Wall clock time and date at job start Wed Apr 1 2020 03:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.53449 * 2 1 4 4 C 1.38364 * 119.85270 * 89.30212 * 3 2 1 5 5 C 1.37949 * 120.14577 * 179.97438 * 4 3 2 6 6 C 1.39575 * 119.85507 * 0.02562 * 5 4 3 7 7 C 1.47841 * 120.14825 * 179.72736 * 6 5 4 8 8 O 1.21550 * 120.00206 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00166 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00111 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47318 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47301 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47076 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00328 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99916 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99903 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00095 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46951 * 60.00132 * 17 15 13 19 19 H 1.48504 * 109.47113 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47294 * 300.00023 * 17 15 13 21 21 C 1.39588 * 119.70982 * 0.02562 * 6 5 4 22 22 C 1.37951 * 119.84935 * 359.97438 * 21 6 5 23 23 N 1.47310 * 110.59906 * 122.83303 * 2 1 3 24 24 C 1.34868 * 106.44013 * 118.72978 * 23 2 1 25 25 O 1.21535 * 123.72810 * 179.97438 * 24 23 2 26 26 N 1.33790 * 112.49813 * 359.86412 * 24 23 2 27 27 C 1.34773 * 111.64689 * 0.08629 * 26 24 23 28 28 O 1.21229 * 127.15636 * 180.02562 * 27 26 24 29 29 H 1.08998 * 109.47378 * 59.99521 * 1 2 3 30 30 H 1.08998 * 109.46877 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46638 * 299.99477 * 1 2 3 32 32 H 1.08004 * 119.92502 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.07899 * 180.02562 * 5 4 3 34 34 H 0.97000 * 120.00217 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47205 * 299.99661 * 10 9 7 36 36 H 1.09002 * 109.47112 * 59.99295 * 10 9 7 37 37 H 1.08996 * 109.47298 * 299.99854 * 11 10 9 38 38 H 1.09002 * 109.47014 * 59.99958 * 11 10 9 39 39 H 1.09004 * 109.46813 * 299.99954 * 12 11 10 40 40 H 1.09002 * 109.46978 * 60.00111 * 12 11 10 41 41 H 0.97006 * 119.99616 * 179.97438 * 16 15 13 42 42 H 1.07994 * 120.07087 * 179.97438 * 21 6 5 43 43 H 1.08006 * 119.92607 * 180.02562 * 22 21 6 44 44 H 0.97003 * 126.68855 * 298.64394 * 23 2 1 45 45 H 0.97003 * 124.17781 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.2865 2.0614 1.2000 5 6 2.7708 3.3530 1.2070 6 6 3.0305 4.0043 0.0002 7 6 3.5439 5.3907 0.0001 8 8 3.7404 5.9662 1.0526 9 7 3.7931 6.0170 -1.1671 10 6 4.3014 7.3910 -1.1671 11 6 4.4980 7.8621 -2.6094 12 6 5.0282 9.2973 -2.6095 13 6 5.2212 9.7614 -4.0302 14 1 4.9894 9.0988 -4.8510 15 6 5.6938 11.0319 -4.2821 16 7 5.9766 11.8385 -3.2826 17 14 5.9338 11.6070 -6.0431 18 1 4.6348 11.5585 -6.7610 19 1 6.4483 13.0000 -6.0432 20 1 6.9097 10.7194 -6.7251 21 6 2.7974 3.3432 -1.2069 22 6 2.3129 2.0515 -1.1999 23 7 2.0483 -0.7476 1.1586 24 6 2.7646 -1.7759 0.6600 25 8 3.3357 -2.5976 1.3497 26 7 2.7744 -1.7918 -0.6777 27 6 2.0633 -0.7692 -1.1924 28 8 1.8865 -0.5172 -2.3649 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.0856 1.5561 2.1331 33 1 2.9487 3.8593 2.1443 34 1 3.6360 5.5581 -2.0070 35 1 3.5859 8.0431 -0.6660 36 1 5.2552 7.4257 -0.6407 37 1 5.2136 7.2100 -3.1103 38 1 3.5443 7.8274 -3.1362 39 1 4.3122 9.9491 -2.1088 40 1 5.9818 9.3324 -2.0827 41 1 6.3094 12.7323 -3.4600 42 1 2.9958 3.8417 -2.1441 43 1 2.1325 1.5386 -2.1331 44 1 1.9031 -0.5393 2.0949 45 1 3.2370 -2.4568 -1.2114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177824072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:05 Heat of formation + Delta-G solvation = -92.524144 kcal Electronic energy + Delta-G solvation = -28619.913949 eV Core-core repulsion = 24408.533405 eV Total energy + Delta-G solvation = -4211.380544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.70663 -41.29394 -40.02645 -39.44294 -37.53955 -37.01746 -35.59041 -35.23539 -33.32410 -32.65019 -31.93415 -30.72027 -28.59549 -26.44593 -25.44407 -24.39526 -24.11887 -23.25049 -22.33374 -22.00557 -21.18670 -19.54162 -19.02032 -18.47521 -18.10920 -17.75440 -17.31183 -17.11746 -16.75248 -16.70583 -16.43755 -16.29785 -15.86261 -15.55038 -15.48198 -15.32501 -15.01938 -14.55639 -14.42624 -14.19336 -13.78430 -13.70859 -13.67049 -13.49809 -13.35325 -12.78892 -12.71380 -12.56641 -12.45733 -12.34734 -12.03583 -11.68374 -11.63857 -11.54201 -11.34815 -11.26564 -10.99662 -10.69389 -10.54614 -10.28133 -10.07636 -9.92041 -8.19255 -6.30743 -0.39293 0.28492 0.41837 1.33071 1.42034 1.44933 1.52747 1.65316 1.87146 2.04957 2.09064 2.42662 2.70419 2.77570 3.11617 3.14407 3.64798 3.71672 3.76418 3.92787 4.12123 4.16500 4.19626 4.26789 4.38068 4.52934 4.58758 4.69501 4.71428 4.92725 4.92962 4.94014 4.98937 5.14523 5.15647 5.17304 5.23520 5.28751 5.37053 5.51615 5.69716 5.70199 5.74648 5.79530 5.83968 6.21981 6.27462 6.47659 6.86461 7.03992 7.12012 7.38742 8.92482 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.001734 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.626789 B =16146.947841 C =16910.015363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.171 3.829 3 C -0.071 4.071 4 C -0.094 4.094 5 C -0.067 4.067 6 C -0.136 4.136 7 C 0.547 3.453 8 O -0.583 6.583 9 N -0.709 5.709 10 C 0.129 3.871 11 C -0.103 4.103 12 C 0.023 3.977 13 C -0.542 4.542 14 H 0.067 0.933 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.078 4.078 22 C -0.118 4.118 23 N -0.699 5.699 24 C 0.709 3.291 25 O -0.576 6.576 26 N -0.671 5.671 27 C 0.539 3.461 28 O -0.474 6.474 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.161 0.839 33 H 0.135 0.865 34 H 0.414 0.586 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.070 0.930 39 H -0.007 1.007 40 H -0.008 1.008 41 H 0.263 0.737 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.453 0.547 45 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.118 -31.264 6.964 35.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.080 3.920 3 C -0.073 4.073 4 C -0.112 4.112 5 C -0.086 4.086 6 C -0.139 4.139 7 C 0.336 3.664 8 O -0.464 6.464 9 N -0.360 5.360 10 C 0.005 3.995 11 C -0.140 4.140 12 C -0.015 4.015 13 C -0.580 4.580 14 H 0.085 0.915 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.096 4.096 22 C -0.136 4.136 23 N -0.366 5.366 24 C 0.408 3.592 25 O -0.452 6.452 26 N -0.342 5.342 27 C 0.324 3.676 28 O -0.343 6.343 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.179 0.821 33 H 0.153 0.847 34 H 0.252 0.748 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.011 0.989 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.165 0.835 43 H 0.168 0.832 44 H 0.302 0.698 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -13.755 -30.910 7.483 34.650 hybrid contribution 0.698 0.618 -0.835 1.252 sum -13.057 -30.292 6.648 33.649 Atomic orbital electron populations 1.22109 0.86742 1.05056 1.06258 1.20186 0.98719 0.88976 0.84115 1.19670 0.99780 0.93481 0.94377 1.20991 0.98369 0.93443 0.98362 1.21347 0.95138 0.94663 0.97458 1.19988 1.04882 0.93077 0.95992 1.18818 0.77245 0.86860 0.83460 1.90753 1.54604 1.68445 1.32642 1.45925 1.65751 1.15400 1.08967 1.21291 0.98279 0.81537 0.98383 1.21611 1.01559 0.97353 0.93527 1.18944 0.94674 0.91889 0.95944 1.21650 1.43562 0.99203 0.93544 0.91491 1.26031 0.95176 0.97142 1.01830 1.70108 1.45802 1.08240 1.33296 0.85468 0.78981 0.77121 0.79274 1.18981 1.21226 1.19082 1.21483 0.96158 0.94764 0.97242 1.21367 0.98515 0.94701 0.98981 1.45679 1.53764 1.27515 1.09614 1.15962 0.79242 0.82212 0.81758 1.91068 1.49666 1.42858 1.61616 1.44242 1.50760 1.30762 1.08429 1.20715 0.76823 0.80363 0.89677 1.90828 1.57207 1.68923 1.17374 0.89234 0.89843 0.87896 0.82124 0.84748 0.74788 0.92833 0.93010 0.91315 0.91168 0.98853 0.98957 0.92835 0.83472 0.83153 0.69848 0.71412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.41 8.96 71.98 0.65 0.23 16 2 C 0.17 1.18 1.16 2.24 0.00 1.18 16 3 C -0.07 -0.74 4.89 -19.81 -0.10 -0.83 16 4 C -0.09 -0.97 9.33 22.23 0.21 -0.77 16 5 C -0.07 -1.17 9.60 22.52 0.22 -0.95 16 6 C -0.14 -2.85 5.87 -20.09 -0.12 -2.97 16 7 C 0.55 15.91 7.77 86.78 0.67 16.58 16 8 O -0.58 -21.85 16.35 -3.87 -0.06 -21.91 16 9 N -0.71 -19.36 5.51 -465.98 -2.57 -21.93 16 10 C 0.13 4.49 5.67 86.38 0.49 4.98 16 11 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 12 C 0.02 1.19 4.97 29.85 0.15 1.34 16 13 C -0.54 -29.97 9.11 25.60 0.23 -29.73 16 14 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 15 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 16 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 17 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 19 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 C -0.08 -1.22 9.54 22.53 0.21 -1.01 16 22 C -0.12 -1.54 9.16 22.23 0.20 -1.33 16 23 N -0.70 -4.28 5.35 -442.77 -2.37 -6.65 16 24 C 0.71 8.64 9.00 179.33 1.61 10.26 16 25 O -0.58 -11.67 18.04 -3.83 -0.07 -11.74 16 26 N -0.67 -6.32 5.70 -440.86 -2.51 -8.83 16 27 C 0.54 5.66 6.98 87.94 0.61 6.28 16 28 O -0.47 -7.09 15.89 -2.87 -0.05 -7.14 16 29 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.10 -0.02 8.14 -2.38 -0.02 -0.04 16 32 H 0.16 0.58 7.00 -2.91 -0.02 0.56 16 33 H 0.13 2.53 7.65 -2.91 -0.02 2.51 16 34 H 0.41 8.48 6.51 -92.71 -0.60 7.88 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 42 H 0.15 1.81 6.41 -2.91 -0.02 1.79 16 43 H 0.15 1.90 5.67 -2.91 -0.02 1.89 16 44 H 0.45 0.71 8.12 -92.71 -0.75 -0.04 16 45 H 0.44 2.82 8.96 -92.71 -0.83 1.99 16 Total: -1.00 -79.49 383.39 -0.76 -80.24 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -1.11 Total: 9.18 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.67 Total: -0.22 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -7.16 Total: -93.97 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -0.18 Total: -40.79 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -79.49 -0.76 -80.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177824072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.283 kcal (2) G-P(sol) polarization free energy of solvation -79.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds