Wall clock time and date at job start Wed Apr 1 2020 03:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.53449 * 2 1 4 4 C 1.38364 * 119.85270 * 89.30212 * 3 2 1 5 5 C 1.37949 * 120.14577 * 179.97438 * 4 3 2 6 6 C 1.39575 * 119.85507 * 0.02562 * 5 4 3 7 7 C 1.47841 * 120.14825 * 179.72736 * 6 5 4 8 8 O 1.21550 * 120.00206 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00166 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00111 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47318 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47301 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47076 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00328 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99916 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99903 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00095 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46951 * 60.00132 * 17 15 13 19 19 H 1.48504 * 109.47113 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47294 * 300.00023 * 17 15 13 21 21 C 1.39588 * 119.70982 * 0.02562 * 6 5 4 22 22 C 1.37951 * 119.84935 * 359.97438 * 21 6 5 23 23 N 1.47310 * 110.59906 * 122.83303 * 2 1 3 24 24 C 1.34868 * 106.44013 * 118.72978 * 23 2 1 25 25 O 1.21535 * 123.72810 * 179.97438 * 24 23 2 26 26 N 1.33790 * 112.49813 * 359.86412 * 24 23 2 27 27 C 1.34773 * 111.64689 * 0.08629 * 26 24 23 28 28 O 1.21229 * 127.15636 * 180.02562 * 27 26 24 29 29 H 1.08998 * 109.47378 * 59.99521 * 1 2 3 30 30 H 1.08998 * 109.46877 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46638 * 299.99477 * 1 2 3 32 32 H 1.08004 * 119.92502 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.07899 * 180.02562 * 5 4 3 34 34 H 0.97000 * 120.00217 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47205 * 299.99661 * 10 9 7 36 36 H 1.09002 * 109.47112 * 59.99295 * 10 9 7 37 37 H 1.08996 * 109.47298 * 299.99854 * 11 10 9 38 38 H 1.09002 * 109.47014 * 59.99958 * 11 10 9 39 39 H 1.09004 * 109.46813 * 299.99954 * 12 11 10 40 40 H 1.09002 * 109.46978 * 60.00111 * 12 11 10 41 41 H 0.97006 * 119.99616 * 179.97438 * 16 15 13 42 42 H 1.07994 * 120.07087 * 179.97438 * 21 6 5 43 43 H 1.08006 * 119.92607 * 180.02562 * 22 21 6 44 44 H 0.97003 * 126.68855 * 298.64394 * 23 2 1 45 45 H 0.97003 * 124.17781 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.2865 2.0614 1.2000 5 6 2.7708 3.3530 1.2070 6 6 3.0305 4.0043 0.0002 7 6 3.5439 5.3907 0.0001 8 8 3.7404 5.9662 1.0526 9 7 3.7931 6.0170 -1.1671 10 6 4.3014 7.3910 -1.1671 11 6 4.4980 7.8621 -2.6094 12 6 5.0282 9.2973 -2.6095 13 6 5.2212 9.7614 -4.0302 14 1 4.9894 9.0988 -4.8510 15 6 5.6938 11.0319 -4.2821 16 7 5.9766 11.8385 -3.2826 17 14 5.9338 11.6070 -6.0431 18 1 4.6348 11.5585 -6.7610 19 1 6.4483 13.0000 -6.0432 20 1 6.9097 10.7194 -6.7251 21 6 2.7974 3.3432 -1.2069 22 6 2.3129 2.0515 -1.1999 23 7 2.0483 -0.7476 1.1586 24 6 2.7646 -1.7759 0.6600 25 8 3.3357 -2.5976 1.3497 26 7 2.7744 -1.7918 -0.6777 27 6 2.0633 -0.7692 -1.1924 28 8 1.8865 -0.5172 -2.3649 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.0856 1.5561 2.1331 33 1 2.9487 3.8593 2.1443 34 1 3.6360 5.5581 -2.0070 35 1 3.5859 8.0431 -0.6660 36 1 5.2552 7.4257 -0.6407 37 1 5.2136 7.2100 -3.1103 38 1 3.5443 7.8274 -3.1362 39 1 4.3122 9.9491 -2.1088 40 1 5.9818 9.3324 -2.0827 41 1 6.3094 12.7323 -3.4600 42 1 2.9958 3.8417 -2.1441 43 1 2.1325 1.5386 -2.1331 44 1 1.9031 -0.5393 2.0949 45 1 3.2370 -2.4568 -1.2114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177824072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:06 Heat of formation + Delta-G solvation = -65.345689 kcal Electronic energy + Delta-G solvation = -28618.735403 eV Core-core repulsion = 24408.533405 eV Total energy + Delta-G solvation = -4210.201998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.19728 -40.36631 -39.34178 -38.65091 -36.91531 -35.53245 -35.03896 -33.43402 -32.25025 -31.69175 -30.98628 -30.08991 -26.94250 -25.84398 -24.26260 -23.78324 -22.85641 -22.64543 -21.34122 -20.75644 -20.14254 -18.98763 -18.11094 -17.49806 -17.23459 -16.63359 -16.56670 -16.33866 -15.77911 -15.66055 -15.41332 -15.08068 -14.85000 -14.68324 -14.49399 -14.40240 -13.99701 -13.80750 -13.67889 -13.22245 -13.15842 -12.81669 -12.30757 -12.27678 -11.92271 -11.77245 -11.75982 -11.41394 -10.97691 -10.90759 -10.78093 -10.76952 -10.65217 -10.23583 -10.05763 -9.90834 -9.45806 -9.44501 -9.35431 -9.16305 -8.85648 -8.39182 -6.03894 -4.07234 0.32938 0.90699 0.95633 1.78161 2.37273 2.40600 2.70683 3.21308 3.23010 3.30676 3.35624 3.37621 3.52534 3.64741 4.08427 4.32854 4.42303 4.51759 4.58443 4.66191 4.84101 4.87759 4.90781 5.07493 5.24468 5.31495 5.31802 5.41268 5.56840 5.64089 5.71711 5.82212 5.85548 5.96607 6.10070 6.10955 6.27998 6.34376 6.39439 6.54212 6.73250 6.76053 6.95050 7.52084 7.57364 7.60247 7.72522 7.94263 8.22631 8.35478 8.99060 9.57013 11.07258 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.001734 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.626789 B =16146.947841 C =16910.015363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.164 3.836 3 C -0.082 4.082 4 C -0.104 4.104 5 C -0.059 4.059 6 C -0.115 4.115 7 C 0.548 3.452 8 O -0.538 6.538 9 N -0.718 5.718 10 C 0.115 3.885 11 C -0.122 4.122 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.081 4.081 22 C -0.115 4.115 23 N -0.716 5.716 24 C 0.708 3.292 25 O -0.538 6.538 26 N -0.677 5.677 27 C 0.538 3.462 28 O -0.454 6.454 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.142 0.858 34 H 0.398 0.602 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.135 0.865 43 H 0.146 0.854 44 H 0.442 0.558 45 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.762 -29.109 8.133 32.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.073 3.927 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.078 4.078 6 C -0.118 4.118 7 C 0.335 3.665 8 O -0.416 6.416 9 N -0.369 5.369 10 C -0.007 4.007 11 C -0.160 4.160 12 C -0.014 4.014 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.099 4.099 22 C -0.133 4.133 23 N -0.382 5.382 24 C 0.407 3.593 25 O -0.411 6.411 26 N -0.349 5.349 27 C 0.323 3.677 28 O -0.322 6.322 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.147 0.853 33 H 0.160 0.840 34 H 0.233 0.767 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.288 0.712 45 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -12.372 -28.727 8.677 32.460 hybrid contribution 0.307 0.020 -1.234 1.271 sum -12.064 -28.707 7.444 32.017 Atomic orbital electron populations 1.22043 0.88747 1.04076 1.05361 1.20181 0.97467 0.90318 0.84693 1.19490 1.01279 0.92921 0.94714 1.20750 0.99861 0.94641 0.96975 1.21269 0.94709 0.93562 0.98238 1.20237 1.02383 0.94834 0.94385 1.18251 0.78311 0.85641 0.84340 1.90782 1.52578 1.67067 1.31171 1.46166 1.66048 1.16720 1.07947 1.21715 0.99173 0.79804 0.99990 1.21905 1.00923 1.01001 0.92136 1.19026 0.96440 0.88506 0.97383 1.21156 1.44026 0.98752 0.92275 0.92682 1.25033 0.95484 0.96838 0.97116 1.69956 1.44700 1.07823 1.30738 0.86633 0.78504 0.77740 0.84961 1.20234 1.21264 1.20244 1.21379 0.96610 0.94395 0.97555 1.21275 0.98682 0.95124 0.98263 1.45738 1.54813 1.28577 1.09056 1.15890 0.79513 0.82238 0.81676 1.91084 1.47965 1.41291 1.60776 1.44294 1.51110 1.30719 1.08733 1.20546 0.77166 0.80329 0.89663 1.90830 1.56508 1.68376 1.16460 0.89201 0.90790 0.89658 0.85347 0.83985 0.76694 0.91459 0.91492 0.92653 0.92634 0.96228 0.96242 0.92850 0.84769 0.83637 0.71219 0.72193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.45 8.96 37.16 0.33 -0.12 16 2 C 0.16 0.81 1.16 -133.25 -0.15 0.66 16 3 C -0.08 -0.54 4.89 -104.53 -0.51 -1.05 16 4 C -0.10 -0.68 9.33 -39.64 -0.37 -1.05 16 5 C -0.06 -0.55 9.60 -39.19 -0.38 -0.92 16 6 C -0.12 -1.25 5.87 -104.97 -0.62 -1.87 16 7 C 0.55 7.91 7.77 -12.33 -0.10 7.82 16 8 O -0.54 -9.74 16.35 5.32 0.09 -9.65 16 9 N -0.72 -9.93 5.51 -61.25 -0.34 -10.27 16 10 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 11 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 14 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.08 -0.71 9.54 -39.18 -0.37 -1.08 16 22 C -0.12 -0.89 9.16 -39.64 -0.36 -1.25 16 23 N -0.72 -3.22 5.35 -53.93 -0.29 -3.51 16 24 C 0.71 5.00 9.00 -87.71 -0.79 4.21 16 25 O -0.54 -5.77 18.04 5.34 0.10 -5.67 16 26 N -0.68 -3.80 5.70 -15.71 -0.09 -3.89 16 27 C 0.54 3.43 6.98 -10.55 -0.07 3.36 16 28 O -0.45 -3.84 15.89 5.60 0.09 -3.75 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.13 0.48 7.00 -52.48 -0.37 0.11 16 33 H 0.14 1.35 7.65 -52.49 -0.40 0.95 16 34 H 0.40 4.36 6.51 -40.82 -0.27 4.10 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.13 0.96 6.41 -52.49 -0.34 0.63 16 43 H 0.15 1.09 5.67 -52.48 -0.30 0.80 16 44 H 0.44 1.09 8.12 -40.82 -0.33 0.76 16 45 H 0.44 1.68 8.96 -40.82 -0.37 1.31 16 LS Contribution 383.39 15.07 5.78 5.78 Total: -1.00 -35.82 383.39 -8.77 -44.59 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.71 Total: 0.53 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -4.10 Total: -4.60 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.02 Total: -43.51 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.27 Total: -19.07 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.82 -8.77 -44.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177824072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.760 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds