Wall clock time and date at job start Wed Apr 1 2020 04:20:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50705 * 109.47191 * 2 1
4 4 N 1.30108 * 124.94687 * 269.98083 * 3 2 1
5 5 C 1.35788 * 109.64131 * 179.97438 * 4 3 2
6 6 C 1.39740 * 133.60034 * 179.97438 * 5 4 3
7 7 C 1.36604 * 119.88456 * 180.02562 * 6 5 4
8 8 C 1.38774 * 120.67222 * 359.97434 * 7 6 5
9 9 C 1.37858 * 120.45061 * 0.04873 * 8 7 6
10 10 C 1.38831 * 119.68834 * 359.97438 * 9 8 7
11 11 N 1.36038 * 124.95320 * 89.99598 * 3 2 1
12 12 C 1.46500 * 126.34564 * 359.94908 * 11 3 2
13 13 C 1.50697 * 109.47258 * 264.42489 * 12 11 3
14 14 O 1.21298 * 119.99856 * 3.86927 * 13 12 11
15 15 N 1.34779 * 120.00151 * 183.87452 * 13 12 11
16 16 C 1.37099 * 119.99536 * 5.19606 * 15 13 12
17 17 H 1.07992 * 120.00597 * 318.41890 * 16 15 13
18 18 C 1.38955 * 119.99559 * 138.42157 * 16 15 13
19 19 N 1.31411 * 119.99946 * 160.57496 * 18 16 15
20 20 Si 1.86801 * 120.00013 * 340.57828 * 18 16 15
21 21 H 1.48502 * 109.47242 * 95.37708 * 20 18 16
22 22 H 1.48508 * 109.46985 * 215.37424 * 20 18 16
23 23 H 1.48491 * 109.47132 * 335.37414 * 20 18 16
24 24 C 1.46498 * 119.99911 * 185.19135 * 15 13 12
25 25 C 1.50707 * 109.46678 * 90.00498 * 24 15 13
26 26 O 1.20823 * 120.00121 * 359.97438 * 25 24 15
27 27 O 1.34224 * 120.00150 * 179.97438 * 25 24 15
28 28 C 1.45195 * 117.00361 * 179.97438 * 27 25 24
29 29 H 1.09004 * 109.46825 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47229 * 299.99701 * 1 2 3
31 31 H 1.08995 * 109.47247 * 60.00248 * 1 2 3
32 32 H 1.09000 * 109.47229 * 240.00299 * 2 1 3
33 33 H 1.08995 * 109.47247 * 119.99752 * 2 1 3
34 34 H 1.07998 * 120.05322 * 0.30331 * 6 5 4
35 35 H 1.08004 * 119.66097 * 179.97438 * 7 6 5
36 36 H 1.07994 * 119.77931 * 180.02562 * 8 7 6
37 37 H 1.07996 * 120.15630 * 179.97438 * 9 8 7
38 38 H 1.09008 * 109.47298 * 24.42147 * 12 11 3
39 39 H 1.08997 * 109.47518 * 144.41914 * 12 11 3
40 40 H 0.97002 * 120.00347 * 179.97438 * 19 18 16
41 41 H 1.09001 * 109.46853 * 209.99908 * 24 15 13
42 42 H 1.08991 * 109.47510 * 330.00403 * 24 15 13
43 43 H 1.08998 * 109.47442 * 300.00084 * 28 27 25
44 44 H 1.09004 * 109.47034 * 60.00406 * 28 27 25
45 45 H 1.09006 * 109.47058 * 179.97438 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4209 0.0000
4 7 2.2811 2.1234 -1.0665
5 6 2.7171 3.3584 -0.7080
6 6 3.1164 4.4865 -1.4297
7 6 3.5141 5.6128 -0.7670
8 6 3.5261 5.6510 0.6202
9 6 3.1369 4.5500 1.3528
10 6 2.7299 3.3962 0.6965
11 7 2.2921 2.1557 1.1150
12 6 2.1344 1.7132 2.5026
13 6 0.7912 2.1570 3.0219
14 8 0.0111 2.7199 2.2830
15 7 0.4566 1.9287 4.3074
16 6 1.3762 1.3897 5.1696
17 1 2.0174 0.5851 4.8415
18 6 1.4831 1.8787 6.4659
19 7 2.0602 1.1524 7.3966
20 14 0.8064 3.5686 6.8854
21 1 -0.5649 3.4294 7.4382
22 1 1.6831 4.2165 7.8939
23 1 0.7630 4.4031 5.6580
24 6 -0.8896 2.2566 4.7832
25 6 -1.7916 1.0633 4.5999
26 8 -1.3548 0.0438 4.1206
27 8 -3.0802 1.1329 4.9692
28 6 -3.8902 -0.0543 4.7628
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 3.1062 4.4693 -2.5095
35 1 3.8224 6.4825 -1.3284
36 1 3.8429 6.5492 1.1293
37 1 3.1484 4.5848 2.4321
38 1 2.1999 0.6260 2.5471
39 1 2.9232 2.1499 3.1152
40 1 2.1352 1.4939 8.3015
41 1 -0.8471 2.5210 5.8398
42 1 -1.2813 3.0990 4.2134
43 1 -3.9027 -0.3059 3.7024
44 1 -3.4680 -0.8850 5.3284
45 1 -4.9079 0.1366 5.1034
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000172359740.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:20:33
Heat of formation + Delta-G solvation = -46.708631 kcal
Electronic energy + Delta-G solvation = -31352.038598 eV
Core-core repulsion = 27142.644764 eV
Total energy + Delta-G solvation = -4209.393834 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-43.23352 -41.75448 -40.50444 -38.41538 -37.65120 -36.83574 -35.17600 -34.44367
-34.12072 -31.72823 -30.80202 -29.74095 -28.80632 -27.71838 -26.63390 -25.47901
-23.21421 -22.87334 -22.51474 -21.48318 -20.80082 -19.40128 -19.00915 -18.63010
-18.34182 -17.92469 -17.49374 -17.21070 -16.88401 -16.57430 -16.31259 -16.08209
-15.56919 -15.26400 -14.95493 -14.88989 -14.80751 -14.62937 -14.60289 -14.53501
-14.07271 -13.61169 -13.54929 -13.38216 -13.01325 -12.97808 -12.83229 -12.61727
-12.51648 -12.41956 -12.34393 -12.08774 -12.01196 -11.84908 -11.76552 -11.67527
-11.23987 -10.97565 -10.74104 -10.00693 -9.23172 -9.03239 -8.60563 -6.33551
0.00996 0.59535 1.06996 1.13971 1.23043 1.34136 1.40614 1.47548
1.79287 1.84672 2.09661 2.43807 2.83615 2.95057 3.13952 3.45219
3.71310 3.74292 3.86345 3.92813 4.01901 4.06346 4.13124 4.15771
4.21465 4.25560 4.27241 4.28163 4.42526 4.51604 4.59052 4.62085
4.69077 4.81117 4.85194 4.98058 5.13089 5.20034 5.24274 5.25193
5.54145 5.58809 5.61836 5.90173 5.99673 6.01663 6.12448 6.66106
6.76626 6.88305 7.11062 7.45303 8.51975
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.010567 B = 0.004517 C = 0.003666
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2649.014308 B = 6197.942951 C = 7635.726859
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.045 4.045
3 C 0.285 3.715
4 N -0.522 5.522
5 C 0.016 3.984
6 C -0.082 4.082
7 C -0.121 4.121
8 C -0.101 4.101
9 C -0.126 4.126
10 C 0.032 3.968
11 N -0.472 5.472
12 C 0.116 3.884
13 C 0.482 3.518
14 O -0.593 6.593
15 N -0.450 5.450
16 C -0.354 4.354
17 H 0.089 0.911
18 C 0.040 3.960
19 N -0.882 5.882
20 Si 0.907 3.093
21 H -0.251 1.251
22 H -0.274 1.274
23 H -0.257 1.257
24 C 0.101 3.899
25 C 0.451 3.549
26 O -0.517 6.517
27 O -0.367 6.367
28 C 0.028 3.972
29 H 0.090 0.910
30 H 0.026 0.974
31 H 0.053 0.947
32 H 0.121 0.879
33 H 0.094 0.906
34 H 0.141 0.859
35 H 0.166 0.834
36 H 0.160 0.840
37 H 0.118 0.882
38 H 0.131 0.869
39 H 0.127 0.873
40 H 0.284 0.716
41 H 0.110 0.890
42 H 0.122 0.878
43 H 0.059 0.941
44 H 0.059 0.941
45 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.103 3.588 -7.314 8.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.084 4.084
3 C 0.020 3.980
4 N -0.242 5.242
5 C -0.102 4.102
6 C -0.102 4.102
7 C -0.141 4.141
8 C -0.120 4.120
9 C -0.147 4.147
10 C -0.076 4.076
11 N -0.160 5.160
12 C -0.009 4.009
13 C 0.271 3.729
14 O -0.477 6.477
15 N -0.172 5.172
16 C -0.481 4.481
17 H 0.107 0.893
18 C -0.167 4.167
19 N -0.516 5.516
20 Si 0.731 3.269
21 H -0.176 1.176
22 H -0.200 1.200
23 H -0.181 1.181
24 C -0.024 4.024
25 C 0.293 3.707
26 O -0.404 6.404
27 O -0.283 6.283
28 C -0.064 4.064
29 H 0.108 0.892
30 H 0.045 0.955
31 H 0.073 0.927
32 H 0.139 0.861
33 H 0.112 0.888
34 H 0.159 0.841
35 H 0.183 0.817
36 H 0.177 0.823
37 H 0.136 0.864
38 H 0.148 0.852
39 H 0.145 0.855
40 H 0.095 0.905
41 H 0.128 0.872
42 H 0.140 0.860
43 H 0.078 0.922
44 H 0.078 0.922
45 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -2.418 3.189 -8.306 9.220
hybrid contribution -0.317 0.298 1.731 1.785
sum -2.735 3.487 -6.575 7.929
Atomic orbital electron populations
1.21603 0.93644 1.03053 1.01004 1.20313 0.96591 0.85606 1.05844
1.24105 0.96503 0.96931 0.80454 1.70333 1.22104 1.04077 1.27710
1.19536 1.05357 0.94433 0.90833 1.20297 0.99241 0.90265 1.00364
1.21018 1.00547 0.98237 0.94261 1.21262 0.98833 0.97506 0.94438
1.20285 1.03091 0.91361 0.99931 1.19241 1.04490 0.88239 0.95657
1.44986 1.53173 1.11237 1.06644 1.21426 0.96840 1.03258 0.79409
1.20889 0.89357 0.80272 0.82401 1.90621 1.53887 1.45454 1.57758
1.43307 1.07876 1.57183 1.08869 1.18939 1.16747 1.18399 0.94040
0.89335 1.25874 0.95858 0.99839 0.95156 1.69793 1.41934 1.37069
1.02841 0.86384 0.79508 0.81389 0.79613 1.17639 1.19974 1.18064
1.21412 0.83672 0.94404 1.02898 1.24492 0.81920 0.90285 0.73987
1.90588 1.75744 1.32731 1.41377 1.86485 1.21760 1.43170 1.76864
1.23563 0.95266 0.85275 1.02343 0.89170 0.95501 0.92739 0.86078
0.88792 0.84127 0.81673 0.82273 0.86393 0.85167 0.85520 0.90542
0.87219 0.85994 0.92191 0.92243 0.84301
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.11 9.89 71.98 0.71 -3.40 16
2 C -0.04 -1.29 6.22 29.85 0.19 -1.11 16
3 C 0.29 10.43 7.11 137.92 0.98 11.41 16
4 N -0.52 -20.12 11.27 -179.95 -2.03 -22.14 16
5 C 0.02 0.60 7.23 39.45 0.29 0.89 16
6 C -0.08 -2.41 10.05 22.25 0.22 -2.18 16
7 C -0.12 -2.85 9.96 22.02 0.22 -2.63 16
8 C -0.10 -2.57 10.03 22.31 0.22 -2.35 16
9 C -0.13 -4.16 10.05 22.32 0.22 -3.93 16
10 C 0.03 1.23 6.87 38.86 0.27 1.50 16
11 N -0.47 -18.03 2.30 -509.63 -1.17 -19.20 16
12 C 0.12 4.39 5.15 85.63 0.44 4.83 16
13 C 0.48 21.17 7.69 87.66 0.67 21.85 16
14 O -0.59 -28.74 15.64 -3.09 -0.05 -28.79 16
15 N -0.45 -20.19 1.59 -639.60 -1.02 -21.21 16
16 C -0.35 -16.96 8.91 84.04 0.75 -16.21 16
17 H 0.09 4.49 7.48 -2.91 -0.02 4.46 16
18 C 0.04 1.90 5.33 84.93 0.45 2.36 16
19 N -0.88 -45.03 13.96 21.66 0.30 -44.73 16
20 Si 0.91 36.63 25.03 68.60 1.72 38.34 16
21 H -0.25 -9.40 6.73 99.48 0.67 -8.73 16
22 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16
23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16
24 C 0.10 4.19 4.82 85.64 0.41 4.60 16
25 C 0.45 18.54 8.02 71.24 0.57 19.11 16
26 O -0.52 -23.66 16.18 21.97 0.36 -23.31 16
27 O -0.37 -12.45 10.56 -51.36 -0.54 -13.00 16
28 C 0.03 0.71 10.56 113.37 1.20 1.91 16
29 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16
30 H 0.03 1.01 7.79 -2.39 -0.02 0.99 16
31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16
32 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16
33 H 0.09 2.48 6.93 -2.39 -0.02 2.46 16
34 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16
35 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16
36 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16
37 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16
38 H 0.13 4.53 6.69 -2.38 -0.02 4.52 16
39 H 0.13 4.60 7.91 -2.39 -0.02 4.58 16
40 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16
41 H 0.11 4.43 3.59 -2.39 -0.01 4.42 16
42 H 0.12 4.79 7.36 -2.39 -0.02 4.78 16
43 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16
44 H 0.06 1.52 8.13 -2.38 -0.02 1.50 16
45 H 0.14 2.26 8.14 -2.38 -0.02 2.24 16
Total: -1.00 -68.88 382.50 6.37 -62.51
By element:
Atomic # 1 Polarization: 33.89 SS G_CDS: 0.98 Total: 34.88 kcal
Atomic # 6 Polarization: 28.83 SS G_CDS: 7.82 Total: 36.65 kcal
Atomic # 7 Polarization: -103.37 SS G_CDS: -3.92 Total: -107.28 kcal
Atomic # 8 Polarization: -64.86 SS G_CDS: -0.24 Total: -65.09 kcal
Atomic # 14 Polarization: 36.63 SS G_CDS: 1.72 Total: 38.34 kcal
Total: -68.88 6.37 -62.51 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000172359740.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.804 kcal
(2) G-P(sol) polarization free energy of solvation -68.882 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.078 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.369 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.513 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.709 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds