Wall clock time and date at job start Wed Apr 1 2020 03:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35715 * 116.99749 * 2 1 4 4 C 1.39187 * 119.86538 * 0.02562 * 3 2 1 5 5 C 1.37541 * 120.24488 * 179.97438 * 4 3 2 6 6 C 1.39864 * 119.96107 * 359.81148 * 5 4 3 7 7 C 1.47277 * 120.13638 * 180.23437 * 6 5 4 8 8 O 1.21628 * 119.99862 * 180.21043 * 7 6 5 9 9 N 1.34770 * 119.99726 * 0.20711 * 7 6 5 10 10 C 1.39390 * 119.99833 * 180.02562 * 9 7 6 11 11 C 1.36132 * 126.22180 * 359.68920 * 10 9 7 12 12 C 1.39756 * 107.82801 * 179.84635 * 11 10 9 13 13 C 1.50701 * 125.83428 * 180.16843 * 12 11 10 14 14 N 1.30836 * 108.32467 * 0.42248 * 12 11 10 15 15 N 1.35269 * 126.22145 * 180.02562 * 10 9 7 16 16 C 1.46503 * 126.04549 * 359.97438 * 15 10 9 17 17 C 1.50701 * 109.46680 * 90.00245 * 16 15 10 18 18 H 1.07997 * 120.00732 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99603 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99978 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00239 * 359.97438 * 19 17 16 22 22 H 1.48490 * 109.46971 * 90.00124 * 21 19 17 23 23 H 1.48501 * 109.46994 * 210.00523 * 21 19 17 24 24 H 1.48501 * 109.47039 * 330.00190 * 21 19 17 25 25 C 1.40309 * 119.72889 * 0.44001 * 6 5 4 26 26 O 1.35658 * 120.12305 * 179.79572 * 25 6 5 27 27 C 1.42903 * 117.00276 * 179.72519 * 26 25 6 28 28 C 1.38435 * 119.75479 * 359.51740 * 25 6 5 29 29 H 1.09002 * 109.47178 * 60.00548 * 1 2 3 30 30 H 1.09004 * 109.46689 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47584 * 300.00116 * 1 2 3 32 32 H 1.08002 * 119.87203 * 359.97438 * 4 3 2 33 33 H 1.08003 * 120.01451 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00200 * 0.02562 * 9 7 6 35 35 H 1.08001 * 126.08348 * 0.02562 * 11 10 9 36 36 H 1.09005 * 109.47041 * 270.27591 * 13 12 11 37 37 H 1.09001 * 109.47212 * 30.27349 * 13 12 11 38 38 H 1.08996 * 109.47211 * 150.27728 * 13 12 11 39 39 H 1.08999 * 109.47304 * 210.00454 * 16 15 10 40 40 H 1.09003 * 109.47161 * 330.00535 * 16 15 10 41 41 H 0.96994 * 120.00145 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47382 * 179.97438 * 27 26 25 43 43 H 1.09001 * 109.46938 * 59.99682 * 27 26 25 44 44 H 1.09004 * 109.46926 * 299.99803 * 27 26 25 45 45 H 1.08003 * 119.98188 * 180.24949 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2093 0.0000 4 6 1.2842 2.3748 0.0005 5 6 1.9004 3.6044 0.0011 6 6 3.2967 3.6860 0.0051 7 6 3.9606 5.0006 0.0109 8 8 5.1749 5.0686 0.0105 9 7 3.2224 6.1282 0.0166 10 6 3.8507 7.3724 0.0215 11 6 5.1936 7.5954 0.0272 12 6 5.3977 8.9780 0.0272 13 6 6.7352 9.6724 0.0290 14 7 4.2291 9.5664 0.0309 15 7 3.2369 8.5778 0.0279 16 6 1.7901 8.8084 0.0304 17 6 1.2955 8.8807 1.4520 18 1 1.9893 8.7667 2.2718 19 6 -0.0431 9.0924 1.7063 20 7 -0.4748 9.1559 2.9469 21 14 -1.2432 9.2903 0.2885 22 1 -1.7812 7.9602 -0.0939 23 1 -2.3606 10.1750 0.7058 24 1 -0.5418 9.8933 -0.8732 25 6 4.0624 2.5102 -0.0009 26 8 5.4171 2.5800 -0.0012 27 6 6.1306 1.3419 -0.0013 28 6 3.4302 1.2786 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 0.2059 2.3132 0.0005 33 1 1.3064 4.5064 0.0019 34 1 2.2539 6.0739 0.0172 35 1 5.9641 6.8386 0.0283 36 1 7.0585 9.8356 1.0571 37 1 7.4674 9.0520 -0.4879 38 1 6.6473 10.6317 -0.4808 39 1 1.5709 9.7470 -0.4788 40 1 1.2907 7.9892 -0.4869 41 1 -1.4163 9.3052 3.1258 42 1 7.2025 1.5401 -0.0021 43 1 5.8665 0.7704 -0.8911 44 1 5.8671 0.7706 0.8889 45 1 4.0160 0.3713 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068915512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:05 Heat of formation + Delta-G solvation = 8.325272 kcal Electronic energy + Delta-G solvation = -29979.782920 eV Core-core repulsion = 25772.775535 eV Total energy + Delta-G solvation = -4207.007385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.12843 -40.57762 -39.40988 -38.66806 -36.58481 -34.67741 -33.70023 -32.14654 -31.31570 -30.39344 -29.45069 -28.38711 -27.57717 -27.29272 -26.26342 -23.91940 -22.64798 -22.23538 -21.24353 -19.83091 -19.36432 -18.91759 -17.27920 -17.16137 -17.11196 -16.57253 -16.27733 -16.17908 -15.78285 -15.30322 -15.04120 -15.03122 -14.70044 -14.31798 -13.85242 -13.76054 -13.34118 -13.13623 -12.89152 -12.85539 -12.69437 -12.63279 -12.55455 -12.28008 -11.86477 -11.82789 -11.80440 -11.71418 -11.31222 -11.11981 -10.91911 -10.82292 -10.40561 -10.18006 -9.86728 -9.73812 -9.41340 -8.92416 -8.85515 -8.38249 -7.88486 -7.38136 -6.32254 -4.36299 0.71197 1.11990 2.47198 2.75675 2.83610 3.05651 3.09051 3.10483 3.17389 3.18412 3.52319 3.75858 3.85715 4.14654 4.38865 4.64789 4.70689 4.74844 4.81475 4.81729 4.94016 4.97799 4.98165 5.11270 5.18516 5.29731 5.35282 5.36073 5.59287 5.71566 5.89684 6.01399 6.07229 6.07830 6.17924 6.22086 6.29732 6.37832 6.44168 6.73688 6.81103 6.90286 7.15606 7.22013 7.52478 7.63931 7.86360 8.23495 8.43101 8.63579 8.75486 9.22461 10.80028 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.003911 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3323.136233 B = 7158.142627 C =10075.013988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.193 3.807 4 C -0.251 4.251 5 C -0.003 4.003 6 C -0.202 4.202 7 C 0.571 3.429 8 O -0.495 6.495 9 N -0.641 5.641 10 C 0.310 3.690 11 C -0.292 4.292 12 C 0.055 3.945 13 C -0.062 4.062 14 N -0.284 5.284 15 N -0.346 5.346 16 C 0.230 3.770 17 C -0.544 4.544 18 H 0.082 0.918 19 C 0.080 3.920 20 N -0.883 5.883 21 Si 0.870 3.130 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.263 1.263 25 C 0.228 3.772 26 O -0.273 6.273 27 C 0.019 3.981 28 C -0.258 4.258 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.411 0.589 35 H 0.164 0.836 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.033 0.967 41 H 0.269 0.731 42 H 0.104 0.896 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 -19.468 -8.120 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.225 6.225 3 C 0.147 3.853 4 C -0.269 4.269 5 C -0.022 4.022 6 C -0.207 4.207 7 C 0.359 3.641 8 O -0.369 6.369 9 N -0.289 5.289 10 C 0.088 3.912 11 C -0.324 4.324 12 C -0.111 4.111 13 C -0.121 4.121 14 N -0.109 5.109 15 N -0.131 5.131 16 C 0.111 3.889 17 C -0.583 4.583 18 H 0.100 0.900 19 C -0.124 4.124 20 N -0.520 5.520 21 Si 0.696 3.304 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.187 1.187 25 C 0.178 3.822 26 O -0.183 6.183 27 C -0.076 4.076 28 C -0.278 4.278 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.248 0.752 35 H 0.182 0.818 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.834 -18.340 -7.994 20.582 hybrid contribution -1.554 -0.858 -0.418 1.824 sum 3.280 -19.198 -8.411 21.215 Atomic orbital electron populations 1.23170 0.77593 1.04258 1.02083 1.86022 1.22082 1.26844 1.87595 1.18884 0.91497 0.84255 0.90709 1.21075 1.00631 0.91629 1.13603 1.21042 0.92218 0.98155 0.90792 1.19010 0.92828 0.91120 1.17716 1.17687 0.86826 0.82712 0.76905 1.90750 1.12824 1.86210 1.47103 1.42650 1.10752 1.02775 1.72722 1.17859 0.90980 0.80103 1.02298 1.21307 0.93462 0.96064 1.21571 1.22045 0.94572 0.92989 1.01447 1.20026 0.90342 0.99441 1.02273 1.77338 0.95361 1.12148 1.26074 1.48862 1.07385 1.00753 1.56131 1.19912 0.71234 0.98162 0.99609 1.21221 0.94572 1.52074 0.90391 0.90004 1.24821 0.97772 0.94105 0.95738 1.69875 1.15812 1.47728 1.18566 0.86942 0.81547 0.78984 0.82940 1.19696 1.20359 1.18708 1.18559 0.83208 0.91458 0.88930 1.86421 1.14029 1.31754 1.86127 1.23210 0.97493 0.85492 1.01383 1.20287 0.92622 0.97403 1.17454 0.92115 0.87993 0.91990 0.84409 0.84229 0.75232 0.81843 0.91191 0.91075 0.91571 0.92744 0.94902 0.92070 0.87770 0.92447 0.92380 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.80 101.05 0.99 1.13 16 2 O -0.31 -2.98 10.48 -18.85 -0.20 -3.18 16 3 C 0.19 2.09 6.69 -39.06 -0.26 1.83 16 4 C -0.25 -2.65 9.01 -39.48 -0.36 -3.00 16 5 C 0.00 -0.04 9.52 -39.23 -0.37 -0.41 16 6 C -0.20 -2.97 5.89 -104.84 -0.62 -3.58 16 7 C 0.57 10.16 7.72 -12.59 -0.10 10.07 16 8 O -0.50 -9.91 12.27 -16.68 -0.20 -10.11 16 9 N -0.64 -11.90 5.36 -12.49 -0.07 -11.97 16 10 C 0.31 6.73 7.66 -153.22 -1.17 5.56 16 11 C -0.29 -6.20 9.58 -39.77 -0.38 -6.58 16 12 C 0.05 1.12 7.21 -82.45 -0.59 0.53 16 13 C -0.06 -0.95 10.44 36.01 0.38 -0.57 16 14 N -0.28 -6.69 12.56 33.65 0.42 -6.27 16 15 N -0.35 -8.16 3.60 -61.58 -0.22 -8.38 16 16 C 0.23 5.47 5.07 -5.19 -0.03 5.44 16 17 C -0.54 -14.99 9.94 -34.44 -0.34 -15.33 16 18 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 19 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 20 N -0.88 -25.69 13.96 55.43 0.77 -24.91 16 21 Si 0.87 19.43 27.47 -169.99 -4.67 14.76 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 25 C 0.23 3.07 6.70 -38.73 -0.26 2.81 16 26 O -0.27 -3.75 8.56 -40.60 -0.35 -4.10 16 27 C 0.02 0.16 9.81 101.05 0.99 1.15 16 28 C -0.26 -2.88 8.96 -39.34 -0.35 -3.23 16 29 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.34 7.65 -51.93 -0.40 -0.05 16 32 H 0.14 1.13 6.27 -52.49 -0.33 0.80 16 33 H 0.14 1.54 6.39 -52.48 -0.34 1.21 16 34 H 0.41 6.83 5.98 -40.82 -0.24 6.58 16 35 H 0.16 3.40 5.82 -52.49 -0.31 3.10 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 1.31 7.20 -51.93 -0.37 0.94 16 40 H 0.03 0.70 6.93 -51.93 -0.36 0.34 16 41 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 44 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 45 H 0.14 1.28 6.29 -52.48 -0.33 0.95 16 LS Contribution 377.06 15.07 5.68 5.68 Total: -1.00 -35.36 377.06 -6.97 -42.33 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.57 Total: 8.24 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.57 Total: -2.11 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.91 Total: -51.52 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.75 Total: -17.39 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.67 Total: 14.76 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.36 -6.97 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.658 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds