Wall clock time and date at job start Wed Apr 1 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35909 * 116.99743 * 2 1 4 4 C 1.38504 * 119.95851 * 359.97438 * 3 2 1 5 5 C 1.39531 * 119.90616 * 180.02562 * 4 3 2 6 6 C 1.47839 * 120.08945 * 180.02562 * 5 4 3 7 7 O 1.21568 * 120.00461 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99658 * 179.97438 * 6 5 4 9 9 C 1.40078 * 119.99904 * 179.97438 * 8 6 5 10 10 C 1.40422 * 125.97573 * 0.02562 * 9 8 6 11 11 C 1.35236 * 107.86524 * 179.77393 * 10 9 8 12 12 N 1.34966 * 107.86688 * 0.37122 * 11 10 9 13 13 C 1.46500 * 125.97782 * 179.89366 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71059 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31236 * 125.97602 * 180.02562 * 9 8 6 23 23 C 1.39516 * 119.81149 * 0.27528 * 5 4 3 24 24 C 1.38519 * 119.90595 * 359.47193 * 23 5 4 25 25 O 1.35907 * 119.95019 * 180.25724 * 24 23 5 26 26 C 1.42891 * 117.00390 * 0.26952 * 25 24 23 27 27 C 1.38726 * 120.09027 * 0.52508 * 24 23 5 28 28 C 1.50705 * 119.90475 * 179.70098 * 27 24 23 29 29 H 1.09004 * 109.47100 * 300.00191 * 1 2 3 30 30 H 1.08999 * 109.46766 * 59.99903 * 1 2 3 31 31 H 1.08993 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.08005 * 120.04512 * 0.02562 * 4 3 2 33 33 H 0.97001 * 119.99854 * 0.02562 * 8 6 5 34 34 H 1.08001 * 126.07062 * 0.02562 * 10 9 8 35 35 H 1.08006 * 126.07059 * 180.22404 * 11 10 9 36 36 H 1.09004 * 109.47078 * 4.71821 * 13 12 11 37 37 H 1.08993 * 109.47364 * 244.71592 * 13 12 11 38 38 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 39 39 H 1.08003 * 120.04893 * 179.72191 * 23 5 4 40 40 H 1.09000 * 109.47503 * 300.00665 * 26 25 24 41 41 H 1.09000 * 109.47040 * 60.00979 * 26 25 24 42 42 H 1.09001 * 109.46959 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.47247 * 270.02654 * 28 27 24 44 44 H 1.08999 * 109.46845 * 30.02772 * 28 27 24 45 45 H 1.08994 * 109.47232 * 150.02421 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2907 2.3720 -0.0005 5 6 1.9253 3.6147 -0.0011 6 6 1.1231 4.8565 -0.0011 7 8 -0.0911 4.7959 -0.0011 8 7 1.7380 6.0559 -0.0011 9 6 0.9780 7.2326 -0.0016 10 6 -0.4242 7.3090 -0.0017 11 6 -0.7684 8.6168 0.0028 12 7 0.3684 9.3442 -0.0027 13 6 0.4543 10.8067 -0.0027 14 6 1.2973 11.2605 1.1612 15 1 1.7265 10.5322 1.8333 16 6 1.5207 12.6052 1.3679 17 7 1.0024 13.4917 0.5462 18 14 2.5662 13.1675 2.8101 19 1 2.6582 14.6497 2.8067 20 1 1.9438 12.7131 4.0796 21 1 3.9277 12.5868 2.6906 22 7 1.4518 8.4564 -0.0022 23 6 3.3188 3.6819 -0.0069 24 6 4.0665 2.5159 -0.0010 25 8 5.4240 2.5803 -0.0014 26 6 6.0117 3.8828 -0.0020 27 6 3.4315 1.2825 -0.0004 28 6 4.2491 0.0165 -0.0008 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2122 2.3155 -0.0005 33 1 2.7068 6.1042 -0.0015 34 1 -1.1066 6.4719 -0.0009 35 1 -1.7745 9.0095 0.0073 36 1 -0.5464 11.2295 0.0869 37 1 0.9091 11.1439 -0.9341 38 1 0.4597 13.1998 -0.2029 39 1 3.8139 4.6417 -0.0119 40 1 5.6925 4.4251 -0.8920 41 1 5.6931 4.4255 0.8880 42 1 7.0979 3.7913 -0.0027 43 1 4.4459 -0.2886 -1.0286 44 1 5.1940 0.1941 0.5127 45 1 3.6989 -0.7716 0.5131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117716921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:23 Heat of formation + Delta-G solvation = 0.817766 kcal Electronic energy + Delta-G solvation = -29144.860017 eV Core-core repulsion = 24937.527082 eV Total energy + Delta-G solvation = -4207.332935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.25578 -40.65789 -39.37236 -39.30174 -36.55834 -35.00632 -33.80650 -33.19794 -30.96581 -29.93353 -29.44462 -28.17020 -27.96706 -27.27143 -26.13050 -23.61669 -22.80236 -22.20675 -21.46607 -20.66226 -19.81915 -18.71952 -17.39564 -17.23324 -16.95779 -16.72893 -16.40092 -16.22912 -15.85084 -15.73327 -15.37142 -15.18612 -14.87625 -14.17914 -13.99759 -13.81668 -13.70477 -13.67313 -13.22946 -12.81266 -12.76683 -12.52449 -12.42542 -12.25342 -12.05580 -11.91378 -11.86195 -11.75985 -11.39649 -11.20601 -11.02985 -10.84720 -10.54271 -10.19052 -10.17749 -9.77231 -9.05065 -8.67214 -8.61575 -8.53918 -8.27530 -7.59244 -6.61659 -4.35964 0.44925 1.03014 2.34967 2.47482 2.61801 2.78830 3.27553 3.33878 3.35263 3.36536 3.55380 3.67606 3.72323 4.22504 4.37778 4.49439 4.55221 4.65983 4.78754 4.80614 4.86528 4.87105 4.89092 5.11953 5.15868 5.19960 5.27087 5.36025 5.39089 5.47328 5.54599 5.65267 5.85526 5.86021 5.98783 6.08383 6.11553 6.34376 6.45307 6.53670 6.70197 6.88753 6.97786 7.23450 7.39477 7.64808 7.77405 8.07083 8.29887 8.46996 8.57439 9.32238 10.75924 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.002307 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.218005 B =12135.154833 C =13589.919685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.155 3.845 4 C -0.177 4.177 5 C -0.054 4.054 6 C 0.565 3.435 7 O -0.510 6.510 8 N -0.623 5.623 9 C 0.257 3.743 10 C -0.284 4.284 11 C 0.052 3.948 12 N -0.316 5.316 13 C 0.249 3.751 14 C -0.608 4.608 15 H 0.063 0.937 16 C 0.023 3.977 17 N -0.904 5.904 18 Si 1.077 2.923 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.285 1.285 22 N -0.300 5.300 23 C -0.207 4.207 24 C 0.158 3.842 25 O -0.308 6.308 26 C 0.021 3.979 27 C -0.127 4.127 28 C -0.097 4.097 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.147 0.853 33 H 0.410 0.590 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.267 0.733 39 H 0.135 0.865 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -26.458 -2.197 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.109 3.891 4 C -0.197 4.197 5 C -0.057 4.057 6 C 0.352 3.648 7 O -0.384 6.384 8 N -0.270 5.270 9 C 0.004 3.996 10 C -0.315 4.315 11 C -0.098 4.098 12 N -0.097 5.097 13 C 0.131 3.869 14 C -0.647 4.647 15 H 0.081 0.919 16 C -0.182 4.182 17 N -0.539 5.539 18 Si 0.903 3.097 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.211 1.211 22 N -0.131 5.131 23 C -0.227 4.227 24 C 0.113 3.887 25 O -0.221 6.221 26 C -0.073 4.073 27 C -0.128 4.128 28 C -0.153 4.153 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.164 0.836 33 H 0.246 0.754 34 H 0.179 0.821 35 H 0.186 0.814 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.153 0.847 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.249 -24.635 -1.458 25.231 hybrid contribution -1.162 -1.162 -0.780 1.819 sum 4.087 -25.798 -2.238 26.215 Atomic orbital electron populations 1.23165 0.77642 1.04215 1.02115 1.86054 1.21827 1.25885 1.88369 1.18222 0.90753 0.84345 0.95742 1.21195 1.01189 0.90270 1.07060 1.19235 0.92396 0.92666 1.01440 1.18094 0.87502 0.82470 0.76772 1.90710 1.13322 1.86546 1.47841 1.42294 1.09939 1.02677 1.72139 1.19053 0.90794 0.86098 1.03618 1.21535 0.93490 0.96757 1.19695 1.22576 0.93141 0.91665 1.02418 1.48807 1.01557 1.07478 1.51893 1.19781 0.98936 0.68893 0.99305 1.22093 1.35044 0.95135 1.12399 0.91852 1.25927 0.97751 0.92365 1.02129 1.70854 1.31526 1.36572 1.14969 0.83421 0.75690 0.76237 0.74305 1.20485 1.21217 1.21142 1.77352 1.11455 0.96492 1.27782 1.21293 0.93525 0.98099 1.09760 1.18193 0.82769 0.92288 0.95491 1.86060 1.16394 1.31321 1.88308 1.23195 0.99283 0.82851 1.02010 1.18503 0.90650 0.94419 1.09274 1.20463 0.99000 0.93400 1.02479 0.92127 0.92141 0.87907 0.83578 0.75399 0.82073 0.81368 0.93549 0.94713 0.92266 0.84702 0.92140 0.92092 0.87724 0.91293 0.91053 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -2.88 9.52 -19.46 -0.19 -3.07 16 3 C 0.16 1.65 6.65 -39.30 -0.26 1.39 16 4 C -0.18 -2.03 8.58 -39.00 -0.33 -2.36 16 5 C -0.05 -0.67 5.87 -105.01 -0.62 -1.28 16 6 C 0.57 8.60 7.74 -12.33 -0.10 8.51 16 7 O -0.51 -8.95 13.47 5.31 0.07 -8.88 16 8 N -0.62 -9.90 5.40 -11.99 -0.06 -9.96 16 9 C 0.26 5.18 8.11 -154.45 -1.25 3.92 16 10 C -0.28 -5.59 9.60 -39.83 -0.38 -5.98 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 N -0.32 -7.32 3.67 -62.56 -0.23 -7.55 16 13 C 0.25 6.24 5.57 -5.19 -0.03 6.21 16 14 C -0.61 -16.97 9.24 -34.44 -0.32 -17.29 16 15 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 16 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 17 N -0.90 -26.12 13.65 55.43 0.76 -25.36 16 18 Si 1.08 24.70 29.90 -169.99 -5.08 19.62 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 22 N -0.30 -6.89 12.42 31.43 0.39 -6.50 16 23 C -0.21 -2.20 8.52 -39.00 -0.33 -2.53 16 24 C 0.16 1.65 6.65 -39.30 -0.26 1.39 16 25 O -0.31 -2.87 9.52 -19.45 -0.19 -3.05 16 26 C 0.02 0.14 9.81 101.05 0.99 1.13 16 27 C -0.13 -1.32 5.91 -104.25 -0.62 -1.94 16 28 C -0.10 -0.82 9.56 36.01 0.34 -0.48 16 29 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.15 1.59 5.87 -52.48 -0.31 1.28 16 33 H 0.41 5.34 6.85 -40.82 -0.28 5.06 16 34 H 0.16 3.05 5.91 -52.49 -0.31 2.74 16 35 H 0.17 2.70 8.06 -52.48 -0.42 2.28 16 36 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 37 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16 38 H 0.27 7.54 7.22 -40.82 -0.29 7.25 16 39 H 0.14 1.19 4.62 -52.48 -0.24 0.94 16 40 H 0.06 0.36 7.64 -51.93 -0.40 -0.04 16 41 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.58 7.52 -51.93 -0.39 0.19 16 45 H 0.07 0.57 7.52 -51.93 -0.39 0.18 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -34.21 379.75 -6.80 -41.01 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.53 Total: 4.81 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.47 Total: -6.79 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.85 Total: -49.37 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.30 Total: -15.00 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.08 Total: 19.62 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.21 -6.80 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117716921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.832 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds