Wall clock time and date at job start Wed Apr 1 2020 04:19:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53002 * 109.47394 * 2 1
4 4 C 1.52995 * 110.65449 * 62.08906 * 3 2 1
5 5 N 1.47318 * 110.59750 * 299.17725 * 3 2 1
6 6 C 1.34526 * 106.61527 * 241.25053 * 5 3 2
7 7 O 1.21542 * 123.76570 * 180.21012 * 6 5 3
8 8 N 1.33790 * 112.46200 * 0.38432 * 6 5 3
9 9 C 1.46498 * 124.18087 * 179.86447 * 8 6 5
10 10 C 1.50701 * 109.47161 * 269.70143 * 9 8 6
11 11 O 1.21280 * 119.99924 * 359.97438 * 10 9 8
12 12 N 1.34774 * 120.00131 * 179.72442 * 10 9 8
13 13 C 1.39237 * 120.00317 * 175.98285 * 12 10 9
14 14 C 1.39476 * 119.83408 * 215.01492 * 13 12 10
15 15 C 1.36380 * 120.16585 * 179.71581 * 14 13 12
16 16 C 1.40869 * 119.82675 * 0.53577 * 15 14 13
17 17 C 1.41154 * 120.16259 * 179.72024 * 16 15 14
18 18 H 1.08000 * 120.00215 * 214.79765 * 17 16 15
19 19 C 1.39908 * 119.99907 * 34.79675 * 17 16 15
20 20 N 1.30872 * 120.00112 * 355.56147 * 19 17 16
21 21 Si 1.86804 * 119.99769 * 175.55886 * 19 17 16
22 22 H 1.48494 * 109.46883 * 60.00397 * 21 19 17
23 23 H 1.48501 * 109.46751 * 180.02562 * 21 19 17
24 24 H 1.48501 * 109.47246 * 300.00231 * 21 19 17
25 25 C 1.40867 * 119.67400 * 359.73897 * 16 15 14
26 26 C 1.36373 * 119.82831 * 359.97438 * 25 16 15
27 27 C 1.34771 * 111.64191 * 359.59644 * 8 6 5
28 28 O 1.21233 * 127.15336 * 180.19406 * 27 8 6
29 29 H 1.09006 * 109.46711 * 299.99914 * 1 2 3
30 30 H 1.09004 * 109.47474 * 59.99055 * 1 2 3
31 31 H 1.08994 * 109.47393 * 180.02562 * 1 2 3
32 32 H 1.09006 * 109.46711 * 240.00086 * 2 1 3
33 33 H 1.08995 * 109.47054 * 120.00560 * 2 1 3
34 34 H 1.09002 * 109.46906 * 182.20974 * 4 3 2
35 35 H 1.08997 * 109.47471 * 302.21378 * 4 3 2
36 36 H 1.09002 * 109.46760 * 62.21446 * 4 3 2
37 37 H 0.96999 * 126.68976 * 61.50700 * 5 3 2
38 38 H 1.08995 * 109.47214 * 149.70069 * 9 8 6
39 39 H 1.09006 * 109.46769 * 29.69593 * 9 8 6
40 40 H 0.97005 * 119.99807 * 355.97740 * 12 10 9
41 41 H 1.07996 * 119.91366 * 359.97438 * 14 13 12
42 42 H 1.07997 * 120.08579 * 180.25198 * 15 14 13
43 43 H 0.97001 * 119.99930 * 179.97438 * 20 19 17
44 44 H 1.08000 * 120.08688 * 179.97438 * 25 16 15
45 45 H 1.08005 * 119.91520 * 179.97438 * 26 25 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 1.5882 2.1747 1.2651
5 7 1.5790 2.1552 -1.2040
6 6 2.6827 2.5241 -1.8789
7 8 2.6597 3.1400 -2.9265
8 7 3.8084 2.1340 -1.2702
9 6 5.1552 2.3973 -1.7831
10 6 5.5851 1.2597 -2.6731
11 8 4.8400 0.3212 -2.8602
12 7 6.7954 1.2876 -3.2652
13 6 7.2267 0.1996 -4.0196
14 6 8.5762 -0.1527 -4.0206
15 6 9.0052 -1.2206 -4.7524
16 6 8.0831 -1.9614 -5.5176
17 6 8.5203 -3.0644 -6.2823
18 1 8.0539 -3.2820 -7.2318
19 6 9.5577 -3.8757 -5.8102
20 7 10.1811 -3.5627 -4.7029
21 14 10.0530 -5.4058 -6.7605
22 1 10.4920 -5.0201 -8.1257
23 1 11.1683 -6.0870 -6.0553
24 1 8.8920 -6.3269 -6.8556
25 6 6.7227 -1.5959 -5.5160
26 6 6.3078 -0.5292 -4.7746
27 6 3.5505 1.4740 -0.1238
28 8 4.3585 1.0030 0.6476
29 1 -0.3633 0.5139 0.8901
30 1 -0.3634 0.5140 -0.8899
31 1 -0.3634 -1.0276 0.0005
32 1 1.8933 -0.5139 -0.8901
33 1 1.8933 -0.5139 0.8899
34 1 1.9281 3.2097 1.2268
35 1 0.5004 2.1516 1.3293
36 1 2.0143 1.6844 2.1404
37 1 0.6591 2.3284 -1.4584
38 1 5.8504 2.4884 -0.9486
39 1 5.1510 3.3249 -2.3555
40 1 7.3661 2.0657 -3.1659
41 1 9.2826 0.4190 -3.4370
42 1 10.0497 -1.4948 -4.7491
43 1 10.9002 -4.1254 -4.3755
44 1 6.0101 -2.1589 -6.1005
45 1 5.2651 -0.2474 -4.7727
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000072707277.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:19:05
Heat of formation + Delta-G solvation = -52.515538 kcal
Electronic energy + Delta-G solvation = -30055.931266 eV
Core-core repulsion = 25846.285625 eV
Total energy + Delta-G solvation = -4209.645641 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.25 seconds
Orbital eigenvalues (eV)
-42.78614 -39.67740 -38.76528 -37.47078 -36.98089 -35.50711 -34.44863 -33.03397
-32.76125 -29.91087 -29.75068 -29.44695 -28.22656 -25.82501 -24.79639 -23.60432
-22.20225 -21.31751 -20.85816 -20.51869 -19.70840 -18.16215 -17.63721 -17.25724
-16.86750 -16.39338 -16.12589 -15.82267 -15.53722 -15.24478 -15.10780 -14.87760
-14.40394 -14.28617 -13.94161 -13.76062 -13.34434 -13.17447 -13.02673 -12.66654
-12.62693 -12.40745 -12.35734 -12.09519 -11.80539 -11.70634 -11.37664 -11.30641
-11.13974 -11.01387 -10.97138 -10.74097 -10.45282 -10.27181 -9.96786 -9.73130
-9.49203 -9.43970 -9.09915 -8.89034 -7.54859 -6.87842 -6.61765 -4.34524
1.47248 1.90714 2.49120 2.81369 2.87866 2.99473 3.08758 3.10069
3.12315 3.30284 3.61087 3.72654 3.98240 4.11607 4.31025 4.68225
4.74745 4.81430 4.90210 4.91901 5.00280 5.03817 5.08015 5.27748
5.32009 5.45120 5.48074 5.64879 5.65481 5.68916 5.86311 6.19016
6.43923 6.55093 6.72182 6.84598 6.89613 7.06115 7.18547 7.19957
7.29094 7.63567 7.71118 7.83819 7.95601 8.05651 8.22086 8.31110
8.59145 8.67985 8.92614 8.99069 10.29278
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.018244 B = 0.002390 C = 0.002302
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1534.345842 B =11715.016208 C =12160.187856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.121 4.121
3 C 0.124 3.876
4 C -0.148 4.148
5 N -0.719 5.719
6 C 0.710 3.290
7 O -0.540 6.540
8 N -0.559 5.559
9 C 0.100 3.900
10 C 0.486 3.514
11 O -0.521 6.521
12 N -0.644 5.644
13 C 0.002 3.998
14 C -0.118 4.118
15 C -0.142 4.142
16 C 0.101 3.899
17 C -0.461 4.461
18 H 0.076 0.924
19 C 0.069 3.931
20 N -0.811 5.811
21 Si 0.916 3.084
22 H -0.266 1.266
23 H -0.279 1.279
24 H -0.266 1.266
25 C -0.206 4.206
26 C -0.083 4.083
27 C 0.535 3.465
28 O -0.459 6.459
29 H 0.061 0.939
30 H 0.056 0.944
31 H 0.066 0.934
32 H 0.080 0.920
33 H 0.089 0.911
34 H 0.067 0.933
35 H 0.082 0.918
36 H 0.084 0.916
37 H 0.438 0.562
38 H 0.123 0.877
39 H 0.124 0.876
40 H 0.398 0.602
41 H 0.092 0.908
42 H 0.133 0.867
43 H 0.278 0.722
44 H 0.096 0.904
45 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.273 12.261 12.496 22.588
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.159 4.159
3 C 0.034 3.966
4 C -0.206 4.206
5 N -0.383 5.383
6 C 0.411 3.589
7 O -0.413 6.413
8 N -0.304 5.304
9 C -0.026 4.026
10 C 0.271 3.729
11 O -0.397 6.397
12 N -0.288 5.288
13 C -0.090 4.090
14 C -0.138 4.138
15 C -0.162 4.162
16 C 0.099 3.901
17 C -0.491 4.491
18 H 0.094 0.906
19 C -0.146 4.146
20 N -0.438 5.438
21 Si 0.741 3.259
22 H -0.190 1.190
23 H -0.204 1.204
24 H -0.191 1.191
25 C -0.226 4.226
26 C -0.103 4.103
27 C 0.321 3.679
28 O -0.327 6.327
29 H 0.080 0.920
30 H 0.075 0.925
31 H 0.085 0.915
32 H 0.099 0.901
33 H 0.108 0.892
34 H 0.086 0.914
35 H 0.100 0.900
36 H 0.103 0.897
37 H 0.283 0.717
38 H 0.141 0.859
39 H 0.142 0.858
40 H 0.231 0.769
41 H 0.110 0.890
42 H 0.150 0.850
43 H 0.089 0.911
44 H 0.114 0.886
45 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -14.073 11.584 12.375 22.031
hybrid contribution 0.242 -0.353 -0.399 0.585
sum -13.831 11.231 11.975 21.467
Atomic orbital electron populations
1.21782 0.94099 1.02870 1.02011 1.21752 0.97352 0.91958 1.04855
1.21479 0.91108 0.95904 0.88139 1.22042 1.03176 1.00547 0.94817
1.45592 1.08117 1.60216 1.24419 1.15750 0.80879 0.79260 0.83030
1.91020 1.85469 1.43796 1.21039 1.45802 1.07692 1.53366 1.23558
1.21481 0.81723 0.99347 1.00037 1.20595 0.82972 0.88042 0.81338
1.90704 1.52218 1.35209 1.61537 1.42846 1.17492 1.18931 1.49518
1.17241 0.93767 0.95145 1.02889 1.20309 0.92861 0.99009 1.01644
1.21195 1.00816 0.93735 1.00450 1.17726 0.90247 0.90991 0.91170
1.19473 1.14883 1.09273 1.05517 0.90628 1.25886 0.94523 0.99487
0.94664 1.69753 1.18686 1.36671 1.18734 0.86241 0.78622 0.80957
0.80075 1.19033 1.20418 1.19107 1.20801 0.95593 1.00747 1.05449
1.20385 0.97851 0.96368 0.95700 1.20764 0.90956 0.75993 0.80149
1.90806 1.53945 1.43118 1.44856 0.91955 0.92470 0.91542 0.90084
0.89227 0.91389 0.89961 0.89702 0.71734 0.85889 0.85759 0.76876
0.88964 0.84966 0.91064 0.88615 0.87607
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.86 9.48 37.16 0.35 -0.50 16
2 C -0.12 -1.03 5.28 -26.73 -0.14 -1.17 16
3 C 0.12 1.11 1.00 -132.09 -0.13 0.98 16
4 C -0.15 -0.85 8.73 37.16 0.32 -0.52 16
5 N -0.72 -6.65 5.51 -52.93 -0.29 -6.94 16
6 C 0.71 9.53 8.62 -88.02 -0.76 8.77 16
7 O -0.54 -8.97 17.48 5.33 0.09 -8.87 16
8 N -0.56 -7.49 2.09 -122.02 -0.26 -7.74 16
9 C 0.10 1.27 6.18 -5.19 -0.03 1.23 16
10 C 0.49 8.66 7.73 -10.99 -0.08 8.58 16
11 O -0.52 -11.53 13.85 5.56 0.08 -11.45 16
12 N -0.64 -11.33 5.30 -9.74 -0.05 -11.38 16
13 C 0.00 0.04 6.31 -83.57 -0.53 -0.49 16
14 C -0.12 -2.71 9.90 -39.79 -0.39 -3.10 16
15 C -0.14 -3.68 8.61 -39.26 -0.34 -4.02 16
16 C 0.10 2.75 5.55 -106.80 -0.59 2.16 16
17 C -0.46 -12.43 9.02 -37.85 -0.34 -12.77 16
18 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16
19 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16
20 N -0.81 -21.28 10.60 55.55 0.59 -20.69 16
21 Si 0.92 19.19 29.56 -169.99 -5.03 14.17 16
22 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16
23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16
24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16
25 C -0.21 -5.33 9.74 -39.26 -0.38 -5.71 16
26 C -0.08 -2.05 8.61 -39.79 -0.34 -2.39 16
27 C 0.54 6.87 6.98 -10.55 -0.07 6.80 16
28 O -0.46 -7.00 17.76 5.60 0.10 -6.90 16
29 H 0.06 0.25 6.53 -51.93 -0.34 -0.09 16
30 H 0.06 0.31 7.18 -51.93 -0.37 -0.07 16
31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16
35 H 0.08 0.30 6.49 -51.93 -0.34 -0.04 16
36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16
37 H 0.44 2.90 8.24 -40.82 -0.34 2.57 16
38 H 0.12 1.25 8.00 -51.93 -0.42 0.83 16
39 H 0.12 1.28 7.85 -51.93 -0.41 0.88 16
40 H 0.40 5.22 8.82 -40.82 -0.36 4.86 16
41 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16
42 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16
43 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16
44 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16
45 H 0.11 2.62 6.22 -52.48 -0.33 2.29 16
LS Contribution 379.10 15.07 5.71 5.71
Total: -1.00 -35.31 379.10 -8.34 -43.65
By element:
Atomic # 1 Polarization: 16.67 SS G_CDS: -5.72 Total: 10.95 kcal
Atomic # 6 Polarization: 3.07 SS G_CDS: -3.56 Total: -0.49 kcal
Atomic # 7 Polarization: -46.75 SS G_CDS: -0.01 Total: -46.76 kcal
Atomic # 8 Polarization: -27.49 SS G_CDS: 0.27 Total: -27.22 kcal
Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -35.31 -8.34 -43.65 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000072707277.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.867 kcal
(2) G-P(sol) polarization free energy of solvation -35.313 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.180 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.516 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.25 seconds