Wall clock time and date at job start Wed Apr 1 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99741 * 2 1 4 4 O 1.20818 * 120.00514 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99541 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.46925 * 180.02562 * 5 3 2 7 7 C 1.36892 * 119.99980 * 269.99635 * 6 5 3 8 8 H 1.08008 * 120.00010 * 138.68714 * 7 6 5 9 9 C 1.39018 * 120.00425 * 318.69195 * 7 6 5 10 10 N 1.31381 * 120.00191 * 162.14244 * 9 7 6 11 11 Si 1.86797 * 119.99659 * 342.14769 * 9 7 6 12 12 H 1.48505 * 109.47335 * 95.25990 * 11 9 7 13 13 H 1.48501 * 109.46955 * 215.25960 * 11 9 7 14 14 H 1.48496 * 109.47196 * 335.25899 * 11 9 7 15 15 C 1.34783 * 119.99885 * 89.99973 * 6 5 3 16 16 O 1.21634 * 120.00193 * 3.32482 * 15 6 5 17 17 C 1.47403 * 119.99724 * 183.32122 * 15 6 5 18 18 C 1.39873 * 120.06978 * 147.61360 * 17 15 6 19 19 C 1.37103 * 119.92781 * 180.02562 * 18 17 15 20 20 C 1.39283 * 120.07132 * 359.97438 * 19 18 17 21 21 N 1.38989 * 119.92783 * 180.02562 * 20 19 18 22 22 C 1.47240 * 125.65102 * 180.02562 * 21 20 19 23 23 C 1.54222 * 103.25082 * 179.70853 * 22 21 20 24 24 C 1.51208 * 103.80335 * 0.37790 * 23 22 21 25 25 C 1.50701 * 125.11954 * 179.86939 * 24 23 22 26 26 N 1.26981 * 109.76179 * 359.59171 * 24 23 22 27 27 C 1.39285 * 120.14383 * 0.27264 * 20 19 18 28 28 C 1.37108 * 120.06637 * 359.44767 * 27 20 19 29 29 H 1.08991 * 109.47354 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47316 * 299.99963 * 1 2 3 31 31 H 1.09005 * 109.47016 * 60.00035 * 1 2 3 32 32 H 1.08994 * 109.47251 * 60.00440 * 5 3 2 33 33 H 1.09005 * 109.47190 * 299.99786 * 5 3 2 34 34 H 0.97005 * 119.99972 * 180.02562 * 10 9 7 35 35 H 1.07998 * 120.03686 * 359.97438 * 18 17 15 36 36 H 1.08004 * 119.95992 * 179.97438 * 19 18 17 37 37 H 1.08996 * 110.65809 * 298.39882 * 22 21 20 38 38 H 1.08993 * 110.66348 * 61.52079 * 22 21 20 39 39 H 1.08997 * 110.67660 * 241.73326 * 23 22 21 40 40 H 1.09007 * 110.43708 * 118.88988 * 23 22 21 41 41 H 1.08998 * 109.46889 * 179.71514 * 25 24 23 42 42 H 1.08991 * 109.47608 * 59.70790 * 25 24 23 43 43 H 1.09006 * 109.46446 * 299.70777 * 25 24 23 44 44 H 1.07995 * 119.96747 * 179.71245 * 27 20 19 45 45 H 1.07998 * 120.03128 * 180.27608 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1763 3.3364 -1.1842 8 1 3.8332 4.3539 -1.3005 9 6 4.8153 2.6936 -2.2383 10 7 4.6998 3.1619 -3.4603 11 14 5.8382 1.1639 -1.9170 12 1 5.0092 -0.0450 -2.1554 13 1 7.0083 1.1499 -2.8313 14 1 6.3101 1.1707 -0.5091 15 6 4.1723 3.3257 1.1686 16 8 4.0585 2.7264 2.2209 17 6 4.5188 4.7584 1.1701 18 6 4.0818 5.5840 2.2112 19 6 4.4053 6.9164 2.2094 20 6 5.1687 7.4478 1.1726 21 7 5.4954 8.7987 1.1741 22 6 6.2914 9.4903 0.1464 23 6 6.3283 10.9478 0.6493 24 6 5.5377 10.9051 1.9375 25 6 5.2754 12.0882 2.8333 26 7 5.1232 9.7234 2.1479 27 6 5.6011 6.6294 0.1318 28 6 5.2858 5.2951 0.1307 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9564 0.7806 -0.8891 33 1 3.9557 0.7809 0.8909 34 1 5.1454 2.7131 -4.1959 35 1 3.4895 5.1727 3.0151 36 1 4.0679 7.5544 3.0128 37 1 7.2967 9.0723 0.0929 38 1 5.7984 9.4347 -0.8240 39 1 5.8531 11.6150 -0.0697 40 1 7.3554 11.2585 0.8407 41 1 4.6768 11.7715 3.6874 42 1 4.7363 12.8538 2.2756 43 1 6.2237 12.4947 3.1851 44 1 6.1889 7.0454 -0.6730 45 1 5.6251 4.6602 -0.6743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120515352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:22 Heat of formation + Delta-G solvation = -29.196592 kcal Electronic energy + Delta-G solvation = -30047.693657 eV Core-core repulsion = 25839.059202 eV Total energy + Delta-G solvation = -4208.634455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.85446 -41.30981 -40.68172 -39.08174 -37.59762 -36.83209 -34.73677 -34.04780 -32.41626 -31.60287 -31.36630 -30.22328 -28.47613 -27.78028 -26.88898 -24.75992 -23.69294 -22.94395 -22.18707 -21.11961 -20.19232 -19.69637 -18.99477 -18.51327 -18.38399 -17.47519 -17.18752 -17.09208 -17.06776 -16.36844 -16.07612 -15.62856 -15.33507 -15.01364 -14.87640 -14.69980 -14.48593 -14.40904 -14.31797 -14.19291 -14.03712 -13.98362 -13.51875 -13.42050 -13.14594 -13.00685 -12.88118 -12.77226 -12.70344 -12.41689 -12.32828 -12.00388 -11.89667 -11.84140 -11.66484 -11.20944 -11.13564 -10.67501 -10.43086 -10.01429 -9.80098 -8.51149 -8.29071 -6.19421 0.06415 0.55799 1.09758 1.19631 1.25362 1.36645 1.44184 1.49719 1.52745 2.06772 2.15640 2.48630 2.81171 3.12845 3.24316 3.50142 3.76994 3.82657 3.92030 4.02419 4.04605 4.06027 4.11913 4.24091 4.28738 4.29330 4.46888 4.52533 4.61288 4.62572 4.65886 4.76792 4.81200 4.88787 4.93989 5.08023 5.18560 5.20740 5.28020 5.33131 5.42751 5.62327 5.68698 5.83626 6.01029 6.15954 6.37380 6.69425 6.86078 7.01797 7.22750 7.58698 8.60680 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.002987 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.389827 B = 9372.588128 C =10458.134053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.451 3.549 4 O -0.524 6.524 5 C 0.100 3.900 6 N -0.455 5.455 7 C -0.339 4.339 8 H 0.083 0.917 9 C 0.033 3.967 10 N -0.887 5.887 11 Si 0.909 3.091 12 H -0.248 1.248 13 H -0.272 1.272 14 H -0.255 1.255 15 C 0.537 3.463 16 O -0.612 6.612 17 C -0.185 4.185 18 C -0.036 4.036 19 C -0.187 4.187 20 C 0.250 3.750 21 N -0.488 5.488 22 C 0.068 3.932 23 C -0.126 4.126 24 C 0.080 3.920 25 C -0.074 4.074 26 N -0.290 5.290 27 C -0.200 4.200 28 C -0.021 4.021 29 H 0.143 0.857 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.284 0.716 35 H 0.123 0.877 36 H 0.136 0.864 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.141 0.859 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.549 11.866 5.147 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.293 3.707 4 O -0.412 6.412 5 C -0.025 4.025 6 N -0.175 5.175 7 C -0.467 4.467 8 H 0.100 0.900 9 C -0.172 4.172 10 N -0.522 5.522 11 Si 0.732 3.268 12 H -0.174 1.174 13 H -0.197 1.197 14 H -0.179 1.179 15 C 0.330 3.670 16 O -0.499 6.499 17 C -0.190 4.190 18 C -0.056 4.056 19 C -0.209 4.209 20 C 0.149 3.851 21 N -0.285 5.285 22 C -0.055 4.055 23 C -0.166 4.166 24 C -0.115 4.115 25 C -0.133 4.133 26 N -0.093 5.093 27 C -0.222 4.222 28 C -0.040 4.040 29 H 0.161 0.839 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.130 0.870 33 H 0.146 0.854 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.158 0.842 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.795 11.200 5.975 12.998 hybrid contribution 0.278 -0.497 -1.028 1.176 sum 3.073 10.702 4.947 12.184 Atomic orbital electron populations 1.23569 0.74850 1.05942 1.02179 1.86489 1.25167 1.32244 1.84083 1.24629 0.92859 0.81659 0.71550 1.90609 1.67290 1.37611 1.45694 1.21498 0.87492 0.87575 1.05937 1.43247 1.58947 1.09130 1.06177 1.18916 1.38560 1.00485 0.88702 0.89979 1.25868 0.96648 1.00635 0.94077 1.69779 1.40566 1.42376 0.99505 0.86358 0.80059 0.80384 0.79994 1.17380 1.19733 1.17900 1.18629 0.77530 0.88097 0.82697 1.90589 1.57695 1.69348 1.32229 1.19574 1.07211 0.92911 0.99283 1.20829 0.96145 0.92689 0.95917 1.20379 1.04986 0.94759 1.00729 1.17517 0.93057 0.80435 0.94045 1.48133 1.54331 1.04448 1.21628 1.22980 0.96861 0.93078 0.92617 1.22408 1.03653 0.95098 0.95397 1.25920 0.95230 0.93280 0.97030 1.20499 1.04540 0.91133 0.97100 1.73841 1.19012 1.01818 1.14658 1.20543 1.08281 0.93353 1.00061 1.21789 0.92001 0.94853 0.95393 0.83950 0.92342 0.92497 0.87047 0.85373 0.90611 0.85886 0.84650 0.89468 0.90156 0.86094 0.85764 0.91176 0.87656 0.87466 0.84163 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.96 16 2 O -0.36 -13.36 10.57 -51.41 -0.54 -13.91 16 3 C 0.45 20.42 8.02 71.24 0.57 20.99 16 4 O -0.52 -27.17 16.18 21.99 0.36 -26.81 16 5 C 0.10 4.52 4.79 85.63 0.41 4.93 16 6 N -0.45 -23.15 1.61 -643.34 -1.03 -24.18 16 7 C -0.34 -18.04 6.54 84.09 0.55 -17.49 16 8 H 0.08 4.82 6.47 -2.91 -0.02 4.80 16 9 C 0.03 1.70 5.30 84.95 0.45 2.15 16 10 N -0.89 -47.50 13.96 21.68 0.30 -47.19 16 11 Si 0.91 38.59 24.91 68.60 1.71 40.30 16 12 H -0.25 -9.72 6.74 99.48 0.67 -9.05 16 13 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 14 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 15 C 0.54 27.74 7.39 86.66 0.64 28.38 16 16 O -0.61 -32.98 16.32 -4.14 -0.07 -33.04 16 17 C -0.19 -8.73 5.52 -20.07 -0.11 -8.84 16 18 C -0.04 -1.53 9.57 22.40 0.21 -1.32 16 19 C -0.19 -7.10 9.60 22.25 0.21 -6.88 16 20 C 0.25 9.06 6.71 38.51 0.26 9.32 16 21 N -0.49 -14.68 4.07 -335.73 -1.37 -16.04 16 22 C 0.07 1.43 6.55 86.65 0.57 2.00 16 23 C -0.13 -1.66 6.97 30.42 0.21 -1.45 16 24 C 0.08 1.41 7.43 46.84 0.35 1.75 16 25 C -0.07 -0.66 10.48 71.24 0.75 0.08 16 26 N -0.29 -7.94 11.18 -41.37 -0.46 -8.41 16 27 C -0.20 -7.46 9.45 22.26 0.21 -7.25 16 28 C -0.02 -0.93 7.72 22.40 0.17 -0.76 16 29 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 31 H 0.06 1.63 8.13 -2.38 -0.02 1.61 16 32 H 0.11 4.82 3.43 -2.39 -0.01 4.81 16 33 H 0.13 5.38 7.38 -2.38 -0.02 5.37 16 34 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 35 H 0.12 5.12 7.96 -2.91 -0.02 5.09 16 36 H 0.14 4.78 7.65 -2.91 -0.02 4.75 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.14 4.50 7.28 -2.91 -0.02 4.48 16 45 H 0.15 7.11 5.41 -2.91 -0.02 7.09 16 Total: -1.00 -75.49 377.61 6.54 -68.95 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.99 Total: 32.77 kcal Atomic # 6 Polarization: 20.91 SS G_CDS: 6.65 Total: 27.56 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -2.56 Total: -95.83 kcal Atomic # 8 Polarization: -73.50 SS G_CDS: -0.25 Total: -73.76 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 1.71 Total: 40.30 kcal Total: -75.49 6.54 -68.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120515352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.752 kcal (2) G-P(sol) polarization free energy of solvation -75.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds