0.021 4.021 10 C 0.269 3.731 11 O -0.447 6.447 12 N -0.281 5.281 13 C -0.075 4.075 14 C -0.134 4.134 15 C -0.179 4.179 16 C 0.066 3.934 17 C -0.527 4.527 18 H 0.090 0.910 19 C -0.185 4.185 20 N -0.467 5.467 21 Si 0.810 3.190 22 H -0.183 1.183 23 H -0.193 1.193 24 H -0.188 1.188 25 C -0.243 4.243 26 C -0.116 4.116 27 C 0.314 3.686 28 O -0.358 6.358 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.064 0.936 37 H 0.299 0.701 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.261 0.739 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.454 -18.420 4.813 24.521 hybrid contribution 0.451 0.965 -0.090 1.069 sum -15.002 -17.455 4.723 23.496 Atomic orbital electron populations 1.21835 0.92092 1.03715 1.03160 1.21766 0.99100 0.89493 1.04555 1.21634 0.89231 0.97871 0.87232 1.22108 1.04311 0.99142 0.95166 1.45527 1.07504 1.61127 1.22122 1.15940 0.81881 0.78562 0.83123 1.90992 1.85946 1.45753 1.22603 1.45974 1.07974 1.54183 1.22948 1.21631 0.80710 0.95037 1.04682 1.21549 0.82274 0.88853 0.80445 1.90690 1.54532 1.58584 1.40865 1.42748 1.14551 1.22774 1.48071 1.17292 0.93904 0.87030 1.09320 1.20578 0.94017 0.98490 1.00345 1.21202 1.00346 0.94355 1.02035 1.18050 0.90807 0.94567 0.89950 1.19719 1.20071 0.93941 1.18996 0.90968 1.26760 0.93776 1.01155 0.96801 1.69813 1.22003 1.27982 1.26936 0.85090 0.79128 0.77158 0.77605 1.18267 1.19305 1.18767 1.20912 0.95617 0.97966 1.09834 1.20459 0.98220 0.92556 1.00336 1.21454 0.92340 0.75180 0.79611 1.90786 1.60322 1.45950 1.38778 0.91793 0.90827 0.90579 0.88812 0.90495 0.89447 0.86630 0.93634 0.70108 0.82903 0.82767 0.73930 0.85284 0.86070 0.90376 0.88824 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.41 71.98 0.68 -0.03 16 2 C -0.11 -1.06 5.30 30.59 0.16 -0.89 16 3 C 0.13 2.10 1.01 2.98 0.00 2.10 16 4 C -0.15 -2.23 8.61 71.98 0.62 -1.61 16 5 N -0.70 -11.74 5.62 -439.83 -2.47 -14.21 16 6 C 0.70 18.17 8.62 179.44 1.55 19.71 16 7 O -0.58 -18.77 17.48 -3.83 -0.07 -18.83 16 8 N -0.57 -14.48 2.09 -777.22 -1.63 -16.10 16 9 C 0.10 2.45 6.18 85.63 0.53 2.98 16 10 C 0.48 16.71 7.73 87.66 0.68 17.39 16 11 O -0.57 -25.41 13.85 -3.04 -0.04 -25.45 16 12 N -0.64 -21.35 5.30 -303.11 -1.61 -22.96 16 13 C 0.02 0.81 6.31 38.56 0.24 1.05 16 14 C -0.11 -5.18 9.90 22.13 0.22 -4.96 16 15 C -0.16 -8.45 8.61 22.48 0.19 -8.25 16 16 C 0.07 3.88 5.55 -21.28 -0.12 3.76 16 17 C -0.50 -27.84 9.02 23.39 0.21 -27.63 16 18 H 0.07 3.92 7.85 -2.91 -0.02 3.90 16 19 C 0.03 1.41 5.42 85.24 0.46 1.87 16 20 N -0.84 -44.84 10.59 21.82 0.23 -44.60 16 21 Si 0.99 39.70 29.56 68.60 2.03 41.73 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 C -0.22 -12.09 9.74 22.48 0.22 -11.87 16 26 C -0.10 -4.83 8.61 22.14 0.19 -4.64 16 27 C 0.53 12.93 6.98 87.94 0.61 13.55 16 28 O -0.49 -14.49 17.76 -2.90 -0.05 -14.54 16 29 H 0.06 0.24 7.41 -2.39 -0.02 0.22 16 30 H 0.07 0.26 6.42 -2.39 -0.02 0.24 16 31 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.12 0.92 6.37 -2.39 -0.02 0.90 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.45 4.99 8.41 -92.70 -0.78 4.21 16 38 H 0.15 2.74 7.86 -2.39 -0.02 2.72 16 39 H 0.15 2.67 8.01 -2.39 -0.02 2.65 16 40 H 0.42 9.92 8.82 -92.70 -0.82 9.10 16 41 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 42 H 0.12 6.64 6.13 -2.91 -0.02 6.63 16 43 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 44 H 0.09 4.91 8.06 -2.91 -0.02 4.89 16 45 H 0.10 5.16 6.22 -2.91 -0.02 5.14 16 Total: -1.00 -80.76 379.21 2.31 -78.45 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.53 Total: 34.01 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 6.45 Total: 2.52 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -5.48 Total: -97.88 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -0.16 Total: -58.83 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -80.76 2.31 -78.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060973442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.466 kcal (2) G-P(sol) polarization free energy of solvation -80.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds