Wall clock time and date at job start Wed Apr 1 2020 04:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46977 * 2 1 4 4 N 1.29909 * 124.85167 * 90.00501 * 3 2 1 5 5 C 1.36077 * 108.80711 * 179.97438 * 4 3 2 6 6 C 1.39527 * 133.73362 * 179.97438 * 5 4 3 7 7 C 1.38354 * 119.66319 * 180.02562 * 6 5 4 8 8 N 1.39867 * 119.86913 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00217 * 144.29354 * 8 7 6 10 10 O 1.21379 * 119.99968 * 5.10677 * 9 8 7 11 11 C 1.49341 * 120.00122 * 185.11202 * 9 8 7 12 12 O 1.21366 * 119.99686 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00096 * 180.02562 * 11 9 8 14 14 C 1.46502 * 119.99920 * 180.02562 * 13 11 9 15 15 H 1.08997 * 109.47656 * 34.98907 * 14 13 11 16 16 C 1.50700 * 109.47014 * 154.99521 * 14 13 11 17 17 H 1.07997 * 120.00225 * 4.91144 * 16 14 13 18 18 C 1.37880 * 119.99962 * 184.91162 * 16 14 13 19 19 N 1.31517 * 119.99895 * 6.40853 * 18 16 14 20 20 Si 1.86798 * 120.00131 * 186.41148 * 18 16 14 21 21 H 1.48501 * 109.47125 * 94.99523 * 20 18 16 22 22 H 1.48501 * 109.47068 * 214.99054 * 20 18 16 23 23 H 1.48494 * 109.47040 * 334.99150 * 20 18 16 24 24 C 1.53007 * 109.46744 * 274.99230 * 14 13 11 25 25 C 1.53002 * 109.46892 * 65.25312 * 24 14 13 26 26 C 1.39355 * 120.26109 * 359.97438 * 7 6 5 27 27 C 1.37791 * 120.40336 * 0.02562 * 26 7 6 28 28 C 1.38708 * 119.97553 * 0.02562 * 27 26 7 29 29 O 1.34219 * 124.84749 * 269.97342 * 3 2 1 30 30 H 1.09001 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47326 * 300.00271 * 1 2 3 32 32 H 1.09003 * 109.46867 * 59.99971 * 1 2 3 33 33 H 1.09000 * 109.46911 * 240.00063 * 2 1 3 34 34 H 1.08997 * 109.47279 * 120.00155 * 2 1 3 35 35 H 1.07995 * 120.16870 * 359.72679 * 6 5 4 36 36 H 0.97003 * 119.99896 * 324.30027 * 8 7 6 37 37 H 0.96991 * 120.00094 * 359.97438 * 13 11 9 38 38 H 0.96996 * 120.00286 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.46891 * 185.25198 * 24 14 13 40 40 H 1.08999 * 109.46912 * 305.25015 * 24 14 13 41 41 H 1.09000 * 109.46666 * 180.02562 * 25 24 14 42 42 H 1.09000 * 109.47260 * 299.99660 * 25 24 14 43 43 H 1.08996 * 109.46899 * 59.99858 * 25 24 14 44 44 H 1.08007 * 119.79549 * 180.02562 * 26 7 6 45 45 H 1.08002 * 120.00648 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2798 2.1207 1.0661 5 6 2.7162 3.3535 0.6900 6 6 3.1179 4.4903 1.3923 7 6 3.5170 5.6186 0.6981 8 7 3.9200 6.7606 1.3978 9 6 4.9149 7.5308 0.9147 10 8 5.3983 7.2870 -0.1717 11 6 5.4227 8.6842 1.7160 12 8 4.9391 8.9282 2.8021 13 7 6.4172 9.4547 1.2327 14 6 6.9157 10.5858 2.0190 15 1 6.8846 10.3334 3.0789 16 6 8.3357 10.8905 1.6166 17 1 8.7919 10.3538 0.7979 18 6 9.0524 11.8543 2.2935 19 7 8.5445 12.4184 3.3675 20 14 10.7449 12.3591 1.6852 21 1 10.6225 13.5614 0.8222 22 1 11.6159 12.6704 2.8470 23 1 11.3418 11.2469 0.9030 24 6 6.0382 11.8124 1.7610 25 6 4.6266 11.5498 2.2896 26 6 3.5190 5.6216 -0.6954 27 6 3.1236 4.5028 -1.3958 28 6 2.7199 3.3647 -0.7133 29 8 2.2884 2.1437 -1.1015 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.1128 4.4910 2.4722 36 1 3.4836 6.9983 2.2308 37 1 6.8034 9.2600 0.3645 38 1 9.0488 13.0962 3.8440 39 1 6.4625 12.6767 2.2720 40 1 5.9944 12.0090 0.6898 41 1 4.0013 12.4234 2.1053 42 1 4.2022 10.6855 1.7786 43 1 4.6705 11.3532 3.3607 44 1 3.8323 6.5064 -1.2297 45 1 3.1280 4.5121 -2.4758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128159484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:17 Heat of formation + Delta-G solvation = -57.491413 kcal Electronic energy + Delta-G solvation = -29007.711816 eV Core-core repulsion = 24797.850405 eV Total energy + Delta-G solvation = -4209.861411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.35671 -42.10452 -40.32475 -38.82842 -37.18961 -36.14558 -35.86823 -34.34386 -34.21509 -32.88211 -31.38056 -30.04123 -29.13933 -26.58145 -25.68377 -24.91798 -23.69462 -23.50165 -22.29638 -21.93835 -21.24266 -20.18085 -19.58745 -18.41652 -18.24396 -17.93668 -17.57610 -17.30252 -17.06798 -16.72484 -16.10945 -15.77568 -15.66819 -15.28224 -15.18897 -14.89448 -14.81378 -14.61995 -14.33742 -13.95524 -13.80665 -13.59007 -13.45783 -13.28597 -12.97941 -12.91305 -12.70671 -12.65815 -12.58465 -12.43653 -12.17497 -12.12126 -12.06108 -11.69433 -11.61965 -11.41326 -11.12407 -10.66465 -10.55839 -9.85704 -9.61693 -9.39091 -8.21013 -6.34798 -0.45456 -0.23094 0.45071 1.18131 1.30154 1.42183 1.44889 1.46909 1.56689 2.10898 2.38396 2.47513 2.58504 2.83526 3.11258 3.36483 3.46780 3.79459 3.86585 3.99988 4.10537 4.20794 4.24207 4.40205 4.47645 4.53252 4.57875 4.69432 4.82254 4.91814 4.95783 4.96455 5.00223 5.03014 5.06689 5.14593 5.21605 5.33194 5.34428 5.38180 5.48799 5.56731 5.67620 5.75501 5.92977 6.02736 6.45960 6.49975 6.68716 6.76166 7.10589 7.36447 8.86889 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.001908 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.749292 B =14673.455937 C =15030.804722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 C 0.258 3.742 4 N -0.509 5.509 5 C 0.022 3.978 6 C -0.091 4.091 7 C 0.144 3.856 8 N -0.634 5.634 9 C 0.521 3.479 10 O -0.513 6.513 11 C 0.497 3.503 12 O -0.545 6.545 13 N -0.669 5.669 14 C 0.274 3.726 15 H 0.019 0.981 16 C -0.553 4.553 17 H 0.069 0.931 18 C 0.022 3.978 19 N -0.911 5.911 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.267 1.267 24 C -0.116 4.116 25 C -0.128 4.128 26 C -0.098 4.098 27 C -0.065 4.065 28 C -0.018 4.018 29 O -0.216 6.216 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.153 0.847 36 H 0.433 0.567 37 H 0.409 0.591 38 H 0.267 0.733 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.157 0.843 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.795 -21.780 -9.493 28.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.070 4.070 3 C 0.046 3.954 4 N -0.239 5.239 5 C -0.090 4.090 6 C -0.113 4.113 7 C 0.049 3.951 8 N -0.281 5.281 9 C 0.304 3.696 10 O -0.388 6.388 11 C 0.276 3.724 12 O -0.424 6.424 13 N -0.318 5.318 14 C 0.172 3.828 15 H 0.037 0.963 16 C -0.591 4.591 17 H 0.087 0.913 18 C -0.179 4.179 19 N -0.549 5.549 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.191 1.191 24 C -0.155 4.155 25 C -0.186 4.186 26 C -0.118 4.118 27 C -0.084 4.084 28 C -0.069 4.069 29 O -0.108 6.108 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.170 0.830 36 H 0.273 0.727 37 H 0.245 0.755 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.175 0.825 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.756 -21.756 -8.703 28.237 hybrid contribution 1.087 0.956 -0.394 1.501 sum -14.669 -20.800 -9.097 27.029 Atomic orbital electron populations 1.21789 0.91768 1.04673 1.02301 1.20588 0.97718 0.81221 1.07518 1.27542 0.92876 0.97433 0.77500 1.70626 1.19942 1.03199 1.30095 1.19680 1.03930 0.93681 0.91674 1.19969 1.02034 0.88280 1.00967 1.17468 0.99791 0.86319 0.91536 1.42994 1.34561 1.23245 1.27328 1.20311 0.79850 0.83424 0.86049 1.90726 1.57418 1.70095 1.20557 1.19912 0.82146 0.83764 0.86553 1.90752 1.58423 1.71479 1.21716 1.46211 1.33728 1.29231 1.22664 1.18661 0.92095 0.81327 0.90765 0.96342 1.21509 0.97635 1.21885 1.18073 0.91266 1.25680 1.01950 0.95931 0.94326 1.70078 1.39901 1.27250 1.17633 0.85421 0.78865 0.78778 0.77834 1.19791 1.21161 1.19087 1.21738 0.94427 1.00028 0.99298 1.21724 0.96721 0.99958 1.00148 1.21268 0.98844 0.99435 0.92230 1.19983 0.99147 0.87558 1.01675 1.20567 1.04810 0.87073 0.94425 1.84502 1.68054 1.21668 1.36614 0.88008 0.92958 0.92386 0.85942 0.85896 0.82974 0.72705 0.75493 0.92438 0.92021 0.93407 0.93054 0.93676 0.94611 0.82509 0.81526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 71.98 0.71 -0.26 16 2 C -0.03 -0.27 6.56 29.85 0.20 -0.07 16 3 C 0.26 4.84 7.49 88.39 0.66 5.51 16 4 N -0.51 -12.37 11.34 -296.30 -3.36 -15.73 16 5 C 0.02 0.56 7.23 39.31 0.28 0.84 16 6 C -0.09 -2.17 10.01 22.61 0.23 -1.95 16 7 C 0.14 3.52 6.28 38.16 0.24 3.76 16 8 N -0.63 -16.14 5.31 -304.85 -1.62 -17.76 16 9 C 0.52 16.25 7.73 87.24 0.67 16.93 16 10 O -0.51 -16.85 13.91 -3.34 -0.05 -16.90 16 11 C 0.50 18.62 6.47 87.24 0.56 19.19 16 12 O -0.54 -22.48 13.62 -3.30 -0.04 -22.52 16 13 N -0.67 -27.27 5.02 -447.53 -2.25 -29.52 16 14 C 0.27 13.41 2.11 44.25 0.09 13.50 16 15 H 0.02 1.07 7.56 -2.39 -0.02 1.05 16 16 C -0.55 -28.62 8.67 25.60 0.22 -28.39 16 17 H 0.07 3.43 7.73 -2.91 -0.02 3.41 16 18 C 0.02 1.17 5.21 84.65 0.44 1.61 16 19 N -0.91 -50.69 11.97 21.45 0.26 -50.43 16 20 Si 0.97 41.53 29.54 68.60 2.03 43.55 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 24 C -0.12 -5.33 5.49 30.60 0.17 -5.16 16 25 C -0.13 -5.23 8.52 71.98 0.61 -4.62 16 26 C -0.10 -2.28 8.67 22.43 0.19 -2.09 16 27 C -0.06 -1.33 10.05 22.28 0.22 -1.11 16 28 C -0.02 -0.44 7.43 22.89 0.17 -0.27 16 29 O -0.22 -4.61 10.78 -10.68 -0.12 -4.72 16 30 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.43 9.74 8.30 -92.71 -0.77 8.97 16 37 H 0.41 15.42 7.99 -92.71 -0.74 14.67 16 38 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.06 3.17 6.62 -2.39 -0.02 3.15 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 1.75 5.64 -2.39 -0.01 1.73 16 43 H 0.03 1.56 7.86 -2.39 -0.02 1.54 16 44 H 0.16 3.73 6.23 -2.91 -0.02 3.72 16 45 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -66.12 379.97 0.09 -66.03 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -0.45 Total: 30.58 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 5.68 Total: 17.42 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -6.97 Total: -113.44 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -0.21 Total: -44.15 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -66.12 0.09 -66.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128159484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.539 kcal (2) G-P(sol) polarization free energy of solvation -66.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds