Wall clock time and date at job start Wed Apr 1 2020 02:55:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35909 * 116.99743 * 2 1
4 4 C 1.38504 * 119.95851 * 359.97438 * 3 2 1
5 5 C 1.39531 * 119.90616 * 180.02562 * 4 3 2
6 6 C 1.47839 * 120.08945 * 180.02562 * 5 4 3
7 7 O 1.21568 * 120.00461 * 359.97438 * 6 5 4
8 8 N 1.34784 * 119.99658 * 179.97438 * 6 5 4
9 9 C 1.40078 * 119.99904 * 179.97438 * 8 6 5
10 10 C 1.40422 * 125.97573 * 0.02562 * 9 8 6
11 11 C 1.35236 * 107.86524 * 179.77393 * 10 9 8
12 12 N 1.34966 * 107.86688 * 0.37122 * 11 10 9
13 13 C 1.46500 * 125.97782 * 179.89366 * 12 11 10
14 14 C 1.50706 * 109.47299 * 124.71059 * 13 12 11
15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12
16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12
17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13
18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13
19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14
20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14
21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14
22 22 N 1.31236 * 125.97602 * 180.02562 * 9 8 6
23 23 C 1.39516 * 119.81149 * 0.27528 * 5 4 3
24 24 C 1.38519 * 119.90595 * 359.47193 * 23 5 4
25 25 O 1.35907 * 119.95019 * 180.25724 * 24 23 5
26 26 C 1.42891 * 117.00390 * 0.26952 * 25 24 23
27 27 C 1.38726 * 120.09027 * 0.52508 * 24 23 5
28 28 C 1.50705 * 119.90475 * 179.70098 * 27 24 23
29 29 H 1.09004 * 109.47100 * 300.00191 * 1 2 3
30 30 H 1.08999 * 109.46766 * 59.99903 * 1 2 3
31 31 H 1.08993 * 109.47349 * 179.97438 * 1 2 3
32 32 H 1.08005 * 120.04512 * 0.02562 * 4 3 2
33 33 H 0.97001 * 119.99854 * 0.02562 * 8 6 5
34 34 H 1.08001 * 126.07062 * 0.02562 * 10 9 8
35 35 H 1.08006 * 126.07059 * 180.22404 * 11 10 9
36 36 H 1.09004 * 109.47078 * 4.71821 * 13 12 11
37 37 H 1.08993 * 109.47364 * 244.71592 * 13 12 11
38 38 H 0.97000 * 120.00236 * 0.27947 * 17 16 14
39 39 H 1.08003 * 120.04893 * 179.72191 * 23 5 4
40 40 H 1.09000 * 109.47503 * 300.00665 * 26 25 24
41 41 H 1.09000 * 109.47040 * 60.00979 * 26 25 24
42 42 H 1.09001 * 109.46959 * 180.02562 * 26 25 24
43 43 H 1.08999 * 109.47247 * 270.02654 * 28 27 24
44 44 H 1.08999 * 109.46845 * 30.02772 * 28 27 24
45 45 H 1.08994 * 109.47232 * 150.02421 * 28 27 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2110 0.0000
4 6 1.2907 2.3720 -0.0005
5 6 1.9253 3.6147 -0.0011
6 6 1.1231 4.8565 -0.0011
7 8 -0.0911 4.7959 -0.0011
8 7 1.7380 6.0559 -0.0011
9 6 0.9780 7.2326 -0.0016
10 6 -0.4242 7.3090 -0.0017
11 6 -0.7684 8.6168 0.0028
12 7 0.3684 9.3442 -0.0027
13 6 0.4543 10.8067 -0.0027
14 6 1.2973 11.2605 1.1612
15 1 1.7265 10.5322 1.8333
16 6 1.5207 12.6052 1.3679
17 7 1.0024 13.4917 0.5462
18 14 2.5662 13.1675 2.8101
19 1 2.6582 14.6497 2.8067
20 1 1.9438 12.7131 4.0796
21 1 3.9277 12.5868 2.6906
22 7 1.4518 8.4564 -0.0022
23 6 3.3188 3.6819 -0.0069
24 6 4.0665 2.5159 -0.0010
25 8 5.4240 2.5803 -0.0014
26 6 6.0117 3.8828 -0.0020
27 6 3.4315 1.2825 -0.0004
28 6 4.2491 0.0165 -0.0008
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 0.2122 2.3155 -0.0005
33 1 2.7068 6.1042 -0.0015
34 1 -1.1066 6.4719 -0.0009
35 1 -1.7745 9.0095 0.0073
36 1 -0.5464 11.2295 0.0869
37 1 0.9091 11.1439 -0.9341
38 1 0.4597 13.1998 -0.2029
39 1 3.8139 4.6417 -0.0119
40 1 5.6925 4.4251 -0.8920
41 1 5.6931 4.4255 0.8880
42 1 7.0979 3.7913 -0.0027
43 1 4.4459 -0.2886 -1.0286
44 1 5.1940 0.1941 0.5127
45 1 3.6989 -0.7716 0.5131
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000117716921.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:55:23
Heat of formation + Delta-G solvation = 0.817766 kcal
Electronic energy + Delta-G solvation = -29144.860017 eV
Core-core repulsion = 24937.527082 eV
Total energy + Delta-G solvation = -4207.332935 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.25578 -40.65789 -39.37236 -39.30174 -36.55834 -35.00632 -33.80650 -33.19794
-30.96581 -29.93353 -29.44462 -28.17020 -27.96706 -27.27143 -26.13050 -23.61669
-22.80236 -22.20675 -21.46607 -20.66226 -19.81915 -18.71952 -17.39564 -17.23324
-16.95779 -16.72893 -16.40092 -16.22912 -15.85084 -15.73327 -15.37142 -15.18612
-14.87625 -14.17914 -13.99759 -13.81668 -13.70477 -13.67313 -13.22946 -12.81266
-12.76683 -12.52449 -12.42542 -12.25342 -12.05580 -11.91378 -11.86195 -11.75985
-11.39649 -11.20601 -11.02985 -10.84720 -10.54271 -10.19052 -10.17749 -9.77231
-9.05065 -8.67214 -8.61575 -8.53918 -8.27530 -7.59244 -6.61659 -4.35964
0.44925 1.03014 2.34967 2.47482 2.61801 2.78830 3.27553 3.33878
3.35263 3.36536 3.55380 3.67606 3.72323 4.22504 4.37778 4.49439
4.55221 4.65983 4.78754 4.80614 4.86528 4.87105 4.89092 5.11953
5.15868 5.19960 5.27087 5.36025 5.39089 5.47328 5.54599 5.65267
5.85526 5.86021 5.98783 6.08383 6.11553 6.34376 6.45307 6.53670
6.70197 6.88753 6.97786 7.23450 7.39477 7.64808 7.77405 8.07083
8.29887 8.46996 8.57439 9.32238 10.75924
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.014920 B = 0.002307 C = 0.002060
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1876.218005 B =12135.154833 C =13589.919685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.308 6.308
3 C 0.155 3.845
4 C -0.177 4.177
5 C -0.054 4.054
6 C 0.565 3.435
7 O -0.510 6.510
8 N -0.623 5.623
9 C 0.257 3.743
10 C -0.284 4.284
11 C 0.052 3.948
12 N -0.316 5.316
13 C 0.249 3.751
14 C -0.608 4.608
15 H 0.063 0.937
16 C 0.023 3.977
17 N -0.904 5.904
18 Si 1.077 2.923
19 H -0.280 1.280
20 H -0.286 1.286
21 H -0.285 1.285
22 N -0.300 5.300
23 C -0.207 4.207
24 C 0.158 3.842
25 O -0.308 6.308
26 C 0.021 3.979
27 C -0.127 4.127
28 C -0.097 4.097
29 H 0.060 0.940
30 H 0.060 0.940
31 H 0.103 0.897
32 H 0.147 0.853
33 H 0.410 0.590
34 H 0.162 0.838
35 H 0.169 0.831
36 H 0.047 0.953
37 H 0.035 0.965
38 H 0.267 0.733
39 H 0.135 0.865
40 H 0.060 0.940
41 H 0.060 0.940
42 H 0.104 0.896
43 H 0.068 0.932
44 H 0.071 0.929
45 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.234 -26.458 -2.197 26.884
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.221 6.221
3 C 0.109 3.891
4 C -0.197 4.197
5 C -0.057 4.057
6 C 0.352 3.648
7 O -0.384 6.384
8 N -0.270 5.270
9 C 0.004 3.996
10 C -0.315 4.315
11 C -0.098 4.098
12 N -0.097 5.097
13 C 0.131 3.869
14 C -0.647 4.647
15 H 0.081 0.919
16 C -0.182 4.182
17 N -0.539 5.539
18 Si 0.903 3.097
19 H -0.205 1.205
20 H -0.212 1.212
21 H -0.211 1.211
22 N -0.131 5.131
23 C -0.227 4.227
24 C 0.113 3.887
25 O -0.221 6.221
26 C -0.073 4.073
27 C -0.128 4.128
28 C -0.153 4.153
29 H 0.079 0.921
30 H 0.079 0.921
31 H 0.121 0.879
32 H 0.164 0.836
33 H 0.246 0.754
34 H 0.179 0.821
35 H 0.186 0.814
36 H 0.065 0.935
37 H 0.053 0.947
38 H 0.077 0.923
39 H 0.153 0.847
40 H 0.079 0.921
41 H 0.079 0.921
42 H 0.123 0.877
43 H 0.087 0.913
44 H 0.089 0.911
45 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 5.249 -24.635 -1.458 25.231
hybrid contribution -1.162 -1.162 -0.780 1.819
sum 4.087 -25.798 -2.238 26.215
Atomic orbital electron populations
1.23165 0.77642 1.04215 1.02115 1.86054 1.21827 1.25885 1.88369
1.18222 0.90753 0.84345 0.95742 1.21195 1.01189 0.90270 1.07060
1.19235 0.92396 0.92666 1.01440 1.18094 0.87502 0.82470 0.76772
1.90710 1.13322 1.86546 1.47841 1.42294 1.09939 1.02677 1.72139
1.19053 0.90794 0.86098 1.03618 1.21535 0.93490 0.96757 1.19695
1.22576 0.93141 0.91665 1.02418 1.48807 1.01557 1.07478 1.51893
1.19781 0.98936 0.68893 0.99305 1.22093 1.35044 0.95135 1.12399
0.91852 1.25927 0.97751 0.92365 1.02129 1.70854 1.31526 1.36572
1.14969 0.83421 0.75690 0.76237 0.74305 1.20485 1.21217 1.21142
1.77352 1.11455 0.96492 1.27782 1.21293 0.93525 0.98099 1.09760
1.18193 0.82769 0.92288 0.95491 1.86060 1.16394 1.31321 1.88308
1.23195 0.99283 0.82851 1.02010 1.18503 0.90650 0.94419 1.09274
1.20463 0.99000 0.93400 1.02479 0.92127 0.92141 0.87907 0.83578
0.75399 0.82073 0.81368 0.93549 0.94713 0.92266 0.84702 0.92140
0.92092 0.87724 0.91293 0.91053 0.91077
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.15 9.81 101.05 0.99 1.14 16
2 O -0.31 -2.88 9.52 -19.46 -0.19 -3.07 16
3 C 0.16 1.65 6.65 -39.30 -0.26 1.39 16
4 C -0.18 -2.03 8.58 -39.00 -0.33 -2.36 16
5 C -0.05 -0.67 5.87 -105.01 -0.62 -1.28 16
6 C 0.57 8.60 7.74 -12.33 -0.10 8.51 16
7 O -0.51 -8.95 13.47 5.31 0.07 -8.88 16
8 N -0.62 -9.90 5.40 -11.99 -0.06 -9.96 16
9 C 0.26 5.18 8.11 -154.45 -1.25 3.92 16
10 C -0.28 -5.59 9.60 -39.83 -0.38 -5.98 16
11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16
12 N -0.32 -7.32 3.67 -62.56 -0.23 -7.55 16
13 C 0.25 6.24 5.57 -5.19 -0.03 6.21 16
14 C -0.61 -16.97 9.24 -34.44 -0.32 -17.29 16
15 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16
16 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16
17 N -0.90 -26.12 13.65 55.43 0.76 -25.36 16
18 Si 1.08 24.70 29.90 -169.99 -5.08 19.62 16
19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
20 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16
21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16
22 N -0.30 -6.89 12.42 31.43 0.39 -6.50 16
23 C -0.21 -2.20 8.52 -39.00 -0.33 -2.53 16
24 C 0.16 1.65 6.65 -39.30 -0.26 1.39 16
25 O -0.31 -2.87 9.52 -19.45 -0.19 -3.05 16
26 C 0.02 0.14 9.81 101.05 0.99 1.13 16
27 C -0.13 -1.32 5.91 -104.25 -0.62 -1.94 16
28 C -0.10 -0.82 9.56 36.01 0.34 -0.48 16
29 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16
30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16
31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16
32 H 0.15 1.59 5.87 -52.48 -0.31 1.28 16
33 H 0.41 5.34 6.85 -40.82 -0.28 5.06 16
34 H 0.16 3.05 5.91 -52.49 -0.31 2.74 16
35 H 0.17 2.70 8.06 -52.48 -0.42 2.28 16
36 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16
37 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16
38 H 0.27 7.54 7.22 -40.82 -0.29 7.25 16
39 H 0.14 1.19 4.62 -52.48 -0.24 0.94 16
40 H 0.06 0.36 7.64 -51.93 -0.40 -0.04 16
41 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16
42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16
43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
44 H 0.07 0.58 7.52 -51.93 -0.39 0.19 16
45 H 0.07 0.57 7.52 -51.93 -0.39 0.18 16
LS Contribution 379.75 15.07 5.72 5.72
Total: -1.00 -34.21 379.75 -6.80 -41.01
By element:
Atomic # 1 Polarization: 10.34 SS G_CDS: -5.53 Total: 4.81 kcal
Atomic # 6 Polarization: -4.33 SS G_CDS: -2.47 Total: -6.79 kcal
Atomic # 7 Polarization: -50.22 SS G_CDS: 0.85 Total: -49.37 kcal
Atomic # 8 Polarization: -14.70 SS G_CDS: -0.30 Total: -15.00 kcal
Atomic # 14 Polarization: 24.70 SS G_CDS: -5.08 Total: 19.62 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -34.21 -6.80 -41.01 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000117716921.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.832 kcal
(2) G-P(sol) polarization free energy of solvation -34.210 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.622 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.818 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds