Wall clock time and date at job start Wed Apr 1 2020 03:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34869 * 126.33351 * 2 1 4 4 C 1.34554 * 107.67575 * 180.24797 * 3 2 1 5 5 C 1.46999 * 125.76334 * 179.81019 * 4 3 2 6 6 C 1.36328 * 125.96062 * 359.67336 * 5 4 3 7 7 C 1.40720 * 106.71140 * 179.85370 * 6 5 4 8 8 C 1.34864 * 107.08789 * 0.41176 * 7 6 5 9 9 O 1.34230 * 108.73335 * 359.74594 * 8 7 6 10 10 N 1.31529 * 108.47781 * 359.77714 * 4 3 2 11 11 C 1.34167 * 108.62045 * 359.97438 * 10 4 3 12 12 C 1.50690 * 126.05234 * 179.97438 * 11 10 4 13 13 C 1.50699 * 109.47290 * 90.02310 * 12 11 10 14 14 O 1.21277 * 120.00227 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00054 * 179.97438 * 13 12 11 16 16 C 1.46957 * 120.59635 * 359.72735 * 15 13 12 17 17 C 1.53817 * 108.40351 * 124.75254 * 16 15 13 18 18 N 1.46971 * 108.57270 * 49.63606 * 17 16 15 19 19 C 1.36936 * 120.58657 * 124.63045 * 18 17 16 20 20 H 1.08002 * 119.99435 * 207.35763 * 19 18 17 21 21 C 1.38808 * 120.00536 * 27.36088 * 19 18 17 22 22 N 1.31618 * 119.99938 * 215.24759 * 21 19 18 23 23 Si 1.86797 * 119.99960 * 35.24025 * 21 19 18 24 24 H 1.48504 * 109.47084 * 95.37785 * 23 21 19 25 25 H 1.48503 * 109.47214 * 215.37305 * 23 21 19 26 26 H 1.48492 * 109.47201 * 335.37738 * 23 21 19 27 27 C 1.46959 * 118.81338 * 304.64806 * 18 17 16 28 28 C 1.46964 * 120.59320 * 180.02562 * 15 13 12 29 29 H 1.08999 * 109.47125 * 270.13551 * 1 2 3 30 30 H 1.09004 * 109.47359 * 30.13316 * 1 2 3 31 31 H 1.09004 * 109.46802 * 150.13260 * 1 2 3 32 32 H 1.07998 * 126.64341 * 359.96787 * 6 5 4 33 33 H 1.08004 * 126.45013 * 180.17499 * 7 6 5 34 34 H 1.08005 * 125.63783 * 179.72821 * 8 7 6 35 35 H 1.09002 * 109.47077 * 330.02402 * 12 11 10 36 36 H 1.09008 * 109.47525 * 210.02434 * 12 11 10 37 37 H 1.09004 * 109.61283 * 244.54168 * 16 15 13 38 38 H 1.09005 * 109.61170 * 5.04842 * 16 15 13 39 39 H 1.08997 * 109.73577 * 289.85284 * 17 16 15 40 40 H 1.08995 * 109.53221 * 169.30312 * 17 16 15 41 41 H 0.97001 * 120.00029 * 179.97438 * 22 21 19 42 42 H 1.09002 * 109.61210 * 295.48251 * 27 18 17 43 43 H 1.09003 * 109.74946 * 175.05855 * 27 18 17 44 44 H 1.09005 * 109.61197 * 354.94839 * 28 15 13 45 45 H 1.09003 * 109.60989 * 115.29056 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0865 0.0000 4 6 3.5809 0.6560 -0.0055 5 6 4.7764 1.5113 -0.0115 6 6 4.7855 2.8745 -0.0186 7 6 6.1359 3.2702 -0.0189 8 6 6.8787 2.1446 -0.0213 9 8 6.0551 1.0846 -0.0168 10 7 3.5768 -0.6593 -0.0041 11 6 2.3040 -1.0837 0.0030 12 6 1.8481 -2.5199 0.0064 13 6 1.7031 -2.9976 1.4284 14 8 1.9456 -2.2456 2.3484 15 7 1.3029 -4.2602 1.6776 16 6 0.9987 -5.1804 0.5729 17 6 1.8555 -6.4462 0.7452 18 7 1.7097 -6.9255 2.1269 19 6 1.3023 -8.2081 2.3801 20 1 0.7824 -8.4382 3.2984 21 6 1.5575 -9.2126 1.4566 22 7 0.6849 -10.1821 1.2809 23 14 3.1392 -9.1882 0.4633 24 1 4.1555 -10.0417 1.1296 25 1 2.8743 -9.7085 -0.9022 26 1 3.6453 -7.7951 0.3726 27 6 2.0085 -6.0037 3.2317 28 6 1.1566 -4.7395 3.0592 29 1 -0.3633 0.0024 1.0276 30 1 -0.3634 0.8888 -0.5159 31 1 -0.3633 -0.8912 -0.5118 32 1 3.9233 3.5248 -0.0214 33 1 6.5074 4.2844 -0.0210 34 1 7.9579 2.1027 -0.0263 35 1 2.5839 -3.1359 -0.5105 36 1 0.8873 -2.5975 -0.5026 37 1 -0.0585 -5.4448 0.5974 38 1 1.2367 -4.7024 -0.3775 39 1 2.9016 -6.2123 0.5476 40 1 1.5128 -7.2152 0.0531 41 1 0.8630 -10.8838 0.6353 42 1 3.0655 -5.7384 3.2111 43 1 1.7691 -6.4790 4.1830 44 1 1.4990 -3.9703 3.7515 45 1 0.1099 -4.9705 3.2574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152727608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:43 Heat of formation + Delta-G solvation = 26.011977 kcal Electronic energy + Delta-G solvation = -29826.948434 eV Core-core repulsion = 25620.708002 eV Total energy + Delta-G solvation = -4206.240432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.52798 -43.57606 -41.11205 -38.64338 -36.33710 -35.63681 -34.56016 -34.09964 -33.56724 -32.38399 -31.15831 -30.75299 -28.73594 -27.00799 -25.31851 -24.76379 -24.02215 -23.30562 -22.57675 -21.92488 -21.45033 -20.19351 -19.24718 -18.89802 -18.18482 -17.80747 -17.46807 -17.10709 -16.89544 -16.65975 -16.58897 -16.12051 -16.00542 -15.36068 -15.11296 -14.83931 -14.70757 -14.49559 -14.15653 -14.07936 -13.97428 -13.96561 -13.90584 -13.58075 -13.42480 -13.21597 -12.96411 -12.78079 -12.56123 -12.49001 -12.24043 -12.11048 -11.88336 -11.69393 -11.38753 -11.18281 -10.91547 -10.68306 -10.43361 -9.87073 -9.05982 -8.87021 -8.22403 -5.41113 -0.35995 0.74989 0.81302 1.35264 1.36712 1.48063 1.53969 1.57491 1.76335 2.07864 2.37247 2.44643 2.79210 2.95858 3.37047 3.46789 3.58698 3.65039 3.88878 4.00169 4.08518 4.12498 4.18389 4.26129 4.33290 4.37445 4.45022 4.53996 4.61147 4.61472 4.64802 4.69536 4.77047 4.81410 4.87111 4.88509 4.94381 4.99335 5.01299 5.15141 5.18670 5.41160 5.50273 5.85767 5.90078 6.11045 6.43210 6.50838 6.89909 7.12103 7.61682 8.04417 8.95601 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002458 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.294016 B =11389.249999 C =12173.924187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.016 4.016 3 O -0.187 6.187 4 C 0.239 3.761 5 C 0.011 3.989 6 C -0.143 4.143 7 C -0.217 4.217 8 C -0.005 4.005 9 O -0.177 6.177 10 N -0.482 5.482 11 C -0.012 4.012 12 C -0.055 4.055 13 C 0.517 3.483 14 O -0.584 6.584 15 N -0.601 5.601 16 C 0.095 3.905 17 C 0.121 3.879 18 N -0.612 5.612 19 C -0.262 4.262 20 H 0.052 0.948 21 C -0.010 4.010 22 N -0.927 5.927 23 Si 0.897 3.103 24 H -0.308 1.308 25 H -0.291 1.291 26 H -0.236 1.236 27 C 0.132 3.868 28 C 0.107 3.893 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.174 0.826 33 H 0.193 0.807 34 H 0.254 0.746 35 H 0.120 0.880 36 H 0.155 0.845 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.066 0.934 41 H 0.263 0.737 42 H 0.022 0.978 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.872 29.034 -7.921 30.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.069 4.069 3 O -0.075 6.075 4 C 0.036 3.964 5 C -0.039 4.039 6 C -0.165 4.165 7 C -0.235 4.235 8 C -0.074 4.074 9 O -0.073 6.073 10 N -0.212 5.212 11 C -0.134 4.134 12 C -0.094 4.094 13 C 0.306 3.694 14 O -0.464 6.464 15 N -0.333 5.333 16 C -0.029 4.029 17 C -0.005 4.005 18 N -0.336 5.336 19 C -0.391 4.391 20 H 0.069 0.931 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.724 3.276 24 H -0.236 1.236 25 H -0.217 1.217 26 H -0.159 1.159 27 C 0.006 3.994 28 C -0.017 4.017 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.138 0.862 32 H 0.191 0.809 33 H 0.210 0.790 34 H 0.269 0.731 35 H 0.138 0.862 36 H 0.173 0.827 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.531 28.614 -7.510 29.928 hybrid contribution 0.429 -0.538 -0.005 0.688 sum 4.960 28.076 -7.514 29.484 Atomic orbital electron populations 1.20635 0.80014 1.06805 1.05029 1.24111 0.96305 0.82704 1.03829 1.84415 1.15913 1.36452 1.70676 1.21645 0.82752 0.87382 1.04642 1.17791 0.80341 0.90415 1.15335 1.22293 1.00560 0.91573 1.02048 1.22212 0.91287 1.01740 1.08293 1.25389 0.97840 0.82952 1.01181 1.84134 1.14439 1.37479 1.71260 1.70643 1.24035 1.09088 1.17391 1.21033 0.87734 0.97154 1.07494 1.20094 1.06091 0.89197 0.94045 1.20824 0.75739 0.81046 0.91748 1.90658 1.52252 1.55602 1.47912 1.48068 1.65902 1.11234 1.08084 1.22574 1.00673 0.89979 0.89674 1.21911 0.97188 0.95185 0.86173 1.44398 1.78855 1.09052 1.01342 1.18694 1.29750 0.84591 1.06033 0.93065 1.25695 0.99794 0.95863 0.99408 1.70152 1.33954 1.16361 1.36596 0.86662 0.83766 0.79697 0.77485 1.23638 1.21739 1.15934 1.21410 0.96025 0.89985 0.91985 1.21973 1.00576 0.96135 0.83020 0.89137 0.87813 0.86191 0.80868 0.79027 0.73051 0.86245 0.82715 0.90051 0.86201 0.94893 0.91609 0.92766 0.96010 0.90813 0.89773 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.21 71.24 0.73 -0.18 16 2 C -0.02 -0.39 7.38 24.83 0.18 -0.21 16 3 O -0.19 -4.97 10.80 -10.58 -0.11 -5.09 16 4 C 0.24 7.19 8.12 87.04 0.71 7.90 16 5 C 0.01 0.29 7.24 24.12 0.17 0.47 16 6 C -0.14 -2.57 10.85 22.43 0.24 -2.33 16 7 C -0.22 -2.66 10.88 22.10 0.24 -2.42 16 8 C -0.01 -0.07 12.08 67.04 0.81 0.74 16 9 O -0.18 -4.34 10.67 -6.71 -0.07 -4.41 16 10 N -0.48 -16.28 11.34 -293.48 -3.33 -19.61 16 11 C -0.01 -0.35 5.59 41.35 0.23 -0.12 16 12 C -0.05 -1.28 4.37 29.10 0.13 -1.15 16 13 C 0.52 16.11 7.69 87.66 0.67 16.79 16 14 O -0.58 -22.83 15.44 -3.02 -0.05 -22.88 16 15 N -0.60 -18.73 2.94 -817.06 -2.40 -21.14 16 16 C 0.09 2.70 6.53 86.57 0.57 3.26 16 17 C 0.12 4.67 4.53 86.57 0.39 5.07 16 18 N -0.61 -27.55 2.70 -697.27 -1.88 -29.43 16 19 C -0.26 -14.14 9.86 84.03 0.83 -13.31 16 20 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 21 C -0.01 -0.54 4.85 84.86 0.41 -0.12 16 22 N -0.93 -55.25 13.97 21.65 0.30 -54.95 16 23 Si 0.90 42.87 26.43 68.60 1.81 44.69 16 24 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.24 -10.40 4.82 99.48 0.48 -9.92 16 27 C 0.13 5.15 6.67 86.43 0.58 5.73 16 28 C 0.11 3.61 6.59 86.43 0.57 4.18 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.12 0.98 7.14 -2.39 -0.02 0.96 16 32 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.19 0.93 8.06 -2.91 -0.02 0.90 16 34 H 0.25 0.89 8.06 -2.91 -0.02 0.86 16 35 H 0.12 2.67 7.73 -2.39 -0.02 2.66 16 36 H 0.16 2.13 6.90 -2.38 -0.02 2.11 16 37 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.12 2.37 5.91 -2.38 -0.01 2.35 16 39 H 0.03 1.29 6.69 -2.39 -0.02 1.28 16 40 H 0.07 2.71 5.59 -2.39 -0.01 2.69 16 41 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 2.84 7.94 -2.39 -0.02 2.82 16 44 H 0.08 2.86 6.99 -2.38 -0.02 2.85 16 45 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -82.06 372.94 2.54 -79.52 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 0.80 Total: 9.00 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 7.46 Total: 24.29 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -7.31 Total: -125.13 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.23 Total: -32.38 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.81 Total: 44.69 kcal Total: -82.06 2.54 -79.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152727608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.537 kcal (2) G-P(sol) polarization free energy of solvation -82.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds