Wall clock time and date at job start Wed Apr 1 2020 04:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46977 * 2 1 4 4 N 1.29909 * 124.85167 * 90.00501 * 3 2 1 5 5 C 1.36077 * 108.80711 * 179.97438 * 4 3 2 6 6 C 1.39527 * 133.73362 * 179.97438 * 5 4 3 7 7 C 1.38354 * 119.66319 * 180.02562 * 6 5 4 8 8 N 1.39867 * 119.86913 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00217 * 144.29354 * 8 7 6 10 10 O 1.21379 * 119.99968 * 5.10677 * 9 8 7 11 11 C 1.49341 * 120.00122 * 185.11202 * 9 8 7 12 12 O 1.21366 * 119.99686 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00096 * 180.02562 * 11 9 8 14 14 C 1.46502 * 119.99920 * 180.02562 * 13 11 9 15 15 H 1.08997 * 109.47656 * 34.98907 * 14 13 11 16 16 C 1.50700 * 109.47014 * 154.99521 * 14 13 11 17 17 H 1.07997 * 120.00225 * 4.91144 * 16 14 13 18 18 C 1.37880 * 119.99962 * 184.91162 * 16 14 13 19 19 N 1.31517 * 119.99895 * 6.40853 * 18 16 14 20 20 Si 1.86798 * 120.00131 * 186.41148 * 18 16 14 21 21 H 1.48501 * 109.47125 * 94.99523 * 20 18 16 22 22 H 1.48501 * 109.47068 * 214.99054 * 20 18 16 23 23 H 1.48494 * 109.47040 * 334.99150 * 20 18 16 24 24 C 1.53007 * 109.46744 * 274.99230 * 14 13 11 25 25 C 1.53002 * 109.46892 * 65.25312 * 24 14 13 26 26 C 1.39355 * 120.26109 * 359.97438 * 7 6 5 27 27 C 1.37791 * 120.40336 * 0.02562 * 26 7 6 28 28 C 1.38708 * 119.97553 * 0.02562 * 27 26 7 29 29 O 1.34219 * 124.84749 * 269.97342 * 3 2 1 30 30 H 1.09001 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47326 * 300.00271 * 1 2 3 32 32 H 1.09003 * 109.46867 * 59.99971 * 1 2 3 33 33 H 1.09000 * 109.46911 * 240.00063 * 2 1 3 34 34 H 1.08997 * 109.47279 * 120.00155 * 2 1 3 35 35 H 1.07995 * 120.16870 * 359.72679 * 6 5 4 36 36 H 0.97003 * 119.99896 * 324.30027 * 8 7 6 37 37 H 0.96991 * 120.00094 * 359.97438 * 13 11 9 38 38 H 0.96996 * 120.00286 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.46891 * 185.25198 * 24 14 13 40 40 H 1.08999 * 109.46912 * 305.25015 * 24 14 13 41 41 H 1.09000 * 109.46666 * 180.02562 * 25 24 14 42 42 H 1.09000 * 109.47260 * 299.99660 * 25 24 14 43 43 H 1.08996 * 109.46899 * 59.99858 * 25 24 14 44 44 H 1.08007 * 119.79549 * 180.02562 * 26 7 6 45 45 H 1.08002 * 120.00648 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2798 2.1207 1.0661 5 6 2.7162 3.3535 0.6900 6 6 3.1179 4.4903 1.3923 7 6 3.5170 5.6186 0.6981 8 7 3.9200 6.7606 1.3978 9 6 4.9149 7.5308 0.9147 10 8 5.3983 7.2870 -0.1717 11 6 5.4227 8.6842 1.7160 12 8 4.9391 8.9282 2.8021 13 7 6.4172 9.4547 1.2327 14 6 6.9157 10.5858 2.0190 15 1 6.8846 10.3334 3.0789 16 6 8.3357 10.8905 1.6166 17 1 8.7919 10.3538 0.7979 18 6 9.0524 11.8543 2.2935 19 7 8.5445 12.4184 3.3675 20 14 10.7449 12.3591 1.6852 21 1 10.6225 13.5614 0.8222 22 1 11.6159 12.6704 2.8470 23 1 11.3418 11.2469 0.9030 24 6 6.0382 11.8124 1.7610 25 6 4.6266 11.5498 2.2896 26 6 3.5190 5.6216 -0.6954 27 6 3.1236 4.5028 -1.3958 28 6 2.7199 3.3647 -0.7133 29 8 2.2884 2.1437 -1.1015 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.1128 4.4910 2.4722 36 1 3.4836 6.9983 2.2308 37 1 6.8034 9.2600 0.3645 38 1 9.0488 13.0962 3.8440 39 1 6.4625 12.6767 2.2720 40 1 5.9944 12.0090 0.6898 41 1 4.0013 12.4234 2.1053 42 1 4.2022 10.6855 1.7786 43 1 4.6705 11.3532 3.3607 44 1 3.8323 6.5064 -1.2297 45 1 3.1280 4.5121 -2.4758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128159484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:18 Heat of formation + Delta-G solvation = -35.619157 kcal Electronic energy + Delta-G solvation = -29006.763364 eV Core-core repulsion = 24797.850405 eV Total energy + Delta-G solvation = -4208.912959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.48913 -40.81272 -38.93321 -37.66764 -35.52311 -35.34374 -34.72401 -33.60585 -32.44036 -31.12514 -30.42872 -29.12306 -27.32297 -25.43658 -24.80215 -23.27664 -22.65588 -22.42246 -21.54108 -20.47199 -19.57797 -18.89261 -18.42128 -17.48586 -17.05766 -16.58583 -16.34055 -15.90774 -15.60055 -15.25501 -15.04762 -14.63189 -14.42193 -14.29046 -14.23525 -13.89961 -13.45856 -13.31384 -13.24229 -12.80642 -12.74553 -12.28343 -12.17775 -12.02740 -11.68192 -11.62194 -11.57222 -11.45737 -11.29597 -11.04261 -10.85797 -10.78560 -10.45142 -10.39920 -10.30265 -9.80099 -9.21027 -9.16397 -8.71073 -8.59778 -8.39556 -8.10699 -6.22244 -4.29428 0.41740 0.81084 1.74859 2.14774 2.18042 2.51211 3.21791 3.29453 3.31915 3.33624 3.46380 3.63790 3.97991 4.23955 4.30317 4.46296 4.58197 4.63399 4.76315 4.92277 4.98047 5.02965 5.08520 5.11519 5.24375 5.28534 5.46043 5.61747 5.72718 5.87593 5.88158 5.98226 6.03416 6.23632 6.26564 6.45846 6.48216 6.86499 6.91048 7.05461 7.08563 7.19627 7.33776 7.40581 7.59625 7.66619 7.79731 7.94627 8.37481 8.57470 8.81591 9.36747 10.85510 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.001908 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.749292 B =14673.455937 C =15030.804722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.032 4.032 3 C 0.248 3.752 4 N -0.478 5.478 5 C 0.040 3.960 6 C -0.090 4.090 7 C 0.154 3.846 8 N -0.650 5.650 9 C 0.510 3.490 10 O -0.505 6.505 11 C 0.495 3.505 12 O -0.527 6.527 13 N -0.666 5.666 14 C 0.266 3.734 15 H 0.061 0.939 16 C -0.539 4.539 17 H 0.065 0.935 18 C 0.070 3.930 19 N -0.880 5.880 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.122 4.122 25 C -0.140 4.140 26 C -0.090 4.090 27 C -0.074 4.074 28 C -0.006 4.006 29 O -0.214 6.214 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.143 0.857 36 H 0.426 0.574 37 H 0.402 0.598 38 H 0.266 0.734 39 H 0.088 0.912 40 H 0.037 0.963 41 H 0.027 0.973 42 H 0.037 0.963 43 H 0.053 0.947 44 H 0.159 0.841 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 -20.020 -7.817 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.070 4.070 3 C 0.036 3.964 4 N -0.207 5.207 5 C -0.072 4.072 6 C -0.111 4.111 7 C 0.058 3.942 8 N -0.298 5.298 9 C 0.293 3.707 10 O -0.378 6.378 11 C 0.273 3.727 12 O -0.405 6.405 13 N -0.314 5.314 14 C 0.165 3.835 15 H 0.079 0.921 16 C -0.578 4.578 17 H 0.083 0.917 18 C -0.134 4.134 19 N -0.517 5.517 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.161 4.161 25 C -0.197 4.197 26 C -0.109 4.109 27 C -0.094 4.094 28 C -0.056 4.056 29 O -0.105 6.105 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.128 0.872 35 H 0.160 0.840 36 H 0.264 0.736 37 H 0.236 0.764 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.177 0.823 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.130 -19.960 -7.023 26.013 hybrid contribution 1.006 0.576 -0.931 1.487 sum -14.124 -19.385 -7.954 25.269 Atomic orbital electron populations 1.21793 0.92647 1.03259 1.03209 1.20225 0.97191 0.83944 1.05679 1.26480 0.95127 0.96387 0.78370 1.70609 1.18217 1.02981 1.28937 1.19410 1.03604 0.93176 0.90998 1.19898 1.02310 0.88540 1.00399 1.17416 0.98915 0.86590 0.91230 1.43200 1.35678 1.23610 1.27263 1.21081 0.79166 0.83899 0.86535 1.90720 1.56763 1.69909 1.20419 1.19510 0.82982 0.83463 0.86696 1.90760 1.58050 1.70906 1.20800 1.46460 1.32927 1.29470 1.22583 1.19050 0.91955 0.79839 0.92655 0.92119 1.21175 0.96667 1.21851 1.18060 0.91734 1.24879 0.98381 0.95904 0.94281 1.69955 1.38445 1.26711 1.16545 0.86427 0.83235 0.79004 0.78453 1.20467 1.21063 1.19724 1.21886 0.93527 1.01646 0.99062 1.21864 0.97714 0.98643 1.01520 1.21240 0.98260 0.99024 0.92415 1.19754 1.00649 0.88521 1.00432 1.20330 1.04425 0.86365 0.94459 1.84483 1.68034 1.21920 1.36090 0.90590 0.91558 0.91976 0.88425 0.87167 0.83965 0.73550 0.76366 0.92434 0.89370 0.94381 0.95374 0.94405 0.92757 0.82316 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.89 37.16 0.37 -0.30 16 2 C -0.03 -0.17 6.56 -27.88 -0.18 -0.36 16 3 C 0.25 2.52 7.49 -13.09 -0.10 2.42 16 4 N -0.48 -6.00 11.34 -8.71 -0.10 -6.10 16 5 C 0.04 0.52 7.23 -84.71 -0.61 -0.09 16 6 C -0.09 -1.10 10.01 -39.06 -0.39 -1.49 16 7 C 0.15 1.95 6.28 -83.73 -0.53 1.42 16 8 N -0.65 -8.50 5.31 -10.30 -0.05 -8.55 16 9 C 0.51 8.11 7.73 -11.64 -0.09 8.02 16 10 O -0.50 -8.51 13.91 5.47 0.08 -8.43 16 11 C 0.50 9.28 6.47 -11.64 -0.08 9.20 16 12 O -0.53 -10.75 13.62 5.48 0.07 -10.68 16 13 N -0.67 -13.49 5.02 -55.40 -0.28 -13.77 16 14 C 0.27 6.37 2.11 -69.08 -0.15 6.22 16 15 H 0.06 1.67 7.56 -51.93 -0.39 1.27 16 16 C -0.54 -13.82 8.67 -34.44 -0.30 -14.12 16 17 H 0.06 1.61 7.73 -52.49 -0.41 1.20 16 18 C 0.07 1.82 5.21 -17.82 -0.09 1.73 16 19 N -0.88 -23.95 11.97 55.43 0.66 -23.29 16 20 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C -0.12 -2.78 5.49 -26.73 -0.15 -2.93 16 25 C -0.14 -2.87 8.52 37.16 0.32 -2.55 16 26 C -0.09 -1.09 8.67 -39.33 -0.34 -1.43 16 27 C -0.07 -0.82 10.05 -39.57 -0.40 -1.22 16 28 C -0.01 -0.07 7.43 -38.62 -0.29 -0.36 16 29 O -0.21 -2.44 10.78 3.42 0.04 -2.40 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.43 4.92 8.30 -40.82 -0.34 4.58 16 37 H 0.40 7.61 7.99 -40.82 -0.33 7.28 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.09 2.21 6.62 -51.93 -0.34 1.87 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.04 0.74 5.64 -51.93 -0.29 0.45 16 43 H 0.05 1.18 7.86 -51.93 -0.41 0.77 16 44 H 0.16 1.98 6.23 -52.48 -0.33 1.65 16 45 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -30.41 379.97 -7.65 -38.07 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.77 Total: 10.05 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -3.00 Total: 4.17 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.23 Total: -51.70 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.19 Total: -21.51 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.41 -7.65 -38.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128159484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.447 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds