Wall clock time and date at job start Wed Apr 1 2020 04:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99741 * 2 1 4 4 O 1.20818 * 120.00514 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99541 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.46925 * 180.02562 * 5 3 2 7 7 C 1.36892 * 119.99980 * 269.99635 * 6 5 3 8 8 H 1.08008 * 120.00010 * 138.68714 * 7 6 5 9 9 C 1.39018 * 120.00425 * 318.69195 * 7 6 5 10 10 N 1.31381 * 120.00191 * 162.14244 * 9 7 6 11 11 Si 1.86797 * 119.99659 * 342.14769 * 9 7 6 12 12 H 1.48505 * 109.47335 * 95.25990 * 11 9 7 13 13 H 1.48501 * 109.46955 * 215.25960 * 11 9 7 14 14 H 1.48496 * 109.47196 * 335.25899 * 11 9 7 15 15 C 1.34783 * 119.99885 * 89.99973 * 6 5 3 16 16 O 1.21634 * 120.00193 * 3.32482 * 15 6 5 17 17 C 1.47403 * 119.99724 * 183.32122 * 15 6 5 18 18 C 1.39873 * 120.06978 * 147.61360 * 17 15 6 19 19 C 1.37103 * 119.92781 * 180.02562 * 18 17 15 20 20 C 1.39283 * 120.07132 * 359.97438 * 19 18 17 21 21 N 1.38989 * 119.92783 * 180.02562 * 20 19 18 22 22 C 1.47240 * 125.65102 * 180.02562 * 21 20 19 23 23 C 1.54222 * 103.25082 * 179.70853 * 22 21 20 24 24 C 1.51208 * 103.80335 * 0.37790 * 23 22 21 25 25 C 1.50701 * 125.11954 * 179.86939 * 24 23 22 26 26 N 1.26981 * 109.76179 * 359.59171 * 24 23 22 27 27 C 1.39285 * 120.14383 * 0.27264 * 20 19 18 28 28 C 1.37108 * 120.06637 * 359.44767 * 27 20 19 29 29 H 1.08991 * 109.47354 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47316 * 299.99963 * 1 2 3 31 31 H 1.09005 * 109.47016 * 60.00035 * 1 2 3 32 32 H 1.08994 * 109.47251 * 60.00440 * 5 3 2 33 33 H 1.09005 * 109.47190 * 299.99786 * 5 3 2 34 34 H 0.97005 * 119.99972 * 180.02562 * 10 9 7 35 35 H 1.07998 * 120.03686 * 359.97438 * 18 17 15 36 36 H 1.08004 * 119.95992 * 179.97438 * 19 18 17 37 37 H 1.08996 * 110.65809 * 298.39882 * 22 21 20 38 38 H 1.08993 * 110.66348 * 61.52079 * 22 21 20 39 39 H 1.08997 * 110.67660 * 241.73326 * 23 22 21 40 40 H 1.09007 * 110.43708 * 118.88988 * 23 22 21 41 41 H 1.08998 * 109.46889 * 179.71514 * 25 24 23 42 42 H 1.08991 * 109.47608 * 59.70790 * 25 24 23 43 43 H 1.09006 * 109.46446 * 299.70777 * 25 24 23 44 44 H 1.07995 * 119.96747 * 179.71245 * 27 20 19 45 45 H 1.07998 * 120.03128 * 180.27608 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1763 3.3364 -1.1842 8 1 3.8332 4.3539 -1.3005 9 6 4.8153 2.6936 -2.2383 10 7 4.6998 3.1619 -3.4603 11 14 5.8382 1.1639 -1.9170 12 1 5.0092 -0.0450 -2.1554 13 1 7.0083 1.1499 -2.8313 14 1 6.3101 1.1707 -0.5091 15 6 4.1723 3.3257 1.1686 16 8 4.0585 2.7264 2.2209 17 6 4.5188 4.7584 1.1701 18 6 4.0818 5.5840 2.2112 19 6 4.4053 6.9164 2.2094 20 6 5.1687 7.4478 1.1726 21 7 5.4954 8.7987 1.1741 22 6 6.2914 9.4903 0.1464 23 6 6.3283 10.9478 0.6493 24 6 5.5377 10.9051 1.9375 25 6 5.2754 12.0882 2.8333 26 7 5.1232 9.7234 2.1479 27 6 5.6011 6.6294 0.1318 28 6 5.2858 5.2951 0.1307 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9564 0.7806 -0.8891 33 1 3.9557 0.7809 0.8909 34 1 5.1454 2.7131 -4.1959 35 1 3.4895 5.1727 3.0151 36 1 4.0679 7.5544 3.0128 37 1 7.2967 9.0723 0.0929 38 1 5.7984 9.4347 -0.8240 39 1 5.8531 11.6150 -0.0697 40 1 7.3554 11.2585 0.8407 41 1 4.6768 11.7715 3.6874 42 1 4.7363 12.8538 2.2756 43 1 6.2237 12.4947 3.1851 44 1 6.1889 7.0454 -0.6730 45 1 5.6251 4.6602 -0.6743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120515352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:24 Heat of formation + Delta-G solvation = -9.052108 kcal Electronic energy + Delta-G solvation = -30046.820127 eV Core-core repulsion = 25839.059202 eV Total energy + Delta-G solvation = -4207.760925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.29703 -40.01916 -39.09570 -37.56550 -35.89142 -34.94687 -33.58083 -32.11186 -31.20886 -30.32302 -30.19187 -28.80186 -27.34294 -26.34831 -25.08076 -23.60459 -22.26030 -21.51013 -20.66285 -19.43772 -19.07563 -17.95340 -17.32996 -17.21839 -16.65849 -16.21544 -15.86349 -15.52421 -15.34490 -14.81370 -14.61597 -14.18760 -13.94062 -13.64929 -13.51854 -13.39207 -13.15657 -13.06915 -12.93526 -12.81976 -12.75625 -12.50783 -12.44079 -11.95243 -11.85830 -11.79960 -11.64022 -11.49635 -11.39853 -11.05592 -10.65881 -10.49253 -10.33649 -10.18126 -10.08964 -9.86636 -9.35697 -9.17168 -8.77244 -8.40658 -7.94892 -7.01589 -6.57893 -4.22353 1.50136 2.07806 2.28459 2.59760 2.85430 2.94931 3.03877 3.15275 3.19169 3.78201 3.98112 4.11039 4.25035 4.25922 4.52342 4.62822 4.78492 4.90441 5.25193 5.30531 5.32032 5.37506 5.39098 5.45501 5.45679 5.46302 5.50921 5.59488 5.66189 5.71619 5.78022 5.79893 5.94754 5.96345 6.08166 6.12933 6.43966 6.72186 6.85168 6.87297 6.98189 7.10177 7.24197 7.32883 7.69011 7.91528 8.02168 8.16491 8.40134 8.79124 9.15691 9.48612 10.50058 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.002987 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.389827 B = 9372.588128 C =10458.134053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.448 3.552 4 O -0.487 6.487 5 C 0.108 3.892 6 N -0.448 5.448 7 C -0.341 4.341 8 H 0.114 0.886 9 C 0.064 3.936 10 N -0.851 5.851 11 Si 0.860 3.140 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.253 1.253 15 C 0.545 3.455 16 O -0.589 6.589 17 C -0.146 4.146 18 C -0.035 4.035 19 C -0.182 4.182 20 C 0.235 3.765 21 N -0.474 5.474 22 C 0.082 3.918 23 C -0.131 4.131 24 C 0.049 3.951 25 C -0.072 4.072 26 N -0.229 5.229 27 C -0.197 4.197 28 C -0.020 4.020 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.278 0.722 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 10.269 4.990 11.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.288 3.712 4 O -0.372 6.372 5 C -0.017 4.017 6 N -0.168 5.168 7 C -0.468 4.468 8 H 0.132 0.868 9 C -0.144 4.144 10 N -0.485 5.485 11 Si 0.686 3.314 12 H -0.195 1.195 13 H -0.206 1.206 14 H -0.177 1.177 15 C 0.337 3.663 16 O -0.474 6.474 17 C -0.150 4.150 18 C -0.055 4.055 19 C -0.204 4.204 20 C 0.138 3.862 21 N -0.275 5.275 22 C -0.042 4.042 23 C -0.171 4.171 24 C -0.146 4.146 25 C -0.131 4.131 26 N -0.033 5.033 27 C -0.219 4.219 28 C -0.039 4.039 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.138 0.862 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.854 9.584 5.828 11.369 hybrid contribution 0.606 -0.306 -1.026 1.230 sum 2.459 9.278 4.802 10.732 Atomic orbital electron populations 1.23135 0.77558 1.02816 1.02262 1.86522 1.22661 1.34528 1.84959 1.24740 0.92833 0.81223 0.72365 1.90625 1.66556 1.36217 1.43775 1.21369 0.86867 0.88525 1.04957 1.43217 1.58681 1.08351 1.06579 1.19226 1.38146 1.01248 0.88186 0.86839 1.25391 0.96312 0.97997 0.94703 1.69717 1.39478 1.40641 0.98688 0.87139 0.81096 0.82922 0.80231 1.19501 1.20586 1.17676 1.18189 0.78075 0.87108 0.82957 1.90641 1.56397 1.68601 1.31711 1.19595 1.04457 0.93606 0.97383 1.20813 0.96173 0.92012 0.96488 1.20314 1.04620 0.95465 0.99997 1.17492 0.94861 0.78769 0.95126 1.47984 1.54115 1.05059 1.20295 1.22658 0.97039 0.91303 0.93246 1.22261 1.01927 0.96805 0.96062 1.24957 0.98953 0.93664 0.96988 1.20238 1.02814 0.92334 0.97699 1.73722 1.15486 1.00470 1.13605 1.20474 1.07928 0.94334 0.99194 1.22029 0.91742 0.93863 0.96256 0.88729 0.92336 0.92203 0.87805 0.86776 0.91178 0.85688 0.85680 0.90213 0.90161 0.88678 0.88749 0.90449 0.90210 0.90232 0.86228 0.81283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.97 10.57 -39.26 -0.41 -7.39 16 3 C 0.45 10.03 8.02 36.01 0.29 10.31 16 4 O -0.49 -12.25 16.18 -18.74 -0.30 -12.55 16 5 C 0.11 2.42 4.79 -5.19 -0.02 2.40 16 6 N -0.45 -10.98 1.61 -117.32 -0.19 -11.17 16 7 C -0.34 -8.67 6.54 -15.00 -0.10 -8.77 16 8 H 0.11 3.11 6.47 -52.48 -0.34 2.77 16 9 C 0.06 1.60 5.30 -17.46 -0.09 1.51 16 10 N -0.85 -22.29 13.96 55.50 0.77 -21.52 16 11 Si 0.86 18.79 24.91 -169.99 -4.23 14.56 16 12 H -0.27 -5.63 6.74 56.52 0.38 -5.24 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.25 -5.52 7.11 56.52 0.40 -5.12 16 15 C 0.54 13.41 7.39 -12.53 -0.09 13.31 16 16 O -0.59 -15.25 16.32 5.25 0.09 -15.17 16 17 C -0.15 -3.25 5.52 -104.94 -0.58 -3.83 16 18 C -0.04 -0.71 9.57 -39.38 -0.38 -1.09 16 19 C -0.18 -3.37 9.60 -39.61 -0.38 -3.75 16 20 C 0.23 4.20 6.71 -83.84 -0.56 3.64 16 21 N -0.47 -7.36 4.07 -57.47 -0.23 -7.59 16 22 C 0.08 0.95 6.55 -3.00 -0.02 0.93 16 23 C -0.13 -1.12 6.97 -26.99 -0.19 -1.31 16 24 C 0.05 0.52 7.43 -79.08 -0.59 -0.07 16 25 C -0.07 -0.47 10.48 36.01 0.38 -0.09 16 26 N -0.23 -3.32 11.18 34.79 0.39 -2.93 16 27 C -0.20 -3.58 9.45 -39.60 -0.37 -3.95 16 28 C -0.02 -0.42 7.72 -39.38 -0.30 -0.72 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.10 2.27 3.43 -51.93 -0.18 2.09 16 33 H 0.11 2.38 7.38 -51.93 -0.38 2.00 16 34 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.13 2.45 7.96 -52.49 -0.42 2.03 16 36 H 0.13 2.16 7.65 -52.48 -0.40 1.76 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.12 1.91 7.28 -52.49 -0.38 1.52 16 45 H 0.17 3.73 5.41 -52.49 -0.28 3.45 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -32.93 377.61 -6.15 -39.08 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.77 Total: 8.87 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -1.95 Total: 10.12 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.74 Total: -43.21 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.63 Total: -35.10 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.23 Total: 14.56 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.93 -6.15 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120515352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.023 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds