Wall clock time and date at job start Wed Apr 1 2020 02:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35280 * 126.70378 * 2 1 4 4 C 1.41960 * 103.95529 * 179.97438 * 3 2 1 5 5 N 1.39880 * 126.88589 * 179.97438 * 4 3 2 6 6 C 1.36740 * 124.94561 * 46.94852 * 5 4 3 7 7 C 1.50697 * 125.56542 * 0.24056 * 6 5 4 8 8 C 1.34413 * 108.87173 * 179.97438 * 6 5 4 9 9 C 1.46726 * 106.51912 * 359.97438 * 8 6 5 10 10 C 1.47257 * 126.89312 * 179.97438 * 9 8 6 11 11 O 1.21635 * 119.99960 * 180.02562 * 10 9 8 12 12 N 1.34780 * 120.00049 * 0.03074 * 10 9 8 13 13 C 1.47067 * 136.05292 * 359.62690 * 12 10 9 14 14 C 1.53756 * 87.88316 * 152.96569 * 13 12 10 15 15 O 1.42901 * 114.39283 * 272.67340 * 14 13 12 16 16 C 1.50710 * 114.26516 * 139.79140 * 14 13 12 17 17 H 1.07997 * 119.99819 * 266.47144 * 16 14 13 18 18 C 1.37882 * 119.99855 * 86.47634 * 16 14 13 19 19 N 1.31511 * 119.99603 * 179.97438 * 18 16 14 20 20 Si 1.86798 * 119.99964 * 359.97438 * 18 16 14 21 21 H 1.48496 * 109.47509 * 90.00283 * 20 18 16 22 22 H 1.48507 * 109.46884 * 210.00545 * 20 18 16 23 23 H 1.48504 * 109.47303 * 329.99847 * 20 18 16 24 24 C 1.47060 * 136.05761 * 180.02562 * 12 10 9 25 25 C 1.35507 * 124.95457 * 226.92452 * 5 4 3 26 26 C 1.50705 * 125.85377 * 359.97438 * 25 5 4 27 27 N 1.30662 * 106.23234 * 0.23699 * 4 3 2 28 28 O 1.20920 * 111.48476 * 359.57828 * 27 4 3 29 29 H 1.08999 * 109.46825 * 89.99686 * 1 2 3 30 30 H 1.08991 * 109.47530 * 210.00344 * 1 2 3 31 31 H 1.09005 * 109.46852 * 330.00493 * 1 2 3 32 32 H 1.07996 * 128.02414 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47281 * 274.92112 * 7 6 5 34 34 H 1.09004 * 109.46816 * 34.92365 * 7 6 5 35 35 H 1.09004 * 109.47259 * 154.92095 * 7 6 5 36 36 H 1.08002 * 126.74316 * 180.02562 * 8 6 5 37 37 H 1.09003 * 113.46225 * 267.69600 * 13 12 10 38 38 H 1.08995 * 113.46850 * 38.13683 * 13 12 10 39 39 H 0.96702 * 113.99634 * 273.58701 * 15 14 13 40 40 H 0.97006 * 119.99257 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.46772 * 321.86034 * 24 12 10 42 42 H 1.09002 * 113.47072 * 92.24705 * 24 12 10 43 43 H 1.08996 * 109.47444 * 270.00532 * 26 25 5 44 44 H 1.09002 * 109.46777 * 30.00349 * 26 25 5 45 45 H 1.08998 * 109.46908 * 150.00103 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0846 0.0000 4 6 3.6247 0.5357 0.0006 5 7 4.8316 1.2428 0.0004 6 6 5.1205 2.2995 0.8188 7 6 4.1982 2.8795 1.8598 8 6 6.3636 2.7326 0.5471 9 6 6.8803 1.8728 -0.5237 10 6 8.2045 1.9557 -1.1625 11 8 8.5040 1.1739 -2.0449 12 7 9.0846 2.8977 -0.7694 13 6 9.0986 3.9876 0.2179 14 6 10.6271 3.8333 0.2819 15 8 11.0832 2.8616 1.2252 16 6 11.3785 5.1374 0.3596 17 1 11.7397 5.6070 -0.5434 18 6 11.6048 5.7308 1.5834 19 7 12.2610 6.8686 1.6511 20 14 10.9795 4.9187 3.1451 21 1 12.0193 4.0014 3.6765 22 1 10.6751 5.9616 4.1575 23 1 9.7468 4.1478 2.8427 24 6 10.4508 3.2926 -1.1440 25 6 5.8851 0.9802 -0.8105 26 6 5.9494 -0.1100 -1.8491 27 7 3.4765 -0.7625 -0.0043 28 8 2.3083 -1.0749 0.0006 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 2.0311 2.1264 -0.0004 33 1 3.5323 3.6046 1.3919 34 1 3.6077 2.0803 2.3079 35 1 4.7873 3.3732 2.6327 36 1 6.8809 3.5521 1.0240 37 1 8.7757 4.9459 -0.1889 38 1 8.5958 3.7343 1.1512 39 1 11.1931 3.2056 2.1222 40 1 12.4199 7.2862 2.5121 41 1 11.1002 2.4471 -1.3711 42 1 10.4842 4.0672 -1.9101 43 1 6.3444 -1.0197 -1.3969 44 1 4.9489 -0.3018 -2.2368 45 1 6.6013 0.2031 -2.6646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186831424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:58 Heat of formation + Delta-G solvation = 90.620728 kcal Electronic energy + Delta-G solvation = -30343.073417 eV Core-core repulsion = 26139.634630 eV Total energy + Delta-G solvation = -4203.438786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.53325 -41.60381 -39.58666 -37.42445 -34.98595 -34.51669 -34.04624 -32.74999 -32.52434 -30.97533 -29.44166 -28.68663 -28.36432 -25.92249 -25.36244 -24.47377 -24.03429 -22.84443 -21.17794 -20.16164 -19.28613 -18.29504 -18.03825 -17.57971 -17.37784 -16.82790 -16.31904 -15.81769 -15.51760 -15.14455 -14.63479 -14.50195 -14.13287 -13.98083 -13.83714 -13.64118 -13.51660 -13.30386 -13.25086 -13.04589 -12.95590 -12.64176 -12.57943 -12.47408 -12.34748 -12.25820 -12.05956 -11.69788 -11.46422 -11.07453 -10.92401 -10.81432 -10.52411 -10.07878 -9.94400 -9.68328 -9.20348 -9.00457 -8.70903 -8.60885 -8.16182 -7.83720 -6.40782 -4.46048 0.82914 1.27745 1.99037 2.10196 2.36450 2.57207 3.01228 3.05280 3.15897 3.57610 3.85505 3.92768 4.04377 4.07798 4.35600 4.61344 4.66150 4.70091 4.77153 4.81450 4.99457 5.02497 5.06292 5.14545 5.21005 5.28330 5.31382 5.39507 5.55036 5.62360 5.65983 5.68006 5.83411 5.92350 6.11771 6.15984 6.24625 6.35927 6.43727 6.56947 6.66115 6.74140 6.92455 7.10114 7.22564 7.71157 8.03466 8.44263 8.55528 8.63526 8.81035 9.17195 10.71352 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018733 B = 0.002817 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.349379 B = 9935.845932 C =10895.624147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.017 4.017 3 C -0.225 4.225 4 C 0.233 3.767 5 N -0.376 5.376 6 C 0.016 3.984 7 C -0.082 4.082 8 C -0.147 4.147 9 C -0.201 4.201 10 C 0.614 3.386 11 O -0.564 6.564 12 N -0.629 5.629 13 C 0.061 3.939 14 C 0.194 3.806 15 O -0.549 6.549 16 C -0.531 4.531 17 H 0.093 0.907 18 C 0.080 3.920 19 N -0.876 5.876 20 Si 0.858 3.142 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.256 1.256 24 C 0.124 3.876 25 C 0.110 3.890 26 C -0.087 4.087 27 N -0.355 5.355 28 O 0.117 5.883 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.179 0.821 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.350 0.650 40 H 0.271 0.729 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.736 -8.766 0.031 27.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 C -0.249 4.249 4 C -0.014 4.014 5 N -0.057 5.057 6 C -0.088 4.088 7 C -0.140 4.140 8 C -0.171 4.171 9 C -0.210 4.210 10 C 0.405 3.595 11 O -0.446 6.446 12 N -0.361 5.361 13 C -0.062 4.062 14 C 0.153 3.847 15 O -0.360 6.360 16 C -0.569 4.569 17 H 0.111 0.889 18 C -0.126 4.126 19 N -0.512 5.512 20 Si 0.687 3.313 21 H -0.193 1.193 22 H -0.211 1.211 23 H -0.182 1.182 24 C 0.002 3.998 25 C -0.001 4.001 26 C -0.144 4.144 27 N -0.058 5.058 28 O 0.048 5.952 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.197 0.803 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.177 0.823 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.203 0.797 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -25.069 -10.725 -0.873 27.280 hybrid contribution -0.574 0.952 1.544 1.902 sum -25.643 -9.774 0.671 27.450 Atomic orbital electron populations 1.20409 0.83163 1.05090 1.04583 1.24408 0.96630 0.85560 1.01436 1.22317 0.89635 1.01778 1.11120 1.20305 0.87311 0.88500 1.05246 1.40086 1.09003 1.25723 1.30871 1.20267 0.97562 0.92498 0.98499 1.20364 0.97815 1.00182 0.95612 1.22246 0.93497 1.01932 0.99440 1.20167 0.95240 1.01694 1.03925 1.16622 0.81820 0.79886 0.81149 1.90688 1.78217 1.42926 1.32747 1.49352 1.16549 1.30520 1.39706 1.24564 1.01273 0.89200 0.91164 1.20321 0.89357 0.88036 0.87016 1.86487 1.88931 1.39847 1.20721 1.21154 1.36490 1.03349 0.95882 0.88926 1.25000 0.93969 0.94706 0.98879 1.69856 1.38570 1.16717 1.26033 0.87332 0.80454 0.79460 0.84046 1.19316 1.21050 1.18170 1.23132 0.80563 0.98456 0.97672 1.20521 0.85714 0.98813 0.95056 1.20527 1.02305 0.95036 0.96511 1.74194 0.97151 1.14274 1.20185 1.84910 1.10458 1.32560 1.67271 0.88912 0.89374 0.88643 0.80315 0.90850 0.91945 0.89463 0.82332 0.88839 0.91522 0.79713 0.91909 0.90997 0.88822 0.90242 0.92529 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.17 10.45 36.01 0.38 0.21 16 2 C -0.02 -0.12 7.48 -35.36 -0.26 -0.38 16 3 C -0.23 -1.92 10.17 -39.21 -0.40 -2.32 16 4 C 0.23 2.94 6.49 -154.52 -1.00 1.94 16 5 N -0.38 -5.58 2.93 -54.17 -0.16 -5.74 16 6 C 0.02 0.22 6.80 -81.76 -0.56 -0.34 16 7 C -0.08 -0.79 9.42 36.00 0.34 -0.45 16 8 C -0.15 -2.41 9.99 -37.51 -0.37 -2.78 16 9 C -0.20 -3.78 6.28 -103.35 -0.65 -4.43 16 10 C 0.61 13.21 8.06 -12.59 -0.10 13.11 16 11 O -0.56 -13.12 15.59 5.25 0.08 -13.04 16 12 N -0.63 -13.46 3.69 -186.38 -0.69 -14.15 16 13 C 0.06 1.26 6.07 -8.37 -0.05 1.21 16 14 C 0.19 4.51 1.10 -91.11 -0.10 4.41 16 15 O -0.55 -13.36 13.33 -35.23 -0.47 -13.83 16 16 C -0.53 -13.72 9.28 -34.43 -0.32 -14.04 16 17 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 18 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 19 N -0.88 -24.42 13.96 55.43 0.77 -23.65 16 20 Si 0.86 19.01 24.42 -169.99 -4.15 14.86 16 21 H -0.27 -5.82 7.06 56.52 0.40 -5.42 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.26 -5.35 5.50 56.52 0.31 -5.04 16 24 C 0.12 2.68 8.02 -8.50 -0.07 2.61 16 25 C 0.11 1.88 6.88 -81.51 -0.56 1.32 16 26 C -0.09 -1.33 9.30 36.01 0.33 -1.00 16 27 N -0.35 -4.58 11.73 31.24 0.37 -4.22 16 28 O 0.12 1.16 11.19 17.10 0.19 1.35 16 29 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.56 7.71 -51.93 -0.40 0.16 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.16 2.48 5.46 -52.49 -0.29 2.19 16 37 H 0.09 1.81 8.10 -51.93 -0.42 1.39 16 38 H 0.07 1.32 5.12 -51.93 -0.27 1.05 16 39 H 0.35 8.11 3.16 45.56 0.14 8.25 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.09 1.87 8.10 -51.93 -0.42 1.45 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 45 H 0.10 1.73 6.47 -51.93 -0.34 1.40 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -33.49 370.96 -7.37 -40.86 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.42 Total: 10.90 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -3.49 Total: 1.06 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.29 Total: -47.76 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.20 Total: -25.52 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.15 Total: 14.86 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.49 -7.37 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186831424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.483 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds