Wall clock time and date at job start Wed Apr 1 2020 02:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35909 * 116.99743 * 2 1 4 4 C 1.38504 * 119.95851 * 359.97438 * 3 2 1 5 5 C 1.39531 * 119.90616 * 180.02562 * 4 3 2 6 6 C 1.47839 * 120.08945 * 180.02562 * 5 4 3 7 7 O 1.21568 * 120.00461 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99658 * 179.97438 * 6 5 4 9 9 C 1.40078 * 119.99904 * 179.97438 * 8 6 5 10 10 C 1.40422 * 125.97573 * 0.02562 * 9 8 6 11 11 C 1.35236 * 107.86524 * 179.77393 * 10 9 8 12 12 N 1.34966 * 107.86688 * 0.37122 * 11 10 9 13 13 C 1.46500 * 125.97782 * 179.89366 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71059 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31236 * 125.97602 * 180.02562 * 9 8 6 23 23 C 1.39516 * 119.81149 * 0.27528 * 5 4 3 24 24 C 1.38519 * 119.90595 * 359.47193 * 23 5 4 25 25 O 1.35907 * 119.95019 * 180.25724 * 24 23 5 26 26 C 1.42891 * 117.00390 * 0.26952 * 25 24 23 27 27 C 1.38726 * 120.09027 * 0.52508 * 24 23 5 28 28 C 1.50705 * 119.90475 * 179.70098 * 27 24 23 29 29 H 1.09004 * 109.47100 * 300.00191 * 1 2 3 30 30 H 1.08999 * 109.46766 * 59.99903 * 1 2 3 31 31 H 1.08993 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.08005 * 120.04512 * 0.02562 * 4 3 2 33 33 H 0.97001 * 119.99854 * 0.02562 * 8 6 5 34 34 H 1.08001 * 126.07062 * 0.02562 * 10 9 8 35 35 H 1.08006 * 126.07059 * 180.22404 * 11 10 9 36 36 H 1.09004 * 109.47078 * 4.71821 * 13 12 11 37 37 H 1.08993 * 109.47364 * 244.71592 * 13 12 11 38 38 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 39 39 H 1.08003 * 120.04893 * 179.72191 * 23 5 4 40 40 H 1.09000 * 109.47503 * 300.00665 * 26 25 24 41 41 H 1.09000 * 109.47040 * 60.00979 * 26 25 24 42 42 H 1.09001 * 109.46959 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.47247 * 270.02654 * 28 27 24 44 44 H 1.08999 * 109.46845 * 30.02772 * 28 27 24 45 45 H 1.08994 * 109.47232 * 150.02421 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2907 2.3720 -0.0005 5 6 1.9253 3.6147 -0.0011 6 6 1.1231 4.8565 -0.0011 7 8 -0.0911 4.7959 -0.0011 8 7 1.7380 6.0559 -0.0011 9 6 0.9780 7.2326 -0.0016 10 6 -0.4242 7.3090 -0.0017 11 6 -0.7684 8.6168 0.0028 12 7 0.3684 9.3442 -0.0027 13 6 0.4543 10.8067 -0.0027 14 6 1.2973 11.2605 1.1612 15 1 1.7265 10.5322 1.8333 16 6 1.5207 12.6052 1.3679 17 7 1.0024 13.4917 0.5462 18 14 2.5662 13.1675 2.8101 19 1 2.6582 14.6497 2.8067 20 1 1.9438 12.7131 4.0796 21 1 3.9277 12.5868 2.6906 22 7 1.4518 8.4564 -0.0022 23 6 3.3188 3.6819 -0.0069 24 6 4.0665 2.5159 -0.0010 25 8 5.4240 2.5803 -0.0014 26 6 6.0117 3.8828 -0.0020 27 6 3.4315 1.2825 -0.0004 28 6 4.2491 0.0165 -0.0008 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2122 2.3155 -0.0005 33 1 2.7068 6.1042 -0.0015 34 1 -1.1066 6.4719 -0.0009 35 1 -1.7745 9.0095 0.0073 36 1 -0.5464 11.2295 0.0869 37 1 0.9091 11.1439 -0.9341 38 1 0.4597 13.1998 -0.2029 39 1 3.8139 4.6417 -0.0119 40 1 5.6925 4.4251 -0.8920 41 1 5.6931 4.4255 0.8880 42 1 7.0979 3.7913 -0.0027 43 1 4.4459 -0.2886 -1.0286 44 1 5.1940 0.1941 0.5127 45 1 3.6989 -0.7716 0.5131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117716921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:22 Heat of formation + Delta-G solvation = -20.619581 kcal Electronic energy + Delta-G solvation = -29145.789610 eV Core-core repulsion = 24937.527082 eV Total energy + Delta-G solvation = -4208.262528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.47161 -41.83307 -40.54979 -40.06040 -37.35764 -36.53922 -35.63913 -34.11497 -32.68296 -31.10826 -30.70385 -28.93288 -28.74875 -28.18862 -27.60395 -25.25882 -24.14216 -23.02025 -22.66719 -22.08050 -21.16286 -19.77819 -19.24587 -18.45379 -18.08230 -17.50455 -17.37103 -17.11895 -16.86946 -16.59657 -16.49421 -16.47131 -15.91969 -15.80444 -15.58837 -15.15858 -14.93754 -14.35258 -14.33546 -14.18878 -13.99372 -13.75769 -13.52481 -13.37714 -13.24947 -13.06813 -12.64091 -12.62898 -12.47688 -12.43454 -12.17124 -12.11623 -11.96326 -11.76528 -11.73481 -11.13313 -11.03238 -10.70488 -9.90930 -9.48945 -9.33184 -9.24103 -8.79098 -6.57077 -0.49149 0.22068 0.91159 1.15790 1.42749 1.50818 1.56767 1.78397 1.85010 2.05808 2.16473 2.47998 2.60802 2.62842 3.00181 3.19554 3.69905 3.77021 3.79087 3.88368 4.00027 4.09586 4.27241 4.35032 4.38443 4.38971 4.45348 4.52598 4.63346 4.67196 4.73082 4.74656 4.77839 4.77888 4.79845 4.84349 4.92611 5.08956 5.12494 5.24292 5.41045 5.53227 5.73671 5.88753 6.06368 6.19477 6.24054 6.25441 6.39432 6.78957 6.90674 7.18452 8.57511 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.002307 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.218005 B =12135.154833 C =13589.919685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.314 6.314 3 C 0.154 3.846 4 C -0.181 4.181 5 C -0.068 4.068 6 C 0.569 3.431 7 O -0.535 6.535 8 N -0.618 5.618 9 C 0.265 3.735 10 C -0.290 4.290 11 C 0.058 3.942 12 N -0.341 5.341 13 C 0.259 3.741 14 C -0.622 4.622 15 H 0.045 0.955 16 C -0.019 4.019 17 N -0.923 5.923 18 Si 1.119 2.881 19 H -0.275 1.275 20 H -0.272 1.272 21 H -0.274 1.274 22 N -0.341 5.341 23 C -0.203 4.203 24 C 0.156 3.844 25 O -0.313 6.313 26 C 0.011 3.989 27 C -0.132 4.132 28 C -0.094 4.094 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.129 0.871 32 H 0.148 0.852 33 H 0.422 0.578 34 H 0.171 0.829 35 H 0.204 0.796 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.261 0.739 39 H 0.150 0.850 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.126 0.874 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 -28.049 -1.636 28.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.227 6.227 3 C 0.107 3.893 4 C -0.201 4.201 5 C -0.072 4.072 6 C 0.358 3.642 7 O -0.411 6.411 8 N -0.267 5.267 9 C 0.011 3.989 10 C -0.321 4.321 11 C -0.090 4.090 12 N -0.123 5.123 13 C 0.140 3.860 14 C -0.660 4.660 15 H 0.064 0.936 16 C -0.218 4.218 17 N -0.559 5.559 18 Si 0.940 3.060 19 H -0.200 1.200 20 H -0.197 1.197 21 H -0.200 1.200 22 N -0.171 5.171 23 C -0.223 4.223 24 C 0.109 3.891 25 O -0.226 6.226 26 C -0.083 4.083 27 C -0.134 4.134 28 C -0.151 4.151 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.261 0.739 34 H 0.188 0.812 35 H 0.221 0.779 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.167 0.833 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.144 0.856 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.942 -26.268 -0.912 26.947 hybrid contribution -1.381 -0.863 -1.000 1.911 sum 4.561 -27.131 -1.912 27.578 Atomic orbital electron populations 1.23420 0.76144 1.06028 1.02254 1.86057 1.23358 1.25146 1.88118 1.18262 0.90948 0.84518 0.95524 1.21253 1.01435 0.90319 1.07103 1.19010 0.92834 0.91417 1.03892 1.18545 0.87449 0.82795 0.75447 1.90679 1.14570 1.86880 1.48977 1.42376 1.10499 1.01685 1.72111 1.19375 0.91535 0.86512 1.01477 1.21748 0.93573 0.97002 1.19766 1.23204 0.93799 0.91522 1.00510 1.48606 1.02659 1.06889 1.54152 1.19451 0.98609 0.70484 0.97483 1.22275 1.35563 0.95106 1.13012 0.93628 1.27265 0.98139 0.92618 1.03810 1.70948 1.32491 1.36920 1.15507 0.82890 0.74887 0.76135 0.72108 1.20015 1.19689 1.19966 1.77271 1.12291 0.97502 1.30075 1.21400 0.92823 0.99056 1.08978 1.18263 0.83407 0.92145 0.95246 1.86066 1.15591 1.32906 1.88056 1.23468 1.00464 0.81903 1.02463 1.18849 0.90937 0.95309 1.08282 1.20490 0.98891 0.92594 1.03075 0.92025 0.91973 0.85318 0.83474 0.73931 0.81164 0.77904 0.92703 0.96425 0.92946 0.83289 0.91601 0.91702 0.85587 0.90512 0.90629 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.31 -5.40 9.52 -92.53 -0.88 -6.28 16 3 C 0.15 3.08 6.65 22.45 0.15 3.23 16 4 C -0.18 -4.01 8.58 22.65 0.19 -3.82 16 5 C -0.07 -1.63 5.87 -20.12 -0.12 -1.75 16 6 C 0.57 17.03 7.74 86.78 0.67 17.71 16 7 O -0.53 -18.58 13.47 -3.93 -0.05 -18.63 16 8 N -0.62 -19.32 5.40 -310.12 -1.67 -20.99 16 9 C 0.27 10.63 8.11 133.35 1.08 11.71 16 10 C -0.29 -11.26 9.60 22.11 0.21 -11.05 16 11 C 0.06 2.25 11.43 83.52 0.96 3.21 16 12 N -0.34 -15.93 3.67 -351.84 -1.29 -17.22 16 13 C 0.26 13.19 5.57 85.64 0.48 13.67 16 14 C -0.62 -35.05 9.24 25.60 0.24 -34.82 16 15 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 16 C -0.02 -1.03 5.46 84.65 0.46 -0.57 16 17 N -0.92 -53.54 13.65 21.45 0.29 -53.25 16 18 Si 1.12 49.20 29.90 68.60 2.05 51.25 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 N -0.34 -15.79 12.42 -54.48 -0.68 -16.47 16 23 C -0.20 -4.06 8.52 22.65 0.19 -3.87 16 24 C 0.16 3.01 6.65 22.45 0.15 3.16 16 25 O -0.31 -5.27 9.52 -92.50 -0.88 -6.15 16 26 C 0.01 0.12 9.81 113.37 1.11 1.24 16 27 C -0.13 -2.56 5.91 -19.63 -0.12 -2.68 16 28 C -0.09 -1.43 9.56 71.24 0.68 -0.75 16 29 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 30 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 31 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.15 3.14 5.87 -2.91 -0.02 3.12 16 33 H 0.42 10.74 6.85 -92.71 -0.64 10.11 16 34 H 0.17 6.31 5.91 -2.91 -0.02 6.30 16 35 H 0.20 6.15 8.06 -2.91 -0.02 6.13 16 36 H 0.06 2.67 7.94 -2.39 -0.02 2.65 16 37 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 38 H 0.26 14.96 7.22 -92.71 -0.67 14.29 16 39 H 0.15 2.42 4.62 -2.91 -0.01 2.40 16 40 H 0.07 0.66 7.64 -2.39 -0.02 0.65 16 41 H 0.06 0.67 7.67 -2.39 -0.02 0.66 16 42 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.08 7.52 -2.39 -0.02 1.06 16 45 H 0.07 1.08 7.52 -2.39 -0.02 1.06 16 Total: -1.00 -73.18 379.75 4.86 -68.32 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.52 Total: 23.50 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 7.45 Total: -4.09 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -3.35 Total: -107.92 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.81 Total: -31.06 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.05 Total: 51.25 kcal Total: -73.18 4.86 -68.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117716921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.702 kcal (2) G-P(sol) polarization free energy of solvation -73.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds