Wall clock time and date at job start Wed Apr 1 2020 03:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34869 * 126.33351 * 2 1 4 4 C 1.34554 * 107.67575 * 180.24797 * 3 2 1 5 5 C 1.46999 * 125.76334 * 179.81019 * 4 3 2 6 6 C 1.36328 * 125.96062 * 359.67336 * 5 4 3 7 7 C 1.40720 * 106.71140 * 179.85370 * 6 5 4 8 8 C 1.34864 * 107.08789 * 0.41176 * 7 6 5 9 9 O 1.34230 * 108.73335 * 359.74594 * 8 7 6 10 10 N 1.31529 * 108.47781 * 359.77714 * 4 3 2 11 11 C 1.34167 * 108.62045 * 359.97438 * 10 4 3 12 12 C 1.50690 * 126.05234 * 179.97438 * 11 10 4 13 13 C 1.50699 * 109.47290 * 90.02310 * 12 11 10 14 14 O 1.21277 * 120.00227 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00054 * 179.97438 * 13 12 11 16 16 C 1.46957 * 120.59635 * 359.72735 * 15 13 12 17 17 C 1.53817 * 108.40351 * 124.75254 * 16 15 13 18 18 N 1.46971 * 108.57270 * 49.63606 * 17 16 15 19 19 C 1.36936 * 120.58657 * 124.63045 * 18 17 16 20 20 H 1.08002 * 119.99435 * 207.35763 * 19 18 17 21 21 C 1.38808 * 120.00536 * 27.36088 * 19 18 17 22 22 N 1.31618 * 119.99938 * 215.24759 * 21 19 18 23 23 Si 1.86797 * 119.99960 * 35.24025 * 21 19 18 24 24 H 1.48504 * 109.47084 * 95.37785 * 23 21 19 25 25 H 1.48503 * 109.47214 * 215.37305 * 23 21 19 26 26 H 1.48492 * 109.47201 * 335.37738 * 23 21 19 27 27 C 1.46959 * 118.81338 * 304.64806 * 18 17 16 28 28 C 1.46964 * 120.59320 * 180.02562 * 15 13 12 29 29 H 1.08999 * 109.47125 * 270.13551 * 1 2 3 30 30 H 1.09004 * 109.47359 * 30.13316 * 1 2 3 31 31 H 1.09004 * 109.46802 * 150.13260 * 1 2 3 32 32 H 1.07998 * 126.64341 * 359.96787 * 6 5 4 33 33 H 1.08004 * 126.45013 * 180.17499 * 7 6 5 34 34 H 1.08005 * 125.63783 * 179.72821 * 8 7 6 35 35 H 1.09002 * 109.47077 * 330.02402 * 12 11 10 36 36 H 1.09008 * 109.47525 * 210.02434 * 12 11 10 37 37 H 1.09004 * 109.61283 * 244.54168 * 16 15 13 38 38 H 1.09005 * 109.61170 * 5.04842 * 16 15 13 39 39 H 1.08997 * 109.73577 * 289.85284 * 17 16 15 40 40 H 1.08995 * 109.53221 * 169.30312 * 17 16 15 41 41 H 0.97001 * 120.00029 * 179.97438 * 22 21 19 42 42 H 1.09002 * 109.61210 * 295.48251 * 27 18 17 43 43 H 1.09003 * 109.74946 * 175.05855 * 27 18 17 44 44 H 1.09005 * 109.61197 * 354.94839 * 28 15 13 45 45 H 1.09003 * 109.60989 * 115.29056 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0865 0.0000 4 6 3.5809 0.6560 -0.0055 5 6 4.7764 1.5113 -0.0115 6 6 4.7855 2.8745 -0.0186 7 6 6.1359 3.2702 -0.0189 8 6 6.8787 2.1446 -0.0213 9 8 6.0551 1.0846 -0.0168 10 7 3.5768 -0.6593 -0.0041 11 6 2.3040 -1.0837 0.0030 12 6 1.8481 -2.5199 0.0064 13 6 1.7031 -2.9976 1.4284 14 8 1.9456 -2.2456 2.3484 15 7 1.3029 -4.2602 1.6776 16 6 0.9987 -5.1804 0.5729 17 6 1.8555 -6.4462 0.7452 18 7 1.7097 -6.9255 2.1269 19 6 1.3023 -8.2081 2.3801 20 1 0.7824 -8.4382 3.2984 21 6 1.5575 -9.2126 1.4566 22 7 0.6849 -10.1821 1.2809 23 14 3.1392 -9.1882 0.4633 24 1 4.1555 -10.0417 1.1296 25 1 2.8743 -9.7085 -0.9022 26 1 3.6453 -7.7951 0.3726 27 6 2.0085 -6.0037 3.2317 28 6 1.1566 -4.7395 3.0592 29 1 -0.3633 0.0024 1.0276 30 1 -0.3634 0.8888 -0.5159 31 1 -0.3633 -0.8912 -0.5118 32 1 3.9233 3.5248 -0.0214 33 1 6.5074 4.2844 -0.0210 34 1 7.9579 2.1027 -0.0263 35 1 2.5839 -3.1359 -0.5105 36 1 0.8873 -2.5975 -0.5026 37 1 -0.0585 -5.4448 0.5974 38 1 1.2367 -4.7024 -0.3775 39 1 2.9016 -6.2123 0.5476 40 1 1.5128 -7.2152 0.0531 41 1 0.8630 -10.8838 0.6353 42 1 3.0655 -5.7384 3.2111 43 1 1.7691 -6.4790 4.1830 44 1 1.4990 -3.9703 3.7515 45 1 0.1099 -4.9705 3.2574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152727608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:44 Heat of formation + Delta-G solvation = 52.564502 kcal Electronic energy + Delta-G solvation = -29825.797030 eV Core-core repulsion = 25620.708002 eV Total energy + Delta-G solvation = -4205.089028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.58558 -42.84006 -39.76645 -37.10158 -35.30305 -33.97336 -33.69454 -33.33375 -31.74719 -30.88825 -30.46035 -29.64091 -27.15805 -26.10355 -23.70327 -23.24212 -23.03833 -22.46212 -21.40568 -21.01144 -20.30097 -18.83098 -18.35805 -17.52891 -16.96619 -16.60898 -16.27983 -16.10563 -15.75481 -15.58459 -15.13568 -14.73735 -14.33356 -14.15194 -13.89089 -13.61013 -13.42746 -13.32050 -13.30233 -13.17555 -13.01837 -12.90957 -12.66848 -12.51913 -12.16819 -11.92138 -11.85021 -11.48904 -11.04848 -10.83504 -10.68593 -10.49466 -10.43397 -10.37396 -10.18043 -9.80860 -9.48967 -9.44113 -8.75733 -8.25348 -8.23274 -7.02935 -6.11122 -3.33142 0.49251 1.58725 1.63770 2.08534 2.70111 2.83359 3.10602 3.30899 3.35977 3.46993 3.52811 3.62635 4.39873 4.48979 4.49762 4.51572 4.59523 4.74743 4.81741 4.83036 5.00225 5.12056 5.22580 5.28135 5.33863 5.38749 5.45934 5.47766 5.53480 5.59851 5.73959 5.76381 5.77926 5.87576 5.94416 5.98791 6.04484 6.11429 6.23385 6.48238 6.57317 6.59444 6.74047 6.90086 7.47321 7.71672 7.85918 8.22628 8.40692 8.85758 9.64000 10.03895 11.03321 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002458 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.294016 B =11389.249999 C =12173.924187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.020 4.020 3 O -0.184 6.184 4 C 0.248 3.752 5 C 0.064 3.936 6 C -0.159 4.159 7 C -0.216 4.216 8 C -0.014 4.014 9 O -0.146 6.146 10 N -0.436 5.436 11 C 0.019 3.981 12 C -0.061 4.061 13 C 0.516 3.484 14 O -0.547 6.547 15 N -0.598 5.598 16 C 0.083 3.917 17 C 0.130 3.870 18 N -0.600 5.600 19 C -0.273 4.273 20 H 0.083 0.917 21 C 0.038 3.962 22 N -0.882 5.882 23 Si 0.836 3.164 24 H -0.292 1.292 25 H -0.293 1.293 26 H -0.255 1.255 27 C 0.132 3.868 28 C 0.097 3.903 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.214 0.786 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.263 0.737 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 26.095 -6.288 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 O -0.071 6.071 4 C 0.045 3.955 5 C 0.013 3.987 6 C -0.180 4.180 7 C -0.235 4.235 8 C -0.083 4.083 9 O -0.041 6.041 10 N -0.165 5.165 11 C -0.104 4.104 12 C -0.102 4.102 13 C 0.303 3.697 14 O -0.425 6.425 15 N -0.331 5.331 16 C -0.041 4.041 17 C 0.003 3.997 18 N -0.323 5.323 19 C -0.401 4.401 20 H 0.100 0.900 21 C -0.163 4.163 22 N -0.522 5.522 23 Si 0.663 3.337 24 H -0.220 1.220 25 H -0.220 1.220 26 H -0.180 1.180 27 C 0.006 3.994 28 C -0.026 4.026 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.176 0.824 33 H 0.176 0.824 34 H 0.230 0.770 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.103 25.635 -5.857 26.613 hybrid contribution 0.495 0.243 -0.608 0.821 sum 4.598 25.878 -6.465 27.067 Atomic orbital electron populations 1.20365 0.83214 1.04465 1.04447 1.23301 0.94736 0.83448 1.05845 1.84410 1.16078 1.35985 1.70643 1.21189 0.81807 0.87330 1.05162 1.17569 0.80462 0.89508 1.11208 1.21902 0.98806 0.92601 1.04727 1.21782 0.92528 1.00209 1.08936 1.24406 0.96434 0.83711 1.03750 1.84160 1.14055 1.35418 1.70434 1.70701 1.22482 1.07869 1.15475 1.20717 0.87894 0.95982 1.05806 1.20008 1.03707 0.89974 0.96475 1.20231 0.77195 0.81757 0.90552 1.90672 1.50854 1.54654 1.46296 1.48007 1.65865 1.10848 1.08377 1.22651 1.01413 0.91963 0.88083 1.21831 0.96442 0.93395 0.88027 1.44277 1.78645 1.09982 0.99411 1.18776 1.31174 0.82666 1.07456 0.89983 1.25238 0.97730 0.95814 0.97521 1.70080 1.32349 1.15039 1.34714 0.87619 0.87977 0.79131 0.78985 1.21985 1.22013 1.17975 1.21350 0.95831 0.89509 0.92748 1.22205 1.00933 0.97555 0.81952 0.89113 0.90012 0.88623 0.82393 0.82425 0.76982 0.86823 0.87085 0.90642 0.90690 0.94729 0.90407 0.92700 0.95574 0.90709 0.89790 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.21 36.01 0.37 -0.18 16 2 C -0.02 -0.25 7.38 -35.62 -0.26 -0.52 16 3 O -0.18 -2.47 10.80 3.45 0.04 -2.44 16 4 C 0.25 3.67 8.12 -14.13 -0.11 3.56 16 5 C 0.06 0.81 7.24 -36.72 -0.27 0.55 16 6 C -0.16 -1.53 10.85 -39.33 -0.43 -1.96 16 7 C -0.22 -1.61 10.88 -39.84 -0.43 -2.04 16 8 C -0.01 -0.11 12.08 29.54 0.36 0.25 16 9 O -0.15 -1.80 10.67 4.53 0.05 -1.75 16 10 N -0.44 -7.28 11.34 -8.13 -0.09 -7.37 16 11 C 0.02 0.27 5.59 -82.89 -0.46 -0.19 16 12 C -0.06 -0.80 4.37 -29.04 -0.13 -0.93 16 13 C 0.52 8.53 7.69 -10.98 -0.08 8.44 16 14 O -0.55 -10.87 15.44 5.56 0.09 -10.78 16 15 N -0.60 -9.98 2.94 -172.19 -0.51 -10.49 16 16 C 0.08 1.32 6.53 -3.37 -0.02 1.29 16 17 C 0.13 2.62 4.53 -3.36 -0.02 2.61 16 18 N -0.60 -13.65 2.70 -171.74 -0.46 -14.12 16 19 C -0.27 -7.29 9.86 -15.06 -0.15 -7.43 16 20 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 21 C 0.04 1.06 4.85 -17.43 -0.08 0.97 16 22 N -0.88 -25.75 13.97 55.49 0.78 -24.97 16 23 Si 0.84 20.54 26.43 -169.99 -4.49 16.05 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.26 -5.96 4.82 56.52 0.27 -5.68 16 27 C 0.13 2.60 6.67 -3.58 -0.02 2.58 16 28 C 0.10 1.69 6.59 -3.58 -0.02 1.67 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.59 7.14 -51.93 -0.37 0.22 16 32 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.16 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.21 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.11 1.43 7.73 -51.93 -0.40 1.03 16 36 H 0.11 1.02 6.90 -51.92 -0.36 0.67 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 0.91 5.91 -51.93 -0.31 0.61 16 39 H 0.03 0.72 6.69 -51.93 -0.35 0.37 16 40 H 0.08 1.67 5.59 -51.93 -0.29 1.38 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 1.42 7.94 -51.93 -0.41 1.01 16 44 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 372.94 15.07 5.62 5.62 Total: -1.00 -35.86 372.94 -6.68 -42.54 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.92 Total: -0.96 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -1.77 Total: 8.66 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.29 Total: -56.95 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.17 Total: -14.97 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.49 Total: 16.05 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.86 -6.68 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152727608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.106 kcal (2) G-P(sol) polarization free energy of solvation -35.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds