Wall clock time and date at job start Wed Apr 1 2020 04:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.47650 * 2 1 4 4 N 1.29915 * 124.85086 * 89.99859 * 3 2 1 5 5 C 1.36077 * 108.80930 * 180.02562 * 4 3 2 6 6 C 1.39522 * 133.73679 * 180.32358 * 5 4 3 7 7 C 1.38349 * 119.67167 * 180.18178 * 6 5 4 8 8 N 1.39868 * 119.87525 * 179.73419 * 7 6 5 9 9 C 1.34773 * 119.99569 * 326.00502 * 8 7 6 10 10 O 1.21382 * 120.00302 * 354.88474 * 9 8 7 11 11 C 1.49341 * 120.00065 * 174.87963 * 9 8 7 12 12 O 1.21363 * 119.99778 * 5.66532 * 11 9 8 13 13 N 1.34774 * 120.00535 * 185.66578 * 11 9 8 14 14 C 1.46504 * 119.99666 * 356.69057 * 13 11 9 15 15 C 1.46499 * 120.00419 * 176.69249 * 13 11 9 16 16 H 1.09001 * 109.46889 * 359.97438 * 15 13 11 17 17 C 1.52995 * 109.47630 * 119.99744 * 15 13 11 18 18 C 1.50699 * 109.47153 * 240.00418 * 15 13 11 19 19 H 1.08003 * 119.99738 * 359.97438 * 18 15 13 20 20 C 1.37876 * 120.00449 * 180.02562 * 18 15 13 21 21 N 1.31515 * 119.99546 * 359.97438 * 20 18 15 22 22 Si 1.86793 * 120.00575 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.46960 * 270.00064 * 22 20 18 24 24 H 1.48501 * 109.46976 * 29.99629 * 22 20 18 25 25 H 1.48498 * 109.47474 * 149.99910 * 22 20 18 26 26 C 1.39358 * 120.25647 * 359.46240 * 7 6 5 27 27 C 1.37798 * 120.40187 * 0.26851 * 26 7 6 28 28 C 1.38718 * 119.97422 * 0.02562 * 27 26 7 29 29 O 1.34212 * 124.85284 * 270.00226 * 3 2 1 30 30 H 1.09003 * 109.46697 * 300.00152 * 1 2 3 31 31 H 1.09003 * 109.46755 * 59.99319 * 1 2 3 32 32 H 1.08994 * 109.47392 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46697 * 239.99848 * 2 1 3 34 34 H 1.09002 * 109.47260 * 120.00822 * 2 1 3 35 35 H 1.08003 * 120.16440 * 359.94078 * 6 5 4 36 36 H 0.96995 * 120.00361 * 146.01141 * 8 7 6 37 37 H 1.08994 * 109.47254 * 275.86566 * 14 13 11 38 38 H 1.08998 * 109.46771 * 35.86885 * 14 13 11 39 39 H 1.08996 * 109.46653 * 155.86814 * 14 13 11 40 40 H 1.09003 * 109.46759 * 59.99577 * 17 15 13 41 41 H 1.08995 * 109.47641 * 179.97438 * 17 15 13 42 42 H 1.08994 * 109.47073 * 300.00435 * 17 15 13 43 43 H 0.97000 * 120.00205 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.80281 * 180.29702 * 26 7 6 45 45 H 1.08001 * 120.01190 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2800 2.1206 1.0661 5 6 2.7155 3.3537 0.6901 6 6 3.1225 4.4885 1.3924 7 6 3.5156 5.6190 0.6984 8 7 3.9192 6.7608 1.3982 9 6 3.3410 7.0687 2.5760 10 8 2.4078 6.4090 2.9848 11 6 3.8487 8.2215 3.3783 12 8 4.7123 8.9433 2.9243 13 7 3.3480 8.4603 4.6066 14 6 2.2554 7.6337 5.1256 15 6 3.8962 9.5464 5.4228 16 1 4.6954 10.0451 4.8744 17 6 2.7896 10.5538 5.7409 18 6 4.4457 8.9814 6.7072 19 1 4.3916 7.9195 6.8968 20 6 5.0166 9.8201 7.6408 21 7 5.0820 11.1132 7.4101 22 14 5.6971 9.1199 9.2332 23 1 4.6286 9.1062 10.2644 24 1 6.1771 7.7342 8.9994 25 1 6.8265 9.9626 9.7018 26 6 3.5165 5.6226 -0.6951 27 6 3.1211 4.5038 -1.3956 28 6 2.7186 3.3651 -0.7131 29 8 2.2881 2.1438 -1.1014 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 3.1270 4.4858 2.4724 36 1 4.6151 7.3311 1.0357 37 1 1.3033 8.0199 4.7619 38 1 2.3844 6.6061 4.7858 39 1 2.2659 7.6602 6.2152 40 1 1.9907 10.0548 6.2894 41 1 3.1973 11.3617 6.3485 42 1 2.3922 10.9624 4.8119 43 1 5.4839 11.7033 8.0667 44 1 3.8293 6.5075 -1.2295 45 1 3.1246 4.5133 -2.4756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131974684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:06 Heat of formation + Delta-G solvation = -36.698045 kcal Electronic energy + Delta-G solvation = -29451.892241 eV Core-core repulsion = 25242.932498 eV Total energy + Delta-G solvation = -4208.959743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.33834 -42.20737 -40.28201 -38.84666 -37.54099 -36.15854 -35.85304 -34.73474 -34.20947 -31.55697 -31.23231 -30.06167 -27.90452 -27.35292 -26.53991 -25.64045 -23.98999 -23.54598 -22.38129 -22.25446 -20.93604 -19.72149 -18.97600 -18.52794 -18.14880 -17.97809 -17.79387 -17.37385 -17.01048 -16.70382 -16.11318 -15.87200 -15.56318 -15.40606 -15.06460 -14.88159 -14.71287 -14.42169 -14.14028 -14.03437 -13.86556 -13.62427 -13.56550 -13.45377 -13.04112 -12.91222 -12.76670 -12.72477 -12.67189 -12.44228 -12.29793 -12.25731 -12.13508 -12.07296 -11.67414 -11.39333 -11.24172 -10.60103 -10.39690 -9.59858 -9.57965 -9.32347 -8.18955 -6.35181 -0.41766 -0.23253 0.45073 1.17599 1.31602 1.41720 1.42116 1.43515 1.53167 2.04286 2.35116 2.47336 2.51458 2.78529 3.09585 3.23064 3.40226 3.79630 3.88288 4.00295 4.14327 4.19527 4.26314 4.39433 4.45562 4.54507 4.67354 4.69852 4.83421 4.86131 4.93890 4.94629 4.95174 4.98366 4.99534 5.06348 5.12396 5.16828 5.31918 5.34988 5.38077 5.54044 5.59679 5.82893 5.96043 6.07645 6.43678 6.51560 6.60332 6.71095 6.93729 7.35327 8.85776 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.002256 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.813664 B =12407.812724 C =13238.620582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.032 4.032 3 C 0.257 3.743 4 N -0.518 5.518 5 C 0.016 3.984 6 C -0.092 4.092 7 C 0.142 3.858 8 N -0.631 5.631 9 C 0.517 3.483 10 O -0.506 6.506 11 C 0.490 3.510 12 O -0.560 6.560 13 N -0.560 5.560 14 C 0.075 3.925 15 C 0.259 3.741 16 H 0.027 0.973 17 C -0.134 4.134 18 C -0.544 4.544 19 H 0.059 0.941 20 C 0.021 3.979 21 N -0.912 5.912 22 Si 0.965 3.035 23 H -0.269 1.269 24 H -0.273 1.273 25 H -0.282 1.282 26 C -0.097 4.097 27 C -0.057 4.057 28 C -0.020 4.020 29 O -0.214 6.214 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.435 0.565 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.024 0.976 43 H 0.267 0.733 44 H 0.187 0.813 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.192 -19.312 -20.100 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.070 4.070 3 C 0.046 3.954 4 N -0.248 5.248 5 C -0.095 4.095 6 C -0.114 4.114 7 C 0.047 3.953 8 N -0.280 5.280 9 C 0.300 3.700 10 O -0.380 6.380 11 C 0.272 3.728 12 O -0.441 6.441 13 N -0.290 5.290 14 C -0.067 4.067 15 C 0.158 3.842 16 H 0.045 0.955 17 C -0.192 4.192 18 C -0.582 4.582 19 H 0.077 0.923 20 C -0.180 4.180 21 N -0.550 5.550 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.198 1.198 25 H -0.207 1.207 26 C -0.117 4.117 27 C -0.076 4.076 28 C -0.070 4.070 29 O -0.106 6.106 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.276 0.724 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.204 0.796 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.405 -19.360 -19.252 28.289 hybrid contribution 0.848 0.674 0.613 1.245 sum -6.557 -18.685 -18.639 27.195 Atomic orbital electron populations 1.21792 0.91925 1.04678 1.02189 1.20577 0.97602 0.81246 1.07535 1.27507 0.92967 0.97406 0.77501 1.70621 1.19941 1.03680 1.30591 1.19724 1.04077 0.93436 0.92252 1.20067 1.01456 0.89508 1.00356 1.17548 1.00698 0.85153 0.91901 1.43042 1.39875 1.25177 1.19871 1.20246 0.82746 0.84721 0.82264 1.90693 1.27087 1.52230 1.68038 1.20069 0.83569 0.85796 0.83416 1.90697 1.32894 1.49794 1.70703 1.48246 1.34192 1.32571 1.14020 1.22239 0.88083 0.96002 1.00416 1.18841 0.92509 0.83818 0.89029 0.95537 1.21897 0.97769 1.00421 0.99144 1.21492 1.39975 0.94217 1.02543 0.92289 1.25668 0.95640 0.95100 1.01571 1.69991 1.44591 1.03757 1.36659 0.85451 0.78156 0.78158 0.79237 1.19431 1.19789 1.20737 1.21177 1.00415 0.99931 0.90137 1.20086 0.98575 0.86940 1.01982 1.20699 1.04992 0.87471 0.93854 1.84485 1.68154 1.21629 1.36292 0.93452 0.92179 0.87881 0.85497 0.86222 0.85979 0.72385 0.91901 0.88665 0.90942 0.93704 0.90621 0.95655 0.92365 0.79578 0.80103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.90 71.98 0.71 -0.59 16 2 C -0.03 -0.32 6.56 29.85 0.20 -0.13 16 3 C 0.26 5.37 7.49 88.39 0.66 6.03 16 4 N -0.52 -14.76 11.34 -296.32 -3.36 -18.12 16 5 C 0.02 0.48 7.23 39.30 0.28 0.76 16 6 C -0.09 -2.78 8.69 22.61 0.20 -2.58 16 7 C 0.14 3.51 6.26 38.15 0.24 3.75 16 8 N -0.63 -16.80 5.33 -304.85 -1.62 -18.42 16 9 C 0.52 17.74 7.50 87.24 0.65 18.40 16 10 O -0.51 -18.37 10.85 -3.35 -0.04 -18.41 16 11 C 0.49 20.43 7.73 87.24 0.67 21.11 16 12 O -0.56 -25.69 15.82 -3.29 -0.05 -25.75 16 13 N -0.56 -24.90 2.75 -828.53 -2.28 -27.18 16 14 C 0.07 2.83 8.48 127.77 1.08 3.92 16 15 C 0.26 13.38 2.63 44.24 0.12 13.50 16 16 H 0.03 1.58 6.90 -2.39 -0.02 1.56 16 17 C -0.13 -6.43 8.97 71.98 0.65 -5.79 16 18 C -0.54 -29.51 7.95 25.60 0.20 -29.30 16 19 H 0.06 3.17 7.43 -2.91 -0.02 3.14 16 20 C 0.02 1.12 5.30 84.65 0.45 1.57 16 21 N -0.91 -51.28 11.32 21.45 0.24 -51.04 16 22 Si 0.97 42.88 29.54 68.60 2.03 44.90 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 26 C -0.10 -1.59 9.94 22.44 0.22 -1.37 16 27 C -0.06 -0.91 10.05 22.28 0.22 -0.69 16 28 C -0.02 -0.46 7.43 22.89 0.17 -0.29 16 29 O -0.21 -4.58 10.77 -10.61 -0.11 -4.70 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.12 4.24 6.44 -2.91 -0.02 4.22 16 36 H 0.44 9.77 8.30 -92.71 -0.77 9.00 16 37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.10 3.52 5.36 -2.48 -0.01 3.50 16 39 H 0.07 2.81 7.11 -2.39 -0.02 2.80 16 40 H 0.04 2.00 7.67 -2.39 -0.02 1.98 16 41 H 0.08 3.98 6.07 -2.39 -0.01 3.96 16 42 H 0.02 1.10 8.14 -2.39 -0.02 1.09 16 43 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -73.06 377.86 1.81 -71.25 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.28 Total: 19.17 kcal Atomic # 6 Polarization: 21.56 SS G_CDS: 6.73 Total: 28.29 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -7.02 Total: -114.76 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -0.20 Total: -48.85 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -73.06 1.81 -71.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131974684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.547 kcal (2) G-P(sol) polarization free energy of solvation -73.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds