Wall clock time and date at job start Wed Apr 1 2020 02:55:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35909 * 116.99743 * 2 1
4 4 C 1.38504 * 119.95851 * 359.97438 * 3 2 1
5 5 C 1.39531 * 119.90616 * 180.02562 * 4 3 2
6 6 C 1.47839 * 120.08945 * 180.02562 * 5 4 3
7 7 O 1.21568 * 120.00461 * 359.97438 * 6 5 4
8 8 N 1.34784 * 119.99658 * 179.97438 * 6 5 4
9 9 C 1.40078 * 119.99904 * 179.97438 * 8 6 5
10 10 C 1.40422 * 125.97573 * 0.02562 * 9 8 6
11 11 C 1.35236 * 107.86524 * 179.77393 * 10 9 8
12 12 N 1.34966 * 107.86688 * 0.37122 * 11 10 9
13 13 C 1.46500 * 125.97782 * 179.89366 * 12 11 10
14 14 C 1.50706 * 109.47299 * 124.71059 * 13 12 11
15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12
16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12
17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13
18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13
19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14
20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14
21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14
22 22 N 1.31236 * 125.97602 * 180.02562 * 9 8 6
23 23 C 1.39516 * 119.81149 * 0.27528 * 5 4 3
24 24 C 1.38519 * 119.90595 * 359.47193 * 23 5 4
25 25 O 1.35907 * 119.95019 * 180.25724 * 24 23 5
26 26 C 1.42891 * 117.00390 * 0.26952 * 25 24 23
27 27 C 1.38726 * 120.09027 * 0.52508 * 24 23 5
28 28 C 1.50705 * 119.90475 * 179.70098 * 27 24 23
29 29 H 1.09004 * 109.47100 * 300.00191 * 1 2 3
30 30 H 1.08999 * 109.46766 * 59.99903 * 1 2 3
31 31 H 1.08993 * 109.47349 * 179.97438 * 1 2 3
32 32 H 1.08005 * 120.04512 * 0.02562 * 4 3 2
33 33 H 0.97001 * 119.99854 * 0.02562 * 8 6 5
34 34 H 1.08001 * 126.07062 * 0.02562 * 10 9 8
35 35 H 1.08006 * 126.07059 * 180.22404 * 11 10 9
36 36 H 1.09004 * 109.47078 * 4.71821 * 13 12 11
37 37 H 1.08993 * 109.47364 * 244.71592 * 13 12 11
38 38 H 0.97000 * 120.00236 * 0.27947 * 17 16 14
39 39 H 1.08003 * 120.04893 * 179.72191 * 23 5 4
40 40 H 1.09000 * 109.47503 * 300.00665 * 26 25 24
41 41 H 1.09000 * 109.47040 * 60.00979 * 26 25 24
42 42 H 1.09001 * 109.46959 * 180.02562 * 26 25 24
43 43 H 1.08999 * 109.47247 * 270.02654 * 28 27 24
44 44 H 1.08999 * 109.46845 * 30.02772 * 28 27 24
45 45 H 1.08994 * 109.47232 * 150.02421 * 28 27 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2110 0.0000
4 6 1.2907 2.3720 -0.0005
5 6 1.9253 3.6147 -0.0011
6 6 1.1231 4.8565 -0.0011
7 8 -0.0911 4.7959 -0.0011
8 7 1.7380 6.0559 -0.0011
9 6 0.9780 7.2326 -0.0016
10 6 -0.4242 7.3090 -0.0017
11 6 -0.7684 8.6168 0.0028
12 7 0.3684 9.3442 -0.0027
13 6 0.4543 10.8067 -0.0027
14 6 1.2973 11.2605 1.1612
15 1 1.7265 10.5322 1.8333
16 6 1.5207 12.6052 1.3679
17 7 1.0024 13.4917 0.5462
18 14 2.5662 13.1675 2.8101
19 1 2.6582 14.6497 2.8067
20 1 1.9438 12.7131 4.0796
21 1 3.9277 12.5868 2.6906
22 7 1.4518 8.4564 -0.0022
23 6 3.3188 3.6819 -0.0069
24 6 4.0665 2.5159 -0.0010
25 8 5.4240 2.5803 -0.0014
26 6 6.0117 3.8828 -0.0020
27 6 3.4315 1.2825 -0.0004
28 6 4.2491 0.0165 -0.0008
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 0.2122 2.3155 -0.0005
33 1 2.7068 6.1042 -0.0015
34 1 -1.1066 6.4719 -0.0009
35 1 -1.7745 9.0095 0.0073
36 1 -0.5464 11.2295 0.0869
37 1 0.9091 11.1439 -0.9341
38 1 0.4597 13.1998 -0.2029
39 1 3.8139 4.6417 -0.0119
40 1 5.6925 4.4251 -0.8920
41 1 5.6931 4.4255 0.8880
42 1 7.0979 3.7913 -0.0027
43 1 4.4459 -0.2886 -1.0286
44 1 5.1940 0.1941 0.5127
45 1 3.6989 -0.7716 0.5131
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000117716921.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:55:22
Heat of formation + Delta-G solvation = -20.619581 kcal
Electronic energy + Delta-G solvation = -29145.789610 eV
Core-core repulsion = 24937.527082 eV
Total energy + Delta-G solvation = -4208.262528 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-42.47161 -41.83307 -40.54979 -40.06040 -37.35764 -36.53922 -35.63913 -34.11497
-32.68296 -31.10826 -30.70385 -28.93288 -28.74875 -28.18862 -27.60395 -25.25882
-24.14216 -23.02025 -22.66719 -22.08050 -21.16286 -19.77819 -19.24587 -18.45379
-18.08230 -17.50455 -17.37103 -17.11895 -16.86946 -16.59657 -16.49421 -16.47131
-15.91969 -15.80444 -15.58837 -15.15858 -14.93754 -14.35258 -14.33546 -14.18878
-13.99372 -13.75769 -13.52481 -13.37714 -13.24947 -13.06813 -12.64091 -12.62898
-12.47688 -12.43454 -12.17124 -12.11623 -11.96326 -11.76528 -11.73481 -11.13313
-11.03238 -10.70488 -9.90930 -9.48945 -9.33184 -9.24103 -8.79098 -6.57077
-0.49149 0.22068 0.91159 1.15790 1.42749 1.50818 1.56767 1.78397
1.85010 2.05808 2.16473 2.47998 2.60802 2.62842 3.00181 3.19554
3.69905 3.77021 3.79087 3.88368 4.00027 4.09586 4.27241 4.35032
4.38443 4.38971 4.45348 4.52598 4.63346 4.67196 4.73082 4.74656
4.77839 4.77888 4.79845 4.84349 4.92611 5.08956 5.12494 5.24292
5.41045 5.53227 5.73671 5.88753 6.06368 6.19477 6.24054 6.25441
6.39432 6.78957 6.90674 7.18452 8.57511
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.014920 B = 0.002307 C = 0.002060
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1876.218005 B =12135.154833 C =13589.919685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 O -0.314 6.314
3 C 0.154 3.846
4 C -0.181 4.181
5 C -0.068 4.068
6 C 0.569 3.431
7 O -0.535 6.535
8 N -0.618 5.618
9 C 0.265 3.735
10 C -0.290 4.290
11 C 0.058 3.942
12 N -0.341 5.341
13 C 0.259 3.741
14 C -0.622 4.622
15 H 0.045 0.955
16 C -0.019 4.019
17 N -0.923 5.923
18 Si 1.119 2.881
19 H -0.275 1.275
20 H -0.272 1.272
21 H -0.274 1.274
22 N -0.341 5.341
23 C -0.203 4.203
24 C 0.156 3.844
25 O -0.313 6.313
26 C 0.011 3.989
27 C -0.132 4.132
28 C -0.094 4.094
29 H 0.061 0.939
30 H 0.062 0.938
31 H 0.129 0.871
32 H 0.148 0.852
33 H 0.422 0.578
34 H 0.171 0.829
35 H 0.204 0.796
36 H 0.055 0.945
37 H 0.018 0.982
38 H 0.261 0.739
39 H 0.150 0.850
40 H 0.065 0.935
41 H 0.064 0.936
42 H 0.126 0.874
43 H 0.076 0.924
44 H 0.075 0.925
45 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.922 -28.049 -1.636 28.525
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.227 6.227
3 C 0.107 3.893
4 C -0.201 4.201
5 C -0.072 4.072
6 C 0.358 3.642
7 O -0.411 6.411
8 N -0.267 5.267
9 C 0.011 3.989
10 C -0.321 4.321
11 C -0.090 4.090
12 N -0.123 5.123
13 C 0.140 3.860
14 C -0.660 4.660
15 H 0.064 0.936
16 C -0.218 4.218
17 N -0.559 5.559
18 Si 0.940 3.060
19 H -0.200 1.200
20 H -0.197 1.197
21 H -0.200 1.200
22 N -0.171 5.171
23 C -0.223 4.223
24 C 0.109 3.891
25 O -0.226 6.226
26 C -0.083 4.083
27 C -0.134 4.134
28 C -0.151 4.151
29 H 0.080 0.920
30 H 0.080 0.920
31 H 0.147 0.853
32 H 0.165 0.835
33 H 0.261 0.739
34 H 0.188 0.812
35 H 0.221 0.779
36 H 0.073 0.927
37 H 0.036 0.964
38 H 0.071 0.929
39 H 0.167 0.833
40 H 0.084 0.916
41 H 0.083 0.917
42 H 0.144 0.856
43 H 0.095 0.905
44 H 0.094 0.906
45 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 5.942 -26.268 -0.912 26.947
hybrid contribution -1.381 -0.863 -1.000 1.911
sum 4.561 -27.131 -1.912 27.578
Atomic orbital electron populations
1.23420 0.76144 1.06028 1.02254 1.86057 1.23358 1.25146 1.88118
1.18262 0.90948 0.84518 0.95524 1.21253 1.01435 0.90319 1.07103
1.19010 0.92834 0.91417 1.03892 1.18545 0.87449 0.82795 0.75447
1.90679 1.14570 1.86880 1.48977 1.42376 1.10499 1.01685 1.72111
1.19375 0.91535 0.86512 1.01477 1.21748 0.93573 0.97002 1.19766
1.23204 0.93799 0.91522 1.00510 1.48606 1.02659 1.06889 1.54152
1.19451 0.98609 0.70484 0.97483 1.22275 1.35563 0.95106 1.13012
0.93628 1.27265 0.98139 0.92618 1.03810 1.70948 1.32491 1.36920
1.15507 0.82890 0.74887 0.76135 0.72108 1.20015 1.19689 1.19966
1.77271 1.12291 0.97502 1.30075 1.21400 0.92823 0.99056 1.08978
1.18263 0.83407 0.92145 0.95246 1.86066 1.15591 1.32906 1.88056
1.23468 1.00464 0.81903 1.02463 1.18849 0.90937 0.95309 1.08282
1.20490 0.98891 0.92594 1.03075 0.92025 0.91973 0.85318 0.83474
0.73931 0.81164 0.77904 0.92703 0.96425 0.92946 0.83289 0.91601
0.91702 0.85587 0.90512 0.90629 0.90632
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.18 9.81 113.37 1.11 1.29 16
2 O -0.31 -5.40 9.52 -92.53 -0.88 -6.28 16
3 C 0.15 3.08 6.65 22.45 0.15 3.23 16
4 C -0.18 -4.01 8.58 22.65 0.19 -3.82 16
5 C -0.07 -1.63 5.87 -20.12 -0.12 -1.75 16
6 C 0.57 17.03 7.74 86.78 0.67 17.71 16
7 O -0.53 -18.58 13.47 -3.93 -0.05 -18.63 16
8 N -0.62 -19.32 5.40 -310.12 -1.67 -20.99 16
9 C 0.27 10.63 8.11 133.35 1.08 11.71 16
10 C -0.29 -11.26 9.60 22.11 0.21 -11.05 16
11 C 0.06 2.25 11.43 83.52 0.96 3.21 16
12 N -0.34 -15.93 3.67 -351.84 -1.29 -17.22 16
13 C 0.26 13.19 5.57 85.64 0.48 13.67 16
14 C -0.62 -35.05 9.24 25.60 0.24 -34.82 16
15 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16
16 C -0.02 -1.03 5.46 84.65 0.46 -0.57 16
17 N -0.92 -53.54 13.65 21.45 0.29 -53.25 16
18 Si 1.12 49.20 29.90 68.60 2.05 51.25 16
19 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16
20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16
21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
22 N -0.34 -15.79 12.42 -54.48 -0.68 -16.47 16
23 C -0.20 -4.06 8.52 22.65 0.19 -3.87 16
24 C 0.16 3.01 6.65 22.45 0.15 3.16 16
25 O -0.31 -5.27 9.52 -92.50 -0.88 -6.15 16
26 C 0.01 0.12 9.81 113.37 1.11 1.24 16
27 C -0.13 -2.56 5.91 -19.63 -0.12 -2.68 16
28 C -0.09 -1.43 9.56 71.24 0.68 -0.75 16
29 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16
30 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16
31 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16
32 H 0.15 3.14 5.87 -2.91 -0.02 3.12 16
33 H 0.42 10.74 6.85 -92.71 -0.64 10.11 16
34 H 0.17 6.31 5.91 -2.91 -0.02 6.30 16
35 H 0.20 6.15 8.06 -2.91 -0.02 6.13 16
36 H 0.06 2.67 7.94 -2.39 -0.02 2.65 16
37 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16
38 H 0.26 14.96 7.22 -92.71 -0.67 14.29 16
39 H 0.15 2.42 4.62 -2.91 -0.01 2.40 16
40 H 0.07 0.66 7.64 -2.39 -0.02 0.65 16
41 H 0.06 0.67 7.67 -2.39 -0.02 0.66 16
42 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16
43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16
44 H 0.07 1.08 7.52 -2.39 -0.02 1.06 16
45 H 0.07 1.08 7.52 -2.39 -0.02 1.06 16
Total: -1.00 -73.18 379.75 4.86 -68.32
By element:
Atomic # 1 Polarization: 22.99 SS G_CDS: 0.52 Total: 23.50 kcal
Atomic # 6 Polarization: -11.54 SS G_CDS: 7.45 Total: -4.09 kcal
Atomic # 7 Polarization: -104.58 SS G_CDS: -3.35 Total: -107.92 kcal
Atomic # 8 Polarization: -29.24 SS G_CDS: -1.81 Total: -31.06 kcal
Atomic # 14 Polarization: 49.20 SS G_CDS: 2.05 Total: 51.25 kcal
Total: -73.18 4.86 -68.32 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000117716921.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.702 kcal
(2) G-P(sol) polarization free energy of solvation -73.179 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.478 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.620 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds