Wall clock time and date at job start Wed Apr 1 2020 04:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.47650 * 2 1 4 4 N 1.29915 * 124.85086 * 89.99859 * 3 2 1 5 5 C 1.36077 * 108.80930 * 180.02562 * 4 3 2 6 6 C 1.39522 * 133.73679 * 180.32358 * 5 4 3 7 7 C 1.38349 * 119.67167 * 180.18178 * 6 5 4 8 8 N 1.39868 * 119.87525 * 179.73419 * 7 6 5 9 9 C 1.34773 * 119.99569 * 326.00502 * 8 7 6 10 10 O 1.21382 * 120.00302 * 354.88474 * 9 8 7 11 11 C 1.49341 * 120.00065 * 174.87963 * 9 8 7 12 12 O 1.21363 * 119.99778 * 5.66532 * 11 9 8 13 13 N 1.34774 * 120.00535 * 185.66578 * 11 9 8 14 14 C 1.46504 * 119.99666 * 356.69057 * 13 11 9 15 15 C 1.46499 * 120.00419 * 176.69249 * 13 11 9 16 16 H 1.09001 * 109.46889 * 359.97438 * 15 13 11 17 17 C 1.52995 * 109.47630 * 119.99744 * 15 13 11 18 18 C 1.50699 * 109.47153 * 240.00418 * 15 13 11 19 19 H 1.08003 * 119.99738 * 359.97438 * 18 15 13 20 20 C 1.37876 * 120.00449 * 180.02562 * 18 15 13 21 21 N 1.31515 * 119.99546 * 359.97438 * 20 18 15 22 22 Si 1.86793 * 120.00575 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.46960 * 270.00064 * 22 20 18 24 24 H 1.48501 * 109.46976 * 29.99629 * 22 20 18 25 25 H 1.48498 * 109.47474 * 149.99910 * 22 20 18 26 26 C 1.39358 * 120.25647 * 359.46240 * 7 6 5 27 27 C 1.37798 * 120.40187 * 0.26851 * 26 7 6 28 28 C 1.38718 * 119.97422 * 0.02562 * 27 26 7 29 29 O 1.34212 * 124.85284 * 270.00226 * 3 2 1 30 30 H 1.09003 * 109.46697 * 300.00152 * 1 2 3 31 31 H 1.09003 * 109.46755 * 59.99319 * 1 2 3 32 32 H 1.08994 * 109.47392 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46697 * 239.99848 * 2 1 3 34 34 H 1.09002 * 109.47260 * 120.00822 * 2 1 3 35 35 H 1.08003 * 120.16440 * 359.94078 * 6 5 4 36 36 H 0.96995 * 120.00361 * 146.01141 * 8 7 6 37 37 H 1.08994 * 109.47254 * 275.86566 * 14 13 11 38 38 H 1.08998 * 109.46771 * 35.86885 * 14 13 11 39 39 H 1.08996 * 109.46653 * 155.86814 * 14 13 11 40 40 H 1.09003 * 109.46759 * 59.99577 * 17 15 13 41 41 H 1.08995 * 109.47641 * 179.97438 * 17 15 13 42 42 H 1.08994 * 109.47073 * 300.00435 * 17 15 13 43 43 H 0.97000 * 120.00205 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.80281 * 180.29702 * 26 7 6 45 45 H 1.08001 * 120.01190 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2800 2.1206 1.0661 5 6 2.7155 3.3537 0.6901 6 6 3.1225 4.4885 1.3924 7 6 3.5156 5.6190 0.6984 8 7 3.9192 6.7608 1.3982 9 6 3.3410 7.0687 2.5760 10 8 2.4078 6.4090 2.9848 11 6 3.8487 8.2215 3.3783 12 8 4.7123 8.9433 2.9243 13 7 3.3480 8.4603 4.6066 14 6 2.2554 7.6337 5.1256 15 6 3.8962 9.5464 5.4228 16 1 4.6954 10.0451 4.8744 17 6 2.7896 10.5538 5.7409 18 6 4.4457 8.9814 6.7072 19 1 4.3916 7.9195 6.8968 20 6 5.0166 9.8201 7.6408 21 7 5.0820 11.1132 7.4101 22 14 5.6971 9.1199 9.2332 23 1 4.6286 9.1062 10.2644 24 1 6.1771 7.7342 8.9994 25 1 6.8265 9.9626 9.7018 26 6 3.5165 5.6226 -0.6951 27 6 3.1211 4.5038 -1.3956 28 6 2.7186 3.3651 -0.7131 29 8 2.2881 2.1438 -1.1014 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 3.1270 4.4858 2.4724 36 1 4.6151 7.3311 1.0357 37 1 1.3033 8.0199 4.7619 38 1 2.3844 6.6061 4.7858 39 1 2.2659 7.6602 6.2152 40 1 1.9907 10.0548 6.2894 41 1 3.1973 11.3617 6.3485 42 1 2.3922 10.9624 4.8119 43 1 5.4839 11.7033 8.0667 44 1 3.8293 6.5075 -1.2295 45 1 3.1246 4.5133 -2.4756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131974684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:07 Heat of formation + Delta-G solvation = -13.757476 kcal Electronic energy + Delta-G solvation = -29450.897463 eV Core-core repulsion = 25242.932498 eV Total energy + Delta-G solvation = -4207.964965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.45248 -40.83549 -38.88439 -37.60662 -35.85678 -35.30246 -34.67455 -33.54750 -32.78123 -30.36032 -29.56695 -29.12321 -26.34241 -25.46961 -25.28522 -24.63015 -22.81455 -22.63339 -21.49681 -20.85220 -19.44037 -18.61789 -17.74424 -17.11113 -17.00173 -16.62019 -16.31878 -15.99600 -15.57769 -15.18615 -14.99633 -14.68717 -14.43133 -14.29867 -14.23972 -13.61893 -13.26323 -13.23053 -13.18986 -12.74063 -12.53393 -12.41756 -12.22937 -12.13296 -11.81866 -11.66044 -11.61837 -11.54245 -11.14572 -10.88558 -10.81821 -10.79620 -10.60266 -10.36987 -10.30672 -10.22682 -9.26164 -8.91042 -8.67756 -8.49532 -8.33126 -7.77994 -6.14553 -4.23102 0.44171 0.84190 1.80576 2.16953 2.21324 2.55781 3.24334 3.31320 3.34307 3.36789 3.46761 3.67353 3.96498 4.28604 4.34743 4.48533 4.62587 4.65645 4.73407 4.77489 4.84680 5.01996 5.09776 5.17261 5.29113 5.33772 5.47626 5.67563 5.76656 5.87321 5.89595 5.97531 6.04977 6.07690 6.19353 6.44498 6.61512 6.69272 6.73048 6.93077 7.03134 7.21978 7.35802 7.40239 7.62582 7.79636 7.93851 8.05705 8.30349 8.54267 8.82127 9.43232 10.90878 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.002256 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.813664 B =12407.812724 C =13238.620582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.032 4.032 3 C 0.248 3.752 4 N -0.474 5.474 5 C 0.044 3.956 6 C -0.066 4.066 7 C 0.152 3.848 8 N -0.650 5.650 9 C 0.508 3.492 10 O -0.495 6.495 11 C 0.494 3.506 12 O -0.536 6.536 13 N -0.549 5.549 14 C 0.068 3.932 15 C 0.254 3.746 16 H 0.067 0.933 17 C -0.147 4.147 18 C -0.529 4.529 19 H 0.062 0.938 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.274 1.274 25 H -0.285 1.285 26 C -0.110 4.110 27 C -0.073 4.073 28 C -0.010 4.010 29 O -0.215 6.215 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.150 0.850 36 H 0.426 0.574 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.033 0.967 41 H 0.097 0.903 42 H 0.013 0.987 43 H 0.265 0.735 44 H 0.148 0.852 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 -17.592 -18.031 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.070 4.070 3 C 0.036 3.964 4 N -0.204 5.204 5 C -0.068 4.068 6 C -0.088 4.088 7 C 0.056 3.944 8 N -0.298 5.298 9 C 0.292 3.708 10 O -0.368 6.368 11 C 0.275 3.725 12 O -0.415 6.415 13 N -0.279 5.279 14 C -0.075 4.075 15 C 0.155 3.845 16 H 0.085 0.915 17 C -0.205 4.205 18 C -0.568 4.568 19 H 0.080 0.920 20 C -0.137 4.137 21 N -0.524 5.524 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.198 1.198 25 H -0.210 1.210 26 C -0.131 4.131 27 C -0.092 4.092 28 C -0.060 4.060 29 O -0.107 6.107 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.167 0.833 36 H 0.264 0.736 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.115 0.885 42 H 0.032 0.968 43 H 0.075 0.925 44 H 0.165 0.835 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.934 -17.617 -17.150 25.545 hybrid contribution 0.709 0.226 0.085 0.749 sum -6.225 -17.391 -17.065 25.148 Atomic orbital electron populations 1.21797 0.92631 1.03251 1.03283 1.20225 0.97224 0.83910 1.05637 1.26510 0.95155 0.96387 0.78319 1.70638 1.17823 1.03039 1.28869 1.19538 1.03141 0.93226 0.90896 1.20192 0.99144 0.88029 1.01387 1.17370 1.00078 0.86339 0.90640 1.43268 1.40355 1.24988 1.21186 1.21054 0.82524 0.85785 0.81450 1.90692 1.26443 1.52242 1.67458 1.19517 0.84187 0.85229 0.83596 1.90724 1.31953 1.48708 1.70163 1.48288 1.33368 1.32690 1.13541 1.22191 0.88401 0.96024 1.00873 1.19193 0.92957 0.82731 0.89617 0.91515 1.22090 0.98109 1.01395 0.98912 1.21277 1.39476 0.94292 1.01746 0.91955 1.24887 0.95463 0.94807 0.98523 1.69873 1.44140 1.02746 1.35637 0.86436 0.78664 0.79044 0.82945 1.20495 1.19836 1.21038 1.20791 1.01916 0.98550 0.91800 1.19574 1.01002 0.88500 1.00116 1.20291 1.04747 0.86483 0.94478 1.84467 1.68215 1.21832 1.36144 0.91456 0.92012 0.90587 0.88471 0.87133 0.83271 0.73558 0.93372 0.89324 0.90339 0.94807 0.88474 0.96784 0.92534 0.83454 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.90 37.16 0.37 -0.43 16 2 C -0.03 -0.19 6.56 -27.89 -0.18 -0.38 16 3 C 0.25 2.70 7.49 -13.09 -0.10 2.60 16 4 N -0.47 -6.63 11.34 -8.72 -0.10 -6.73 16 5 C 0.04 0.63 7.23 -84.72 -0.61 0.02 16 6 C -0.07 -0.97 8.69 -39.06 -0.34 -1.31 16 7 C 0.15 1.94 6.26 -83.73 -0.52 1.42 16 8 N -0.65 -8.85 5.33 -10.30 -0.05 -8.91 16 9 C 0.51 8.65 7.50 -11.64 -0.09 8.56 16 10 O -0.49 -8.86 10.85 5.47 0.06 -8.80 16 11 C 0.49 10.11 7.73 -11.64 -0.09 10.02 16 12 O -0.54 -12.00 15.82 5.49 0.09 -11.91 16 13 N -0.55 -11.95 2.75 -175.82 -0.48 -12.43 16 14 C 0.07 1.28 8.48 59.85 0.51 1.79 16 15 C 0.25 6.39 2.63 -69.09 -0.18 6.21 16 16 H 0.07 1.89 6.90 -51.93 -0.36 1.54 16 17 C -0.15 -3.47 8.97 37.15 0.33 -3.14 16 18 C -0.53 -14.09 7.95 -34.44 -0.27 -14.37 16 19 H 0.06 1.65 7.43 -52.48 -0.39 1.26 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -24.50 11.32 55.43 0.63 -23.87 16 22 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.11 -1.08 9.94 -39.33 -0.39 -1.47 16 27 C -0.07 -0.70 10.05 -39.57 -0.40 -1.10 16 28 C -0.01 -0.12 7.43 -38.62 -0.29 -0.41 16 29 O -0.21 -2.49 10.77 3.44 0.04 -2.45 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.15 2.42 6.44 -52.48 -0.34 2.08 16 36 H 0.43 5.01 8.30 -40.82 -0.34 4.67 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.61 5.36 -51.94 -0.28 1.34 16 39 H 0.08 1.51 7.11 -51.93 -0.37 1.14 16 40 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 41 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -32.28 377.86 -7.23 -39.51 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.73 Total: 4.41 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -2.35 Total: 9.70 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.01 Total: -51.94 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.18 Total: -23.16 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.28 -7.23 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131974684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.756 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds