Wall clock time and date at job start Wed Apr 1 2020 02:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42895 * 114.00077 * 2 1 4 4 C 1.52994 * 109.47113 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47597 * 64.99603 * 4 3 2 6 6 C 1.46497 * 119.99991 * 274.13389 * 5 4 3 7 7 C 1.50703 * 109.47100 * 263.27816 * 6 5 4 8 8 H 1.07991 * 119.99881 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99974 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99845 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99800 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47315 * 60.00158 * 11 9 7 13 13 H 1.48500 * 109.47109 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47341 * 300.00109 * 11 9 7 15 15 C 1.34778 * 119.99929 * 94.13075 * 5 4 3 16 16 O 1.21362 * 120.00089 * 354.71128 * 15 5 4 17 17 C 1.49351 * 119.99762 * 174.71455 * 15 5 4 18 18 O 1.21370 * 120.00310 * 0.58636 * 17 15 5 19 19 N 1.34781 * 119.99950 * 180.58544 * 17 15 5 20 20 C 1.39745 * 120.00135 * 185.72793 * 19 17 15 21 21 C 1.38688 * 120.00108 * 23.88338 * 20 19 17 22 22 C 1.39497 * 119.76702 * 180.02562 * 21 20 19 23 23 C 1.43201 * 120.11444 * 179.97438 * 22 21 20 24 24 N 9.25310 * 112.10559 * 247.01024 * 2 1 3 25 25 C 1.39688 * 119.76964 * 359.97438 * 22 21 20 26 26 C 1.37982 * 120.00347 * 0.26192 * 25 22 21 27 27 C 1.38234 * 120.23037 * 359.48519 * 26 25 22 28 28 C 1.50698 * 119.88505 * 180.23901 * 27 26 25 29 29 H 1.09001 * 109.47227 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47341 * 300.00653 * 1 2 3 31 31 H 1.09004 * 109.46954 * 60.00476 * 1 2 3 32 32 H 1.09005 * 109.47514 * 59.99318 * 3 2 1 33 33 H 1.09007 * 109.47226 * 299.99367 * 3 2 1 34 34 H 1.09008 * 109.47058 * 304.99501 * 4 3 2 35 35 H 1.09005 * 109.47172 * 185.00171 * 4 3 2 36 36 H 1.08998 * 109.47323 * 23.27995 * 6 5 4 37 37 H 1.08997 * 109.47125 * 143.27995 * 6 5 4 38 38 H 0.97000 * 119.99738 * 179.97438 * 10 9 7 39 39 H 0.96998 * 119.99430 * 5.73129 * 19 17 15 40 40 H 1.07994 * 120.11935 * 0.03923 * 21 20 19 41 41 H 1.07997 * 119.99698 * 179.97438 * 25 22 21 42 42 H 1.07995 * 119.88005 * 179.72129 * 26 25 22 43 43 H 1.09006 * 109.47017 * 270.27495 * 28 27 26 44 44 H 1.09004 * 109.47229 * 30.27382 * 28 27 26 45 45 H 1.09001 * 109.47815 * 150.27313 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9768 0.5638 -1.2508 6 6 4.0197 -0.8958 -1.3691 7 6 5.4204 -1.3808 -1.0972 8 1 6.2004 -0.6728 -0.8596 9 6 5.7057 -2.7287 -1.1508 10 7 4.7557 -3.5910 -1.4397 11 14 7.4417 -3.3300 -0.8130 12 1 7.8450 -2.9322 0.5597 13 1 7.4850 -4.8096 -0.9318 14 1 8.3750 -2.7263 -1.7976 15 6 4.3432 1.3355 -2.2932 16 8 4.2171 2.5409 -2.2298 17 6 4.9045 0.7072 -3.5264 18 8 5.0207 -0.4990 -3.5940 19 7 5.2820 1.4798 -4.5644 20 6 5.6943 0.8887 -5.7617 21 6 5.2722 -0.3924 -6.0840 22 6 5.6872 -0.9779 -7.2802 23 6 5.2563 -2.3005 -7.6202 24 7 4.9111 -3.3483 -7.8920 25 6 6.5245 -0.2695 -8.1453 26 6 6.9427 1.0027 -7.8128 27 6 6.5273 1.5850 -6.6299 28 6 6.9844 2.9770 -6.2771 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8508 0.5685 0.8428 35 1 3.9785 2.1765 0.0902 36 1 3.3349 -1.3392 -0.6463 37 1 3.7234 -1.1874 -2.3767 38 1 4.9565 -4.5392 -1.4777 39 1 5.2675 2.4460 -4.4802 40 1 4.6243 -0.9348 -5.4115 41 1 6.8483 -0.7194 -9.0721 42 1 7.5937 1.5469 -8.4810 43 1 7.9172 2.9217 -5.7158 44 1 7.1435 3.5497 -7.1908 45 1 6.2233 3.4664 -5.6695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132914166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:53 Heat of formation + Delta-G solvation = -33.879892 kcal Electronic energy + Delta-G solvation = -30545.873833 eV Core-core repulsion = 26337.036295 eV Total energy + Delta-G solvation = -4208.837538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.86067 -39.48233 -38.05890 -37.34108 -36.49492 -35.46818 -34.29256 -32.71042 -32.50918 -30.14134 -29.83832 -27.67633 -27.07357 -26.15919 -24.78187 -23.11446 -22.86091 -22.36874 -21.33818 -19.50983 -18.92104 -17.18699 -16.79051 -16.48584 -16.09262 -15.86899 -15.52878 -15.52459 -15.31748 -14.93653 -14.84105 -14.41368 -14.23690 -14.04923 -13.82924 -13.48409 -13.36840 -13.19491 -13.02171 -12.86315 -12.31776 -12.26390 -12.08076 -11.97118 -11.79836 -11.75580 -11.61733 -11.57896 -11.30543 -10.94846 -10.88187 -10.77334 -10.48720 -10.29425 -9.97565 -9.66792 -9.44385 -8.87667 -8.66913 -8.24393 -8.03741 -7.85722 -5.96922 -3.98904 0.74426 1.24961 2.05997 2.68947 2.87151 3.00805 3.35210 3.40360 3.42075 3.72946 3.89645 3.97702 4.05622 4.11981 4.49527 4.68585 4.77742 4.89770 4.99613 5.20175 5.30552 5.34787 5.39798 5.41536 5.47004 5.53311 5.55056 5.57464 5.58022 5.79790 5.82883 5.87636 5.89886 6.06942 6.20745 6.29451 6.33428 6.40354 6.67437 6.91174 7.28744 7.40674 7.47442 7.56393 7.63067 7.91719 8.09082 8.21438 8.27961 8.58773 9.00031 9.62845 11.11709 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008188 B = 0.004265 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.671914 B = 6563.008779 C = 7960.349960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.117 3.883 5 N -0.548 5.548 6 C 0.232 3.768 7 C -0.516 4.516 8 H 0.051 0.949 9 C 0.071 3.929 10 N -0.887 5.887 11 Si 0.889 3.111 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.506 3.494 16 O -0.565 6.565 17 C 0.486 3.514 18 O -0.421 6.421 19 N -0.658 5.658 20 C 0.164 3.836 21 C -0.082 4.082 22 C -0.011 4.011 23 C 0.259 3.741 24 N -0.418 5.418 25 C -0.094 4.094 26 C -0.101 4.101 27 C -0.094 4.094 28 C -0.116 4.116 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.262 0.738 39 H 0.417 0.583 40 H 0.161 0.839 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 14.657 -7.154 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.030 4.030 4 C -0.006 4.006 5 N -0.278 5.278 6 C 0.114 3.886 7 C -0.555 4.555 8 H 0.070 0.930 9 C -0.131 4.131 10 N -0.526 5.526 11 Si 0.717 3.283 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.204 1.204 15 C 0.288 3.712 16 O -0.447 6.447 17 C 0.268 3.732 18 O -0.288 6.288 19 N -0.307 5.307 20 C 0.068 3.932 21 C -0.105 4.105 22 C -0.015 4.015 23 C -0.056 4.056 24 N -0.093 5.093 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.098 4.098 28 C -0.172 4.172 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.256 0.744 40 H 0.178 0.822 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.357 12.322 -7.460 14.468 hybrid contribution 0.939 0.546 0.427 1.168 sum -0.418 12.869 -7.033 14.671 Atomic orbital electron populations 1.22693 0.81944 1.02588 0.99162 1.88085 1.18855 1.27082 1.95204 1.22972 0.94696 0.85269 1.00050 1.21556 0.91715 0.99853 0.87514 1.48258 1.58300 1.10850 1.10353 1.19985 0.97897 0.70528 1.00213 1.21156 0.94460 0.92063 1.47819 0.93046 1.24763 0.96704 0.96589 0.95067 1.69904 1.32148 1.02251 1.48261 0.86706 0.85315 0.77669 0.78564 1.20413 1.21281 1.20357 1.19708 0.80198 0.86390 0.84873 1.90647 1.57527 1.14182 1.82395 1.20466 0.80574 0.87632 0.84536 1.90978 1.45998 1.12781 1.78995 1.43323 1.65486 1.11298 1.10587 1.17359 0.95999 0.93315 0.86564 1.21575 0.99314 0.94490 0.95110 1.15791 1.01881 0.87662 0.96182 1.25620 0.93657 0.92791 0.93535 1.81225 1.08484 1.11257 1.08384 1.21037 0.97076 0.94501 0.98962 1.20668 1.00261 0.94813 0.96182 1.19822 0.96935 0.97624 0.95406 1.20776 1.01873 0.92134 1.02466 0.89726 0.94654 0.94601 0.92819 0.93251 0.88833 0.88909 0.93275 0.92263 0.92850 0.74408 0.82199 0.85152 0.84769 0.90446 0.90814 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.45 9.26 -35.23 -0.33 -6.77 16 3 C 0.05 0.72 6.28 37.15 0.23 0.95 16 4 C 0.12 1.98 5.83 -4.05 -0.02 1.96 16 5 N -0.55 -11.26 2.46 -175.61 -0.43 -11.69 16 6 C 0.23 5.73 4.51 -5.19 -0.02 5.70 16 7 C -0.52 -13.94 7.76 -34.44 -0.27 -14.20 16 8 H 0.05 1.40 7.81 -52.49 -0.41 0.99 16 9 C 0.07 2.00 5.46 -17.82 -0.10 1.91 16 10 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 11 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.51 9.92 7.67 -11.63 -0.09 9.83 16 16 O -0.57 -10.72 16.05 5.49 0.09 -10.63 16 17 C 0.49 9.28 7.53 -11.63 -0.09 9.19 16 18 O -0.42 -9.51 9.22 5.48 0.05 -9.46 16 19 N -0.66 -9.78 5.16 -10.33 -0.05 -9.83 16 20 C 0.16 2.29 6.42 -83.80 -0.54 1.75 16 21 C -0.08 -1.29 8.43 -38.95 -0.33 -1.62 16 22 C -0.01 -0.16 5.73 -106.96 -0.61 -0.77 16 23 C 0.26 4.16 15.33 -22.47 -0.34 3.81 16 24 N -0.42 -7.58 18.54 41.84 0.78 -6.81 16 25 C -0.09 -0.99 9.75 -39.13 -0.38 -1.37 16 26 C -0.10 -0.93 9.67 -39.68 -0.38 -1.31 16 27 C -0.09 -1.01 5.90 -104.34 -0.62 -1.62 16 28 C -0.12 -0.91 9.73 36.00 0.35 -0.56 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.61 8.10 -51.92 -0.42 1.19 16 35 H 0.09 1.43 7.38 -51.93 -0.38 1.04 16 36 H 0.05 1.30 6.89 -51.93 -0.36 0.94 16 37 H 0.06 1.60 5.85 -51.93 -0.30 1.29 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.42 5.21 6.35 -40.82 -0.26 4.95 16 40 H 0.16 2.99 5.72 -52.49 -0.30 2.69 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 45 H 0.07 0.50 6.38 -51.93 -0.33 0.17 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -33.17 387.71 -6.14 -39.31 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.70 Total: 3.26 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: -2.10 Total: 15.20 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 1.03 Total: -53.68 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.19 Total: -26.86 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.17 -6.14 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132914166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.430 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds