Wall clock time and date at job start Wed Apr 1 2020 04:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47047 * 2 1 4 4 N 1.29909 * 124.84949 * 89.99842 * 3 2 1 5 5 C 1.36086 * 108.80363 * 179.97438 * 4 3 2 6 6 C 1.39525 * 133.73491 * 180.02562 * 5 4 3 7 7 C 1.38348 * 119.66905 * 179.97438 * 6 5 4 8 8 N 1.39867 * 119.87399 * 179.97438 * 7 6 5 9 9 C 1.34771 * 120.00392 * 144.85841 * 8 7 6 10 10 O 1.21387 * 120.00013 * 4.59507 * 9 8 7 11 11 C 1.49344 * 120.00211 * 184.59389 * 9 8 7 12 12 O 1.21356 * 120.00056 * 0.02562 * 11 9 8 13 13 N 1.34780 * 119.99993 * 180.02562 * 11 9 8 14 14 C 1.46494 * 119.99976 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47075 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47171 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47042 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00299 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99679 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99773 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00012 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47035 * 90.00274 * 21 19 17 23 23 H 1.48505 * 109.46846 * 210.00070 * 21 19 17 24 24 H 1.48494 * 109.46946 * 330.00027 * 21 19 17 25 25 C 1.39362 * 120.25941 * 359.97438 * 7 6 5 26 26 C 1.37792 * 120.40157 * 0.02562 * 25 7 6 27 27 C 1.38723 * 119.97468 * 359.97438 * 26 25 7 28 28 O 1.34210 * 124.84753 * 269.95242 * 3 2 1 29 29 H 1.09005 * 109.47656 * 300.00261 * 1 2 3 30 30 H 1.09000 * 109.47511 * 60.00555 * 1 2 3 31 31 H 1.09008 * 109.47437 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47440 * 239.99422 * 2 1 3 33 33 H 1.09005 * 109.47068 * 119.99344 * 2 1 3 34 34 H 1.08005 * 120.16607 * 359.66823 * 6 5 4 35 35 H 0.97003 * 119.99777 * 324.85935 * 8 7 6 36 36 H 0.97005 * 119.99715 * 0.02562 * 13 11 9 37 37 H 1.09005 * 109.46833 * 300.00235 * 14 13 11 38 38 H 1.08993 * 109.47212 * 60.00268 * 14 13 11 39 39 H 1.08997 * 109.47374 * 300.00008 * 15 14 13 40 40 H 1.09007 * 109.47351 * 60.00016 * 15 14 13 41 41 H 1.09005 * 109.46668 * 299.99918 * 16 15 14 42 42 H 1.08993 * 109.47280 * 59.99891 * 16 15 14 43 43 H 0.97002 * 119.99957 * 180.02562 * 20 19 17 44 44 H 1.08000 * 119.80376 * 179.97438 * 25 7 6 45 45 H 1.08000 * 120.01420 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2797 2.1207 1.0661 5 6 2.7161 3.3536 0.6900 6 6 3.1187 4.4900 1.3922 7 6 3.5185 5.6180 0.6981 8 7 3.9224 6.7598 1.3978 9 6 4.9101 7.5356 0.9089 10 8 5.3921 7.2913 -0.1780 11 6 5.4115 8.6958 1.7044 12 8 4.9298 8.9399 2.7912 13 7 6.3988 9.4720 1.2152 14 6 6.8911 10.6097 1.9958 15 6 8.0024 11.3185 1.2190 16 6 8.5169 12.5065 2.0345 17 6 9.6111 13.2050 1.2690 18 1 9.9100 12.8381 0.2983 19 6 10.2314 14.3118 1.8086 20 7 11.1867 14.9211 1.1409 21 14 9.7150 14.9460 3.4881 22 1 10.5302 14.2853 4.5388 23 1 9.9255 16.4148 3.5487 24 1 8.2787 14.6421 3.7117 25 6 3.5206 5.6211 -0.6955 26 6 3.1244 4.5026 -1.3959 27 6 2.7209 3.3643 -0.7133 28 8 2.2887 2.1435 -1.1014 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.1134 4.4909 2.4722 35 1 3.4915 6.9933 2.2349 36 1 6.7835 9.2771 0.3463 37 1 6.0731 11.3071 2.1769 38 1 7.2832 10.2542 2.9486 39 1 8.8204 10.6214 1.0374 40 1 7.6099 11.6741 0.2662 41 1 7.6991 13.2038 2.2163 42 1 8.9095 12.1506 2.9869 43 1 11.6233 15.6996 1.5206 44 1 3.8337 6.5059 -1.2299 45 1 3.1288 4.5117 -2.4758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172558070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:03 Heat of formation + Delta-G solvation = -38.995647 kcal Electronic energy + Delta-G solvation = -27762.205244 eV Core-core repulsion = 23553.145870 eV Total energy + Delta-G solvation = -4209.059374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.67352 -41.26430 -39.38220 -38.01928 -36.01902 -35.50673 -35.07242 -33.79581 -33.38192 -31.54814 -30.67640 -29.38943 -27.73564 -25.65378 -25.05427 -23.39808 -22.86651 -22.25281 -21.70687 -20.90229 -20.26054 -19.12346 -18.60583 -17.70471 -17.24855 -16.86746 -16.73218 -16.51816 -16.18018 -15.51289 -15.26117 -15.15293 -14.69930 -14.49237 -14.43956 -14.25858 -13.88654 -13.81803 -13.60494 -13.38269 -12.95471 -12.75904 -12.39571 -12.23007 -12.15656 -12.02507 -11.88171 -11.78177 -11.77054 -11.16945 -10.98117 -10.95625 -10.69943 -10.24681 -10.04869 -9.84407 -9.66860 -9.27561 -9.19786 -8.91570 -8.65245 -8.58953 -6.09316 -4.08605 0.21915 0.53238 1.23839 1.91592 1.97437 2.07641 2.89758 3.19070 3.20816 3.28365 3.36292 3.39174 3.44232 4.04258 4.19039 4.33685 4.41021 4.44277 4.48697 4.54813 4.75640 4.82314 4.84370 5.09344 5.15148 5.24390 5.30743 5.35547 5.45954 5.49761 5.54078 5.62506 5.65529 5.75724 5.82767 5.86215 6.03244 6.20251 6.32853 6.44737 6.61922 6.68889 7.11627 7.16011 7.17309 7.29170 7.41496 7.71388 7.79896 8.46604 8.94584 9.52418 11.03887 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.041168 B = 0.001440 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.980958 B =19441.111552 C =19871.798988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.033 4.033 3 C 0.252 3.748 4 N -0.479 5.479 5 C 0.040 3.960 6 C -0.087 4.087 7 C 0.149 3.851 8 N -0.645 5.645 9 C 0.512 3.488 10 O -0.497 6.497 11 C 0.505 3.495 12 O -0.521 6.521 13 N -0.687 5.687 14 C 0.111 3.889 15 C -0.116 4.116 16 C -0.010 4.010 17 C -0.524 4.524 18 H 0.073 0.927 19 C 0.068 3.932 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.090 4.090 26 C -0.072 4.072 27 C -0.003 4.003 28 O -0.212 6.212 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.143 0.857 35 H 0.426 0.574 36 H 0.414 0.586 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.160 0.840 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.010 -29.710 -3.318 37.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.071 4.071 3 C 0.041 3.959 4 N -0.208 5.208 5 C -0.071 4.071 6 C -0.108 4.108 7 C 0.053 3.947 8 N -0.293 5.293 9 C 0.295 3.705 10 O -0.370 6.370 11 C 0.284 3.716 12 O -0.398 6.398 13 N -0.339 5.339 14 C -0.011 4.011 15 C -0.154 4.154 16 C -0.048 4.048 17 C -0.562 4.562 18 H 0.091 0.909 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.110 4.110 26 C -0.091 4.091 27 C -0.053 4.053 28 O -0.104 6.104 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.161 0.839 35 H 0.265 0.735 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.177 0.823 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.878 -29.659 -2.672 37.553 hybrid contribution 0.008 0.703 0.218 0.736 sum -22.870 -28.956 -2.454 36.980 Atomic orbital electron populations 1.21795 0.92549 1.03373 1.03213 1.20253 0.97262 0.83833 1.05795 1.26529 0.94745 0.96391 0.78277 1.70630 1.18354 1.02915 1.28929 1.19417 1.03511 0.93226 0.90991 1.19871 1.02030 0.88520 1.00391 1.17356 0.99719 0.86392 0.91220 1.43092 1.35846 1.23531 1.26807 1.20535 0.79707 0.83835 0.86467 1.90777 1.56347 1.69929 1.19973 1.19681 0.81926 0.83596 0.86392 1.90790 1.57469 1.70974 1.20556 1.46018 1.35480 1.29180 1.23230 1.21900 0.98056 0.85933 0.95232 1.21753 0.95608 0.98568 0.99427 1.19503 0.96769 0.92876 0.95671 1.21084 1.17670 1.12003 1.05458 0.90929 1.25023 0.94548 0.96317 0.97491 1.69910 1.24696 1.21061 1.38379 0.86780 0.79761 0.78040 0.84728 1.20239 1.21333 1.18918 1.21210 0.98446 0.99076 0.92259 1.19778 1.00334 0.88450 1.00577 1.20354 1.04099 0.86415 0.94444 1.84500 1.67876 1.21880 1.36128 0.91559 0.91945 0.90498 0.88315 0.87086 0.83915 0.73493 0.75009 0.90892 0.90920 0.91761 0.91720 0.96218 0.96653 0.92651 0.82296 0.83957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.89 37.15 0.37 -0.11 16 2 C -0.03 -0.13 6.56 -27.89 -0.18 -0.32 16 3 C 0.25 2.15 7.49 -13.09 -0.10 2.05 16 4 N -0.48 -5.14 11.34 -8.71 -0.10 -5.24 16 5 C 0.04 0.44 7.23 -84.71 -0.61 -0.17 16 6 C -0.09 -0.83 10.01 -39.06 -0.39 -1.22 16 7 C 0.15 1.44 6.29 -83.73 -0.53 0.91 16 8 N -0.65 -6.04 5.32 -10.30 -0.05 -6.09 16 9 C 0.51 5.83 7.73 -11.64 -0.09 5.74 16 10 O -0.50 -6.30 13.89 5.46 0.08 -6.22 16 11 C 0.50 6.53 7.89 -11.63 -0.09 6.44 16 12 O -0.52 -7.77 16.48 5.49 0.09 -7.68 16 13 N -0.69 -8.96 5.55 -60.77 -0.34 -9.29 16 14 C 0.11 1.67 5.67 -4.05 -0.02 1.64 16 15 C -0.12 -2.05 5.27 -26.73 -0.14 -2.19 16 16 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 17 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 18 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 21 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 25 C -0.09 -0.86 8.67 -39.33 -0.34 -1.20 16 26 C -0.07 -0.64 10.05 -39.57 -0.40 -1.04 16 27 C 0.00 -0.03 7.43 -38.62 -0.29 -0.32 16 28 O -0.21 -2.07 10.77 3.45 0.04 -2.03 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.10 8.14 -51.92 -0.42 -0.32 16 32 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 35 H 0.43 3.29 8.30 -40.82 -0.34 2.95 16 36 H 0.41 4.86 7.94 -40.82 -0.32 4.54 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 42 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 44 H 0.16 1.52 6.20 -52.49 -0.33 1.20 16 45 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -33.97 387.79 -7.69 -41.66 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.99 Total: 2.17 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -3.36 Total: -3.10 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.28 Total: -47.26 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.20 Total: -15.93 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.97 -7.69 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172558070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.665 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds