Wall clock time and date at job start Wed Apr 1 2020 04:20:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50705 * 109.47191 * 2 1
4 4 N 1.30108 * 124.94687 * 269.98083 * 3 2 1
5 5 C 1.35788 * 109.64131 * 179.97438 * 4 3 2
6 6 C 1.39740 * 133.60034 * 179.97438 * 5 4 3
7 7 C 1.36604 * 119.88456 * 180.02562 * 6 5 4
8 8 C 1.38774 * 120.67222 * 359.97434 * 7 6 5
9 9 C 1.37858 * 120.45061 * 0.04873 * 8 7 6
10 10 C 1.38831 * 119.68834 * 359.97438 * 9 8 7
11 11 N 1.36038 * 124.95320 * 89.99598 * 3 2 1
12 12 C 1.46500 * 126.34564 * 359.94908 * 11 3 2
13 13 C 1.50697 * 109.47258 * 264.42489 * 12 11 3
14 14 O 1.21298 * 119.99856 * 3.86927 * 13 12 11
15 15 N 1.34779 * 120.00151 * 183.87452 * 13 12 11
16 16 C 1.37099 * 119.99536 * 5.19606 * 15 13 12
17 17 H 1.07992 * 120.00597 * 318.41890 * 16 15 13
18 18 C 1.38955 * 119.99559 * 138.42157 * 16 15 13
19 19 N 1.31411 * 119.99946 * 160.57496 * 18 16 15
20 20 Si 1.86801 * 120.00013 * 340.57828 * 18 16 15
21 21 H 1.48502 * 109.47242 * 95.37708 * 20 18 16
22 22 H 1.48508 * 109.46985 * 215.37424 * 20 18 16
23 23 H 1.48491 * 109.47132 * 335.37414 * 20 18 16
24 24 C 1.46498 * 119.99911 * 185.19135 * 15 13 12
25 25 C 1.50707 * 109.46678 * 90.00498 * 24 15 13
26 26 O 1.20823 * 120.00121 * 359.97438 * 25 24 15
27 27 O 1.34224 * 120.00150 * 179.97438 * 25 24 15
28 28 C 1.45195 * 117.00361 * 179.97438 * 27 25 24
29 29 H 1.09004 * 109.46825 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47229 * 299.99701 * 1 2 3
31 31 H 1.08995 * 109.47247 * 60.00248 * 1 2 3
32 32 H 1.09000 * 109.47229 * 240.00299 * 2 1 3
33 33 H 1.08995 * 109.47247 * 119.99752 * 2 1 3
34 34 H 1.07998 * 120.05322 * 0.30331 * 6 5 4
35 35 H 1.08004 * 119.66097 * 179.97438 * 7 6 5
36 36 H 1.07994 * 119.77931 * 180.02562 * 8 7 6
37 37 H 1.07996 * 120.15630 * 179.97438 * 9 8 7
38 38 H 1.09008 * 109.47298 * 24.42147 * 12 11 3
39 39 H 1.08997 * 109.47518 * 144.41914 * 12 11 3
40 40 H 0.97002 * 120.00347 * 179.97438 * 19 18 16
41 41 H 1.09001 * 109.46853 * 209.99908 * 24 15 13
42 42 H 1.08991 * 109.47510 * 330.00403 * 24 15 13
43 43 H 1.08998 * 109.47442 * 300.00084 * 28 27 25
44 44 H 1.09004 * 109.47034 * 60.00406 * 28 27 25
45 45 H 1.09006 * 109.47058 * 179.97438 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4209 0.0000
4 7 2.2811 2.1234 -1.0665
5 6 2.7171 3.3584 -0.7080
6 6 3.1164 4.4865 -1.4297
7 6 3.5141 5.6128 -0.7670
8 6 3.5261 5.6510 0.6202
9 6 3.1369 4.5500 1.3528
10 6 2.7299 3.3962 0.6965
11 7 2.2921 2.1557 1.1150
12 6 2.1344 1.7132 2.5026
13 6 0.7912 2.1570 3.0219
14 8 0.0111 2.7199 2.2830
15 7 0.4566 1.9287 4.3074
16 6 1.3762 1.3897 5.1696
17 1 2.0174 0.5851 4.8415
18 6 1.4831 1.8787 6.4659
19 7 2.0602 1.1524 7.3966
20 14 0.8064 3.5686 6.8854
21 1 -0.5649 3.4294 7.4382
22 1 1.6831 4.2165 7.8939
23 1 0.7630 4.4031 5.6580
24 6 -0.8896 2.2566 4.7832
25 6 -1.7916 1.0633 4.5999
26 8 -1.3548 0.0438 4.1206
27 8 -3.0802 1.1329 4.9692
28 6 -3.8902 -0.0543 4.7628
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 3.1062 4.4693 -2.5095
35 1 3.8224 6.4825 -1.3284
36 1 3.8429 6.5492 1.1293
37 1 3.1484 4.5848 2.4321
38 1 2.1999 0.6260 2.5471
39 1 2.9232 2.1499 3.1152
40 1 2.1352 1.4939 8.3015
41 1 -0.8471 2.5210 5.8398
42 1 -1.2813 3.0990 4.2134
43 1 -3.9027 -0.3059 3.7024
44 1 -3.4680 -0.8850 5.3284
45 1 -4.9079 0.1366 5.1034
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000172359740.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:20:34
Heat of formation + Delta-G solvation = -30.013823 kcal
Electronic energy + Delta-G solvation = -31351.314657 eV
Core-core repulsion = 27142.644764 eV
Total energy + Delta-G solvation = -4208.669893 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.91943 -40.16144 -38.86974 -37.20777 -36.09419 -35.10197 -33.76547 -33.24714
-32.28751 -30.40925 -29.33630 -28.50864 -27.48694 -26.22993 -24.91761 -24.26104
-21.93160 -21.55511 -21.10518 -19.93989 -19.24498 -17.81463 -17.41803 -17.13972
-16.97576 -16.49064 -16.00634 -15.63121 -15.32532 -15.26923 -14.91965 -14.54128
-14.01649 -13.97150 -13.70836 -13.59647 -13.40786 -13.30198 -13.13342 -12.91212
-12.45546 -12.40857 -11.98858 -11.96428 -11.72813 -11.63307 -11.40854 -11.25339
-11.23628 -11.11108 -10.87378 -10.77993 -10.47519 -10.31732 -10.26624 -10.07409
-9.63288 -9.54892 -9.03369 -8.22397 -7.95210 -7.76417 -6.76554 -4.46633
1.24240 1.81727 2.69100 2.73963 2.79058 2.89203 3.04531 3.06671
3.11186 3.43300 3.83652 4.02857 4.18279 4.35691 4.63481 4.72570
5.12265 5.19198 5.21350 5.25421 5.28745 5.31070 5.34316 5.40042
5.45236 5.52463 5.58867 5.67906 5.68644 5.71668 5.76926 5.79770
5.86651 5.96879 6.01103 6.15937 6.40805 6.48320 6.70535 6.74802
6.78746 6.83196 6.91639 7.15953 7.41721 7.70349 7.89313 8.21663
8.22916 8.56679 8.90705 9.21447 10.32709
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.010567 B = 0.004517 C = 0.003666
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2649.014308 B = 6197.942951 C = 7635.726859
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.046 4.046
3 C 0.299 3.701
4 N -0.503 5.503
5 C 0.048 3.952
6 C -0.072 4.072
7 C -0.133 4.133
8 C -0.113 4.113
9 C -0.100 4.100
10 C 0.061 3.939
11 N -0.464 5.464
12 C 0.108 3.892
13 C 0.481 3.519
14 O -0.570 6.570
15 N -0.444 5.444
16 C -0.358 4.358
17 H 0.108 0.892
18 C 0.073 3.927
19 N -0.844 5.844
20 Si 0.862 3.138
21 H -0.268 1.268
22 H -0.277 1.277
23 H -0.255 1.255
24 C 0.108 3.892
25 C 0.450 3.550
26 O -0.489 6.489
27 O -0.368 6.368
28 C 0.037 3.963
29 H 0.064 0.936
30 H 0.065 0.935
31 H 0.059 0.941
32 H 0.096 0.904
33 H 0.083 0.917
34 H 0.123 0.877
35 H 0.123 0.877
36 H 0.125 0.875
37 H 0.121 0.879
38 H 0.119 0.881
39 H 0.122 0.878
40 H 0.280 0.720
41 H 0.107 0.893
42 H 0.114 0.886
43 H 0.058 0.942
44 H 0.060 0.940
45 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.693 2.127 -6.785 7.310
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.085 4.085
3 C 0.034 3.966
4 N -0.223 5.223
5 C -0.071 4.071
6 C -0.092 4.092
7 C -0.153 4.153
8 C -0.133 4.133
9 C -0.120 4.120
10 C -0.048 4.048
11 N -0.152 5.152
12 C -0.017 4.017
13 C 0.270 3.730
14 O -0.452 6.452
15 N -0.166 5.166
16 C -0.484 4.484
17 H 0.125 0.875
18 C -0.137 4.137
19 N -0.477 5.477
20 Si 0.687 3.313
21 H -0.194 1.194
22 H -0.203 1.203
23 H -0.179 1.179
24 C -0.017 4.017
25 C 0.291 3.709
26 O -0.374 6.374
27 O -0.285 6.285
28 C -0.057 4.057
29 H 0.083 0.917
30 H 0.084 0.916
31 H 0.078 0.922
32 H 0.115 0.885
33 H 0.102 0.898
34 H 0.141 0.859
35 H 0.141 0.859
36 H 0.143 0.857
37 H 0.139 0.861
38 H 0.137 0.863
39 H 0.140 0.860
40 H 0.090 0.910
41 H 0.124 0.876
42 H 0.131 0.869
43 H 0.077 0.923
44 H 0.079 0.921
45 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -1.988 1.716 -7.779 8.210
hybrid contribution -0.392 0.719 1.641 1.834
sum -2.381 2.435 -6.138 7.019
Atomic orbital electron populations
1.21704 0.93144 1.02148 1.03338 1.20156 0.97237 0.86959 1.04157
1.23512 0.96556 0.95852 0.80707 1.70369 1.21358 1.03419 1.27158
1.19020 1.04115 0.93631 0.90341 1.19892 0.99440 0.90553 0.99269
1.20529 1.02731 0.97777 0.94310 1.20775 1.01166 0.97467 0.93906
1.20030 1.01550 0.90785 0.99663 1.18807 1.03392 0.87609 0.95026
1.44937 1.52638 1.10805 1.06809 1.21514 0.98526 1.02654 0.79004
1.20435 0.88628 0.81107 0.82873 1.90649 1.52862 1.44380 1.57326
1.43271 1.07416 1.57087 1.08804 1.19072 1.16517 1.19002 0.93830
0.87494 1.25380 0.95541 0.97371 0.95387 1.69731 1.40147 1.35580
1.02266 0.87122 0.79124 0.85127 0.79899 1.19417 1.20342 1.17850
1.21340 0.83967 0.93773 1.02606 1.24631 0.80909 0.90944 0.74450
1.90604 1.74955 1.31848 1.39992 1.86517 1.23063 1.41330 1.77625
1.23154 0.94036 0.86621 1.01921 0.91733 0.91627 0.92175 0.88520
0.89824 0.85920 0.85896 0.85717 0.86109 0.86298 0.85993 0.90951
0.87577 0.86863 0.92288 0.92097 0.88638
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.20 9.89 37.16 0.37 -1.83 16
2 C -0.05 -0.67 6.22 -27.88 -0.17 -0.84 16
3 C 0.30 5.38 7.11 -154.82 -1.10 4.28 16
4 N -0.50 -9.59 11.27 -8.23 -0.09 -9.68 16
5 C 0.05 0.88 7.23 -84.70 -0.61 0.27 16
6 C -0.07 -1.11 10.05 -39.61 -0.40 -1.51 16
7 C -0.13 -1.78 9.96 -39.97 -0.40 -2.18 16
8 C -0.11 -1.59 10.03 -39.52 -0.40 -1.98 16
9 C -0.10 -1.67 10.05 -39.50 -0.40 -2.06 16
10 C 0.06 1.15 6.87 -83.99 -0.58 0.57 16
11 N -0.46 -8.66 2.30 -112.43 -0.26 -8.92 16
12 C 0.11 1.99 5.15 -5.20 -0.03 1.96 16
13 C 0.48 10.36 7.69 -10.99 -0.08 10.27 16
14 O -0.57 -13.49 15.64 5.54 0.09 -13.40 16
15 N -0.44 -9.83 1.59 -116.10 -0.19 -10.01 16
16 C -0.36 -8.41 8.91 -14.93 -0.13 -8.54 16
17 H 0.11 2.62 7.48 -52.49 -0.39 2.22 16
18 C 0.07 1.75 5.33 -17.47 -0.09 1.66 16
19 N -0.84 -21.34 13.96 55.50 0.77 -20.57 16
20 Si 0.86 18.06 25.03 -169.99 -4.26 13.80 16
21 H -0.27 -5.38 6.73 56.52 0.38 -5.00 16
22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16
23 H -0.25 -5.35 7.11 56.52 0.40 -4.95 16
24 C 0.11 2.25 4.82 -5.19 -0.03 2.23 16
25 C 0.45 9.27 8.02 36.01 0.29 9.56 16
26 O -0.49 -11.07 16.18 -18.75 -0.30 -11.37 16
27 O -0.37 -6.49 10.56 -39.24 -0.41 -6.90 16
28 C 0.04 0.49 10.56 101.05 1.07 1.56 16
29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
30 H 0.06 1.22 7.79 -51.93 -0.40 0.81 16
31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16
32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16
33 H 0.08 1.11 6.93 -51.93 -0.36 0.75 16
34 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16
35 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16
36 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16
37 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16
38 H 0.12 2.00 6.69 -51.92 -0.35 1.65 16
39 H 0.12 2.13 7.91 -51.93 -0.41 1.72 16
40 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16
41 H 0.11 2.19 3.59 -51.93 -0.19 2.00 16
42 H 0.11 2.24 7.36 -51.93 -0.38 1.85 16
43 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16
44 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16
45 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16
LS Contribution 382.50 15.07 5.76 5.76
Total: -1.00 -31.08 382.50 -7.44 -38.52
By element:
Atomic # 1 Polarization: 15.21 SS G_CDS: -5.87 Total: 9.35 kcal
Atomic # 6 Polarization: 16.11 SS G_CDS: -2.69 Total: 13.42 kcal
Atomic # 7 Polarization: -49.42 SS G_CDS: 0.24 Total: -49.18 kcal
Atomic # 8 Polarization: -31.04 SS G_CDS: -0.63 Total: -31.68 kcal
Atomic # 14 Polarization: 18.06 SS G_CDS: -4.26 Total: 13.80 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -31.08 -7.44 -38.52 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000172359740.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.507 kcal
(2) G-P(sol) polarization free energy of solvation -31.077 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.570 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.014 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds