Wall clock time and date at job start Wed Apr 1 2020 02:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42895 * 114.00077 * 2 1 4 4 C 1.52994 * 109.47113 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47597 * 64.99603 * 4 3 2 6 6 C 1.46497 * 119.99991 * 274.13389 * 5 4 3 7 7 C 1.50703 * 109.47100 * 263.27816 * 6 5 4 8 8 H 1.07991 * 119.99881 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99974 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99845 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99800 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47315 * 60.00158 * 11 9 7 13 13 H 1.48500 * 109.47109 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47341 * 300.00109 * 11 9 7 15 15 C 1.34778 * 119.99929 * 94.13075 * 5 4 3 16 16 O 1.21362 * 120.00089 * 354.71128 * 15 5 4 17 17 C 1.49351 * 119.99762 * 174.71455 * 15 5 4 18 18 O 1.21370 * 120.00310 * 0.58636 * 17 15 5 19 19 N 1.34781 * 119.99950 * 180.58544 * 17 15 5 20 20 C 1.39745 * 120.00135 * 185.72793 * 19 17 15 21 21 C 1.38688 * 120.00108 * 23.88338 * 20 19 17 22 22 C 1.39497 * 119.76702 * 180.02562 * 21 20 19 23 23 C 1.43201 * 120.11444 * 179.97438 * 22 21 20 24 24 N 9.25310 * 112.10559 * 247.01024 * 2 1 3 25 25 C 1.39688 * 119.76964 * 359.97438 * 22 21 20 26 26 C 1.37982 * 120.00347 * 0.26192 * 25 22 21 27 27 C 1.38234 * 120.23037 * 359.48519 * 26 25 22 28 28 C 1.50698 * 119.88505 * 180.23901 * 27 26 25 29 29 H 1.09001 * 109.47227 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47341 * 300.00653 * 1 2 3 31 31 H 1.09004 * 109.46954 * 60.00476 * 1 2 3 32 32 H 1.09005 * 109.47514 * 59.99318 * 3 2 1 33 33 H 1.09007 * 109.47226 * 299.99367 * 3 2 1 34 34 H 1.09008 * 109.47058 * 304.99501 * 4 3 2 35 35 H 1.09005 * 109.47172 * 185.00171 * 4 3 2 36 36 H 1.08998 * 109.47323 * 23.27995 * 6 5 4 37 37 H 1.08997 * 109.47125 * 143.27995 * 6 5 4 38 38 H 0.97000 * 119.99738 * 179.97438 * 10 9 7 39 39 H 0.96998 * 119.99430 * 5.73129 * 19 17 15 40 40 H 1.07994 * 120.11935 * 0.03923 * 21 20 19 41 41 H 1.07997 * 119.99698 * 179.97438 * 25 22 21 42 42 H 1.07995 * 119.88005 * 179.72129 * 26 25 22 43 43 H 1.09006 * 109.47017 * 270.27495 * 28 27 26 44 44 H 1.09004 * 109.47229 * 30.27382 * 28 27 26 45 45 H 1.09001 * 109.47815 * 150.27313 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9768 0.5638 -1.2508 6 6 4.0197 -0.8958 -1.3691 7 6 5.4204 -1.3808 -1.0972 8 1 6.2004 -0.6728 -0.8596 9 6 5.7057 -2.7287 -1.1508 10 7 4.7557 -3.5910 -1.4397 11 14 7.4417 -3.3300 -0.8130 12 1 7.8450 -2.9322 0.5597 13 1 7.4850 -4.8096 -0.9318 14 1 8.3750 -2.7263 -1.7976 15 6 4.3432 1.3355 -2.2932 16 8 4.2171 2.5409 -2.2298 17 6 4.9045 0.7072 -3.5264 18 8 5.0207 -0.4990 -3.5940 19 7 5.2820 1.4798 -4.5644 20 6 5.6943 0.8887 -5.7617 21 6 5.2722 -0.3924 -6.0840 22 6 5.6872 -0.9779 -7.2802 23 6 5.2563 -2.3005 -7.6202 24 7 4.9111 -3.3483 -7.8920 25 6 6.5245 -0.2695 -8.1453 26 6 6.9427 1.0027 -7.8128 27 6 6.5273 1.5850 -6.6299 28 6 6.9844 2.9770 -6.2771 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8508 0.5685 0.8428 35 1 3.9785 2.1765 0.0902 36 1 3.3349 -1.3392 -0.6463 37 1 3.7234 -1.1874 -2.3767 38 1 4.9565 -4.5392 -1.4777 39 1 5.2675 2.4460 -4.4802 40 1 4.6243 -0.9348 -5.4115 41 1 6.8483 -0.7194 -9.0721 42 1 7.5937 1.5469 -8.4810 43 1 7.9172 2.9217 -5.7158 44 1 7.1435 3.5497 -7.1908 45 1 6.2233 3.4664 -5.6695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132914166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:52 Heat of formation + Delta-G solvation = -55.808577 kcal Electronic energy + Delta-G solvation = -30546.824733 eV Core-core repulsion = 26337.036295 eV Total energy + Delta-G solvation = -4209.788437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.20169 -40.76150 -39.38263 -38.66997 -37.80282 -36.98352 -35.63779 -34.54838 -33.66619 -31.51139 -30.99230 -28.98913 -28.52535 -27.32546 -26.17811 -24.80252 -24.26473 -23.35780 -22.55904 -20.87175 -20.15657 -18.81725 -18.48502 -18.05745 -17.28636 -17.15689 -16.94955 -16.74408 -16.49559 -16.39349 -16.22005 -15.93706 -15.59753 -15.25360 -15.03225 -14.79388 -14.59947 -14.34395 -14.24704 -14.15170 -13.94327 -13.62057 -13.40485 -13.20795 -13.09307 -12.93618 -12.84203 -12.80128 -12.70438 -12.46594 -12.37116 -12.26372 -12.05426 -11.82287 -11.68838 -11.52804 -10.63155 -10.58521 -10.11877 -9.75656 -9.61287 -9.08691 -8.11495 -6.19283 -0.28097 0.11766 0.69793 1.35016 1.37477 1.39368 1.45375 1.57428 1.84505 2.26227 2.39783 2.59422 2.85804 2.88273 2.94365 3.23176 3.42341 3.86704 3.93322 4.11290 4.12629 4.19117 4.30474 4.37367 4.41407 4.51180 4.53889 4.57502 4.74725 4.84673 4.85078 4.85918 4.91175 5.01622 5.08420 5.26783 5.31309 5.36386 5.40933 5.46715 5.58576 5.80884 5.90808 6.10929 6.16242 6.26990 6.37648 6.38543 6.78342 6.86098 7.09473 7.45906 8.96212 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008188 B = 0.004265 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.671914 B = 6563.008779 C = 7960.349960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.053 3.947 4 C 0.110 3.890 5 N -0.557 5.557 6 C 0.258 3.742 7 C -0.512 4.512 8 H 0.047 0.953 9 C 0.020 3.980 10 N -0.923 5.923 11 Si 0.946 3.054 12 H -0.263 1.263 13 H -0.287 1.287 14 H -0.279 1.279 15 C 0.505 3.495 16 O -0.556 6.556 17 C 0.483 3.517 18 O -0.467 6.467 19 N -0.638 5.638 20 C 0.135 3.865 21 C -0.105 4.105 22 C -0.034 4.034 23 C 0.276 3.724 24 N -0.468 5.468 25 C -0.072 4.072 26 C -0.087 4.087 27 C -0.074 4.074 28 C -0.119 4.119 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.027 0.973 37 H 0.032 0.968 38 H 0.259 0.741 39 H 0.429 0.571 40 H 0.118 0.882 41 H 0.162 0.838 42 H 0.184 0.816 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 18.014 -8.362 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.025 4.025 4 C -0.012 4.012 5 N -0.287 5.287 6 C 0.138 3.862 7 C -0.551 4.551 8 H 0.066 0.934 9 C -0.179 4.179 10 N -0.563 5.563 11 Si 0.772 3.228 12 H -0.188 1.188 13 H -0.213 1.213 14 H -0.205 1.205 15 C 0.287 3.713 16 O -0.438 6.438 17 C 0.265 3.735 18 O -0.337 6.337 19 N -0.288 5.288 20 C 0.040 3.960 21 C -0.128 4.128 22 C -0.038 4.038 23 C -0.038 4.038 24 N -0.144 5.144 25 C -0.092 4.092 26 C -0.105 4.105 27 C -0.077 4.077 28 C -0.175 4.175 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.270 0.730 40 H 0.136 0.864 41 H 0.180 0.820 42 H 0.202 0.798 43 H 0.102 0.898 44 H 0.126 0.874 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.658 15.759 -8.677 18.002 hybrid contribution 0.314 -0.314 0.704 0.832 sum 0.971 15.445 -7.974 17.409 Atomic orbital electron populations 1.22859 0.79969 1.03172 1.00770 1.88033 1.21211 1.28529 1.95521 1.22976 0.93095 0.84814 1.01575 1.21816 0.93488 1.00211 0.85679 1.48157 1.59163 1.09346 1.12025 1.19334 0.96139 0.72998 0.97724 1.21375 0.95257 0.91992 1.46487 0.93428 1.25518 1.00159 0.96993 0.95250 1.70038 1.34035 1.02247 1.50004 0.85798 0.81033 0.77010 0.78952 1.18775 1.21250 1.20454 1.19852 0.79985 0.86490 0.84954 1.90631 1.57227 1.13526 1.82370 1.20499 0.80428 0.87356 0.85197 1.90988 1.48347 1.14491 1.79885 1.43085 1.64243 1.11472 1.10002 1.17537 0.98165 0.93318 0.86985 1.21281 1.00220 0.95627 0.95637 1.15899 1.04009 0.87071 0.96801 1.26086 0.92449 0.93026 0.92244 1.81215 1.10280 1.12705 1.10181 1.21462 0.94390 0.94589 0.98810 1.21233 0.99409 0.94052 0.95791 1.20263 0.94383 0.98525 0.94546 1.20932 1.01949 0.90314 1.04322 0.89813 0.91978 0.93919 0.89122 0.93592 0.89531 0.86979 0.95499 0.95019 0.93190 0.72988 0.86426 0.82011 0.79849 0.89807 0.87448 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.97 16 2 O -0.41 -14.49 9.26 -148.98 -1.38 -15.87 16 3 C 0.05 1.55 6.28 71.98 0.45 2.00 16 4 C 0.11 3.72 5.83 86.38 0.50 4.23 16 5 N -0.56 -23.56 2.46 -827.85 -2.04 -25.59 16 6 C 0.26 13.46 4.51 85.63 0.39 13.84 16 7 C -0.51 -28.67 7.76 25.60 0.20 -28.47 16 8 H 0.05 2.64 7.81 -2.92 -0.02 2.62 16 9 C 0.02 1.14 5.46 84.66 0.46 1.60 16 10 N -0.92 -56.82 13.29 21.45 0.28 -56.54 16 11 Si 0.95 46.00 29.54 68.60 2.03 48.03 16 12 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 15 C 0.50 20.10 7.67 87.24 0.67 20.77 16 16 O -0.56 -20.59 16.05 -3.29 -0.05 -20.64 16 17 C 0.48 19.17 7.53 87.24 0.66 19.83 16 18 O -0.47 -22.58 9.22 -3.31 -0.03 -22.61 16 19 N -0.64 -18.92 5.16 -304.94 -1.57 -20.50 16 20 C 0.13 3.70 6.42 38.17 0.24 3.94 16 21 C -0.10 -3.45 8.43 22.68 0.19 -3.26 16 22 C -0.03 -0.94 5.73 -21.38 -0.12 -1.06 16 23 C 0.28 9.22 15.33 88.33 1.35 10.58 16 24 N -0.47 -17.83 18.54 19.01 0.35 -17.48 16 25 C -0.07 -1.27 9.75 22.56 0.22 -1.05 16 26 C -0.09 -1.16 9.67 22.21 0.21 -0.95 16 27 C -0.07 -1.32 5.90 -19.68 -0.12 -1.43 16 28 C -0.12 -1.32 9.73 71.24 0.69 -0.62 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.09 1.98 8.14 -2.38 -0.02 1.97 16 33 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.09 3.02 8.10 -2.38 -0.02 3.00 16 35 H 0.11 3.30 7.38 -2.38 -0.02 3.29 16 36 H 0.03 1.52 6.89 -2.39 -0.02 1.50 16 37 H 0.03 1.85 5.85 -2.39 -0.01 1.84 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.43 10.18 6.35 -92.71 -0.59 9.59 16 40 H 0.12 4.92 5.72 -2.91 -0.02 4.90 16 41 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 43 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.11 0.55 8.09 -2.38 -0.02 0.53 16 45 H 0.07 0.77 6.38 -2.39 -0.02 0.75 16 Total: -1.00 -78.03 387.71 5.30 -72.72 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.46 Total: 16.56 kcal Atomic # 6 Polarization: 34.66 SS G_CDS: 7.26 Total: 41.92 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -2.97 Total: -120.10 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -1.46 Total: -59.12 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -78.03 5.30 -72.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132914166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.915 kcal (2) G-P(sol) polarization free energy of solvation -78.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds