Wall clock time and date at job start Wed Apr 1 2020 03:18:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35992 * 116.99843 * 2 1
4 4 C 1.38564 * 120.07465 * 359.97438 * 3 2 1
5 5 C 1.38242 * 120.00349 * 180.02562 * 4 3 2
6 6 C 1.38260 * 120.14444 * 0.02562 * 5 4 3
7 7 C 1.38241 * 120.14260 * 359.97438 * 6 5 4
8 8 C 1.38570 * 120.00441 * 359.72658 * 7 6 5
9 9 O 1.35987 * 120.07523 * 180.27332 * 8 7 6
10 10 C 1.42902 * 117.00290 * 0.27721 * 9 8 7
11 11 C 1.50704 * 109.47294 * 179.97438 * 10 9 8
12 12 O 1.21297 * 119.99821 * 359.97438 * 11 10 9
13 13 N 1.34768 * 119.99666 * 180.02562 * 11 10 9
14 14 C 1.39485 * 119.99773 * 179.97438 * 13 11 10
15 15 C 1.36103 * 126.21211 * 359.68965 * 14 13 11
16 16 C 1.39762 * 107.82696 * 179.90228 * 15 14 13
17 17 C 1.50699 * 125.83989 * 180.14268 * 16 15 14
18 18 N 1.30849 * 108.31770 * 0.36406 * 16 15 14
19 19 N 1.35260 * 126.21521 * 179.97438 * 14 13 11
20 20 C 1.46501 * 126.04959 * 359.96603 * 19 14 13
21 21 C 1.50702 * 109.46992 * 89.99575 * 20 19 14
22 22 H 1.08000 * 120.00127 * 0.02562 * 21 20 19
23 23 C 1.37877 * 119.99958 * 179.97438 * 21 20 19
24 24 N 1.31515 * 119.99959 * 0.02562 * 23 21 20
25 25 Si 1.86798 * 120.00222 * 180.02562 * 23 21 20
26 26 H 1.48506 * 109.46945 * 60.00018 * 25 23 21
27 27 H 1.48495 * 109.47332 * 179.97438 * 25 23 21
28 28 H 1.48499 * 109.47235 * 300.00754 * 25 23 21
29 29 H 1.09001 * 109.47103 * 60.00803 * 1 2 3
30 30 H 1.09004 * 109.47054 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.47187 * 300.00363 * 1 2 3
32 32 H 1.08004 * 119.99967 * 359.97438 * 4 3 2
33 33 H 1.08000 * 119.92979 * 179.97438 * 5 4 3
34 34 H 1.07994 * 119.92810 * 179.97438 * 6 5 4
35 35 H 1.08005 * 119.99604 * 180.02562 * 7 6 5
36 36 H 1.08999 * 109.46990 * 300.00122 * 10 9 8
37 37 H 1.09000 * 109.46884 * 60.00081 * 10 9 8
38 38 H 0.97001 * 120.00944 * 0.02562 * 13 11 10
39 39 H 1.07995 * 126.09056 * 0.02562 * 15 14 13
40 40 H 1.08998 * 109.47026 * 270.23409 * 17 16 15
41 41 H 1.08997 * 109.47053 * 30.23782 * 17 16 15
42 42 H 1.08998 * 109.46933 * 150.23499 * 17 16 15
43 43 H 1.08994 * 109.46867 * 209.99841 * 20 19 14
44 44 H 1.09004 * 109.46843 * 330.00152 * 20 19 14
45 45 H 0.97004 * 120.00210 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0464 1.2117 0.0000
4 6 1.2932 2.3748 -0.0005
5 6 1.9223 3.6058 -0.0011
6 6 3.3029 3.6799 -0.0016
7 6 4.0602 2.5234 -0.0011
8 6 3.4359 1.2863 0.0057
9 8 4.1795 0.1478 0.0119
10 6 5.6003 0.3007 0.0171
11 6 6.2519 -1.0581 0.0241
12 8 5.5669 -2.0592 0.0251
13 7 7.5956 -1.1610 0.0304
14 6 8.1987 -2.4187 0.0374
15 6 7.5562 -3.6185 0.0447
16 6 8.5271 -4.6239 0.0479
17 6 8.2614 -6.1072 0.0528
18 7 9.7063 -4.0567 0.0505
19 7 9.5282 -2.6675 0.0436
20 6 10.5935 -1.6617 0.0434
21 6 10.9531 -1.3107 1.4642
22 1 10.4399 -1.7893 2.2852
23 6 11.9382 -0.3794 1.7160
24 7 12.5635 0.2029 0.7163
25 14 12.3846 0.0552 3.4770
26 1 12.8540 -1.1636 4.1838
27 1 13.4651 1.0738 3.4769
28 1 11.1898 0.6001 4.1705
29 1 -0.3633 0.5137 -0.8901
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8899
32 1 0.2146 2.3196 -0.0014
33 1 1.3341 4.5115 -0.0019
34 1 3.7907 4.6434 -0.0024
35 1 5.1386 2.5841 -0.0011
36 1 5.9100 0.8480 -0.8732
37 1 5.9030 0.8530 0.9067
38 1 8.1435 -0.3605 0.0307
39 1 6.4865 -3.7674 0.0458
40 1 8.1934 -6.4607 1.0817
41 1 7.3233 -6.3100 -0.4638
42 1 9.0753 -6.6238 -0.4558
43 1 11.4706 -2.0616 -0.4652
44 1 10.2486 -0.7674 -0.4756
45 1 13.2563 0.8584 0.8934
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000068219633.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:18:33
Heat of formation + Delta-G solvation = -17.368203 kcal
Electronic energy + Delta-G solvation = -29170.470561 eV
Core-core repulsion = 24962.349024 eV
Total energy + Delta-G solvation = -4208.121538 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-42.49731 -41.59861 -40.64188 -39.28033 -37.74495 -36.32685 -35.62827 -33.86222
-31.76771 -31.28008 -30.81898 -30.24390 -28.66212 -28.05611 -27.81583 -24.82218
-23.81528 -23.26132 -22.51743 -21.33673 -20.82338 -19.72970 -18.91046 -18.53500
-18.28401 -17.68292 -17.61570 -17.28184 -16.69598 -16.64979 -16.23325 -16.04247
-15.68924 -15.64725 -15.43913 -15.31404 -14.68286 -14.47250 -14.37568 -14.06047
-13.69730 -13.63865 -13.50289 -13.39579 -13.14245 -12.98765 -12.91335 -12.70440
-12.31023 -12.27393 -12.19075 -12.01781 -11.99125 -11.97378 -11.71999 -11.48986
-10.97832 -10.75975 -9.72584 -9.66458 -9.12223 -8.83813 -8.36426 -6.53845
0.31314 0.45938 0.70515 1.01679 1.37102 1.39671 1.47331 1.54879
1.90709 1.99811 2.32525 2.40409 2.53046 2.77146 2.94207 3.27952
3.80626 3.88004 3.90360 4.01779 4.05673 4.11734 4.20581 4.32876
4.40716 4.45445 4.51113 4.59259 4.69444 4.73625 4.75354 4.80353
4.84667 4.88506 4.93643 5.18945 5.21288 5.22095 5.35636 5.50897
5.55553 5.75112 5.76624 5.92547 5.99904 6.09127 6.24536 6.55741
6.60320 6.85729 6.99047 7.18177 8.69850
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.009969 B = 0.002758 C = 0.002257
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2808.058776 B =10151.258808 C =12403.072848
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.339 6.339
3 C 0.075 3.925
4 C -0.174 4.174
5 C -0.116 4.116
6 C -0.119 4.119
7 C -0.176 4.176
8 C 0.068 3.932
9 O -0.311 6.311
10 C 0.053 3.947
11 C 0.522 3.478
12 O -0.527 6.527
13 N -0.631 5.631
14 C 0.301 3.699
15 C -0.309 4.309
16 C 0.059 3.941
17 C -0.061 4.061
18 N -0.327 5.327
19 N -0.364 5.364
20 C 0.271 3.729
21 C -0.557 4.557
22 H 0.047 0.953
23 C 0.030 3.970
24 N -0.913 5.913
25 Si 0.967 3.033
26 H -0.280 1.280
27 H -0.272 1.272
28 H -0.264 1.264
29 H 0.069 0.931
30 H 0.108 0.892
31 H 0.068 0.932
32 H 0.157 0.843
33 H 0.156 0.844
34 H 0.155 0.845
35 H 0.156 0.844
36 H 0.131 0.869
37 H 0.127 0.873
38 H 0.427 0.573
39 H 0.164 0.836
40 H 0.085 0.915
41 H 0.094 0.906
42 H 0.076 0.924
43 H 0.028 0.972
44 H 0.053 0.947
45 H 0.275 0.725
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.732 8.965 -2.368 24.551
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.254 6.254
3 C 0.029 3.971
4 C -0.193 4.193
5 C -0.134 4.134
6 C -0.137 4.137
7 C -0.195 4.195
8 C 0.023 3.977
9 O -0.225 6.225
10 C -0.025 4.025
11 C 0.309 3.691
12 O -0.400 6.400
13 N -0.281 5.281
14 C 0.079 3.921
15 C -0.341 4.341
16 C -0.106 4.106
17 C -0.119 4.119
18 N -0.153 5.153
19 N -0.150 5.150
20 C 0.153 3.847
21 C -0.596 4.596
22 H 0.065 0.935
23 C -0.172 4.172
24 N -0.550 5.550
25 Si 0.791 3.209
26 H -0.206 1.206
27 H -0.196 1.196
28 H -0.189 1.189
29 H 0.087 0.913
30 H 0.127 0.873
31 H 0.086 0.914
32 H 0.175 0.825
33 H 0.174 0.826
34 H 0.172 0.828
35 H 0.174 0.826
36 H 0.149 0.851
37 H 0.144 0.856
38 H 0.265 0.735
39 H 0.181 0.819
40 H 0.103 0.897
41 H 0.113 0.887
42 H 0.095 0.905
43 H 0.046 0.954
44 H 0.070 0.930
45 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -21.753 7.968 -2.431 23.294
hybrid contribution 0.157 0.843 0.751 1.140
sum -21.597 8.811 -1.680 23.385
Atomic orbital electron populations
1.23324 0.76607 1.05222 1.02387 1.86198 1.23315 1.26727 1.89159
1.18690 0.89404 0.86150 1.02818 1.21390 1.01059 0.90957 1.05852
1.21306 0.94957 0.97641 0.99454 1.21285 0.94093 0.98541 0.99765
1.21460 1.01904 0.90514 1.05588 1.18685 0.88685 0.86150 1.04162
1.86166 1.17017 1.29593 1.89712 1.22443 0.80129 0.92626 1.07287
1.20710 0.80501 0.92260 0.75662 1.90670 1.62852 1.39211 1.47290
1.42619 1.07072 1.06139 1.72261 1.18183 0.84532 0.87584 1.01817
1.21479 1.01160 0.88954 1.22493 1.22871 0.89731 0.98994 0.99014
1.20227 1.03366 0.84612 1.03735 1.77311 1.23165 0.86677 1.28101
1.49193 1.03724 1.05343 1.56709 1.19273 0.83954 0.83663 0.97854
1.21376 1.22022 1.24541 0.91622 0.93491 1.25645 0.94682 0.94931
1.01936 1.69977 1.24650 1.27511 1.32890 0.85472 0.78492 0.77960
0.78970 1.20584 1.19646 1.18853 0.91267 0.87340 0.91364 0.82539
0.82595 0.82761 0.82627 0.85102 0.85567 0.73496 0.81886 0.89664
0.88738 0.90463 0.95409 0.92966 0.91578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.27 9.81 113.37 1.11 1.38 16
2 O -0.34 -8.76 10.28 -79.59 -0.82 -9.58 16
3 C 0.07 1.77 6.70 22.57 0.15 1.92 16
4 C -0.17 -2.81 9.04 22.35 0.20 -2.61 16
5 C -0.12 -1.51 10.04 22.28 0.22 -1.28 16
6 C -0.12 -1.65 10.04 22.28 0.22 -1.42 16
7 C -0.18 -3.12 9.04 22.35 0.20 -2.92 16
8 C 0.07 1.68 6.70 22.57 0.15 1.83 16
9 O -0.31 -9.16 9.45 -66.99 -0.63 -9.79 16
10 C 0.05 1.22 5.22 71.24 0.37 1.59 16
11 C 0.52 16.96 7.87 87.66 0.69 17.65 16
12 O -0.53 -21.28 13.63 15.95 0.22 -21.06 16
13 N -0.63 -21.83 5.42 -308.56 -1.67 -23.50 16
14 C 0.30 13.02 7.66 131.31 1.01 14.02 16
15 C -0.31 -13.13 9.58 22.14 0.21 -12.92 16
16 C 0.06 2.43 7.21 43.07 0.31 2.74 16
17 C -0.06 -1.78 10.44 71.24 0.74 -1.03 16
18 N -0.33 -15.71 12.56 -47.45 -0.60 -16.31 16
19 N -0.36 -17.54 3.60 -348.71 -1.26 -18.80 16
20 C 0.27 13.79 6.01 85.63 0.51 14.31 16
21 C -0.56 -30.11 9.39 25.60 0.24 -29.87 16
22 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16
23 C 0.03 1.57 5.46 84.65 0.46 2.03 16
24 N -0.91 -49.09 13.29 21.45 0.28 -48.80 16
25 Si 0.97 41.49 29.54 68.60 2.03 43.52 16
26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16
27 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16
28 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16
29 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16
30 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16
31 H 0.07 0.73 7.66 -2.39 -0.02 0.72 16
32 H 0.16 1.64 6.30 -2.91 -0.02 1.63 16
33 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16
34 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16
35 H 0.16 2.00 6.30 -2.91 -0.02 1.98 16
36 H 0.13 2.09 7.65 -2.39 -0.02 2.07 16
37 H 0.13 2.18 7.68 -2.39 -0.02 2.16 16
38 H 0.43 12.85 7.97 -92.71 -0.74 12.12 16
39 H 0.16 6.87 5.83 -2.91 -0.02 6.85 16
40 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16
41 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16
42 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16
43 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16
44 H 0.05 2.52 7.50 -2.39 -0.02 2.50 16
45 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16
Total: -1.00 -77.56 386.79 4.67 -72.89
By element:
Atomic # 1 Polarization: 25.71 SS G_CDS: 0.30 Total: 26.01 kcal
Atomic # 6 Polarization: -1.40 SS G_CDS: 6.82 Total: 5.42 kcal
Atomic # 7 Polarization: -104.17 SS G_CDS: -3.24 Total: -107.41 kcal
Atomic # 8 Polarization: -39.19 SS G_CDS: -1.23 Total: -40.43 kcal
Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal
Total: -77.56 4.67 -72.89 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068219633.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.520 kcal
(2) G-P(sol) polarization free energy of solvation -77.559 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.039 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.889 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.368 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds