Wall clock time and date at job start Wed Apr 1 2020 03:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 110.53463 * 2 1 4 4 C 1.38362 * 119.85120 * 272.82799 * 3 2 1 5 5 C 1.37958 * 120.14724 * 180.02562 * 4 3 2 6 6 C 1.39587 * 119.84761 * 359.97438 * 5 4 3 7 7 C 1.47843 * 120.13843 * 179.97438 * 6 5 4 8 8 O 1.21556 * 120.00457 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99831 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00376 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99751 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00094 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47116 * 59.99536 * 17 15 13 19 19 H 1.48500 * 109.46585 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46730 * 299.99515 * 17 15 13 21 21 C 1.39574 * 119.71276 * 0.25514 * 6 5 4 22 22 C 1.37958 * 119.85006 * 359.51401 * 21 6 5 23 23 N 1.47310 * 110.73184 * 237.07768 * 2 1 3 24 24 C 1.34535 * 106.61974 * 241.41279 * 23 2 1 25 25 O 1.21533 * 123.77150 * 180.02562 * 24 23 2 26 26 N 1.33793 * 112.45631 * 0.02562 * 24 23 2 27 27 C 1.34773 * 111.64302 * 359.97438 * 26 24 23 28 28 O 1.21231 * 127.15412 * 180.02562 * 27 26 24 29 29 H 1.08999 * 109.46471 * 59.99920 * 1 2 3 30 30 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46644 * 300.00464 * 1 2 3 32 32 H 1.08005 * 119.92840 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.07630 * 180.02562 * 5 4 3 34 34 H 0.97003 * 119.99640 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.46596 * 59.99898 * 10 9 7 36 36 H 1.09002 * 109.47129 * 300.00253 * 10 9 7 37 37 H 1.09001 * 109.46652 * 60.00269 * 11 10 9 38 38 H 1.08992 * 109.47514 * 300.00358 * 11 10 9 39 39 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 40 40 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 41 41 H 0.97000 * 120.00333 * 179.97438 * 16 15 13 42 42 H 1.08000 * 120.07159 * 179.72732 * 21 6 5 43 43 H 1.08000 * 119.92545 * 180.23178 * 22 21 6 44 44 H 0.96997 * 126.69135 * 61.38042 * 23 2 1 45 45 H 0.97001 * 124.17683 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.2448 2.0769 -1.1986 5 6 2.7289 3.3688 -1.2057 6 6 3.0305 4.0043 -0.0001 7 6 3.5502 5.3884 -0.0003 8 8 3.7152 5.9756 -1.0517 9 7 3.8410 5.9991 1.1654 10 6 4.3565 7.3705 1.1654 11 6 4.6017 7.8233 2.6061 12 6 5.1406 9.2552 2.6059 13 6 5.3827 9.7010 4.0250 14 1 5.1736 9.0299 4.8449 15 6 5.8713 10.9655 4.2765 16 7 6.1265 11.7825 3.2780 17 14 6.1721 11.5178 6.0355 18 1 7.1639 10.6163 6.6746 19 1 6.6950 12.9077 6.0352 20 1 4.8968 11.4684 6.7946 21 6 2.8450 3.3254 1.2052 22 6 2.3557 2.0355 1.1984 23 7 2.0515 -0.7488 -1.1565 24 6 2.7647 -1.7759 -0.6600 25 8 3.3365 -2.5971 -1.3497 26 7 2.7739 -1.7923 0.6778 27 6 2.0629 -0.7695 1.1923 28 8 1.8865 -0.5172 2.3649 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8899 32 1 2.0106 1.5841 -2.1307 33 1 2.8733 3.8875 -2.1419 34 1 3.7097 5.5304 2.0045 35 1 3.6286 8.0321 0.6958 36 1 5.2927 7.4067 0.6084 37 1 5.3294 7.1616 3.0760 38 1 3.6653 7.7871 3.1627 39 1 6.0772 9.2909 2.0494 40 1 4.4132 9.9171 2.1359 41 1 6.4698 12.6723 3.4549 42 1 3.0807 3.8100 2.1411 43 1 2.2081 1.5103 2.1306 44 1 1.9083 -0.5420 -2.0932 45 1 3.2360 -2.4576 1.2114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177824080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:09 Heat of formation + Delta-G solvation = -65.114904 kcal Electronic energy + Delta-G solvation = -28621.198922 eV Core-core repulsion = 24411.006932 eV Total energy + Delta-G solvation = -4210.191990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.21750 -40.36824 -39.34966 -38.64832 -36.91772 -35.53226 -35.03767 -33.43452 -32.26469 -31.68578 -31.00076 -30.09375 -26.94180 -25.85046 -24.26456 -23.77942 -22.85826 -22.64399 -21.35139 -20.75806 -20.14418 -18.99047 -18.11696 -17.49444 -17.23522 -16.63722 -16.56477 -16.33715 -15.77807 -15.66929 -15.41410 -15.10092 -14.85095 -14.67343 -14.49483 -14.41004 -13.99721 -13.79660 -13.68014 -13.22481 -13.15924 -12.81862 -12.30770 -12.27985 -11.92415 -11.77379 -11.76188 -11.41436 -10.97413 -10.90760 -10.77838 -10.76760 -10.65212 -10.24132 -10.05789 -9.90845 -9.45925 -9.44557 -9.35785 -9.16278 -8.85733 -8.39180 -6.03858 -4.07235 0.32848 0.90399 0.95583 1.78752 2.37319 2.41088 2.70676 3.21142 3.22415 3.30690 3.35623 3.37636 3.52354 3.64550 4.08384 4.32950 4.42313 4.51619 4.58664 4.66148 4.83821 4.87524 4.90585 5.07314 5.24365 5.31350 5.31807 5.41392 5.56693 5.64019 5.71689 5.82076 5.85332 5.96433 6.10004 6.10597 6.28422 6.34270 6.39345 6.54187 6.73175 6.76017 6.95034 7.52405 7.57277 7.60264 7.72507 7.94273 8.22554 8.35458 8.99067 9.57018 11.07298 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.001736 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.330013 B =16122.356235 C =16885.885140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.165 3.835 3 C -0.082 4.082 4 C -0.104 4.104 5 C -0.059 4.059 6 C -0.115 4.115 7 C 0.548 3.452 8 O -0.538 6.538 9 N -0.718 5.718 10 C 0.115 3.885 11 C -0.122 4.122 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.081 4.081 22 C -0.116 4.116 23 N -0.715 5.715 24 C 0.708 3.292 25 O -0.539 6.539 26 N -0.678 5.678 27 C 0.538 3.462 28 O -0.454 6.454 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.142 0.858 34 H 0.398 0.602 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.135 0.865 43 H 0.146 0.854 44 H 0.442 0.558 45 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.127 -28.964 -8.135 32.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.074 3.926 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.078 4.078 6 C -0.118 4.118 7 C 0.335 3.665 8 O -0.416 6.416 9 N -0.369 5.369 10 C -0.007 4.007 11 C -0.160 4.160 12 C -0.014 4.014 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.099 4.099 22 C -0.134 4.134 23 N -0.380 5.380 24 C 0.407 3.593 25 O -0.412 6.412 26 N -0.349 5.349 27 C 0.323 3.677 28 O -0.322 6.322 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.147 0.853 33 H 0.160 0.840 34 H 0.233 0.767 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.287 0.713 45 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -12.757 -28.572 -8.677 32.472 hybrid contribution 0.352 0.000 1.234 1.283 sum -12.406 -28.572 -7.442 32.026 Atomic orbital electron populations 1.22042 0.88729 1.04082 1.05374 1.20187 0.97460 0.90307 0.84682 1.19476 1.01263 0.92899 0.94735 1.20749 0.99955 0.94550 0.96961 1.21274 0.94610 0.93664 0.98223 1.20237 1.02358 0.94824 0.94409 1.18252 0.78293 0.85675 0.84326 1.90784 1.53350 1.66268 1.31200 1.46167 1.65635 1.16980 1.08097 1.21717 0.99043 0.79925 0.99996 1.21904 1.00812 1.01091 0.92155 1.19027 0.96379 0.88567 0.97386 1.21156 1.43642 0.99003 0.92405 0.92681 1.25033 0.95542 0.96783 0.97110 1.69952 1.44786 1.07705 1.30780 0.86632 0.78568 0.77693 0.84949 1.20244 1.21264 1.20233 1.21378 0.96705 0.94282 0.97560 1.21295 0.98515 0.95315 0.98291 1.45666 1.54751 1.28500 1.09123 1.15810 0.79560 0.82265 0.81685 1.91086 1.47975 1.41380 1.60757 1.44305 1.51127 1.30693 1.08767 1.20549 0.77169 0.80344 0.89669 1.90829 1.56514 1.68384 1.16473 0.89646 0.90787 0.89184 0.85335 0.83976 0.76695 0.91461 0.91487 0.92659 0.92628 0.96241 0.96226 0.92846 0.84770 0.83629 0.71261 0.72207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.45 8.97 37.16 0.33 -0.12 16 2 C 0.16 0.81 1.16 -133.24 -0.15 0.66 16 3 C -0.08 -0.54 4.90 -104.54 -0.51 -1.05 16 4 C -0.10 -0.68 9.33 -39.64 -0.37 -1.05 16 5 C -0.06 -0.55 9.60 -39.18 -0.38 -0.92 16 6 C -0.12 -1.25 5.87 -104.97 -0.62 -1.87 16 7 C 0.55 7.91 7.77 -12.33 -0.10 7.81 16 8 O -0.54 -9.73 16.35 5.32 0.09 -9.64 16 9 N -0.72 -9.93 5.51 -61.25 -0.34 -10.27 16 10 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 11 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 C -0.08 -0.71 9.54 -39.19 -0.37 -1.08 16 22 C -0.12 -0.90 9.16 -39.64 -0.36 -1.26 16 23 N -0.72 -3.22 5.37 -54.02 -0.29 -3.51 16 24 C 0.71 5.01 8.99 -88.01 -0.79 4.21 16 25 O -0.54 -5.79 18.04 5.34 0.10 -5.69 16 26 N -0.68 -3.81 5.70 -15.79 -0.09 -3.90 16 27 C 0.54 3.43 6.95 -10.55 -0.07 3.36 16 28 O -0.45 -3.84 15.87 5.60 0.09 -3.75 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.13 0.47 7.09 -52.48 -0.37 0.10 16 33 H 0.14 1.35 7.65 -52.49 -0.40 0.95 16 34 H 0.40 4.36 6.51 -40.82 -0.27 4.10 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.13 0.97 6.41 -52.49 -0.34 0.63 16 43 H 0.15 1.11 5.59 -52.49 -0.29 0.81 16 44 H 0.44 1.09 8.18 -40.82 -0.33 0.76 16 45 H 0.44 1.68 8.96 -40.82 -0.37 1.32 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -35.83 383.42 -8.77 -44.60 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.71 Total: 0.53 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -4.11 Total: -4.60 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.02 Total: -43.53 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.27 Total: -19.09 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.83 -8.77 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177824080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.511 kcal (2) G-P(sol) polarization free energy of solvation -35.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds