Wall clock time and date at job start Wed Apr 1 2020 02:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35280 * 126.70378 * 2 1 4 4 C 1.41960 * 103.95529 * 179.97438 * 3 2 1 5 5 N 1.39880 * 126.88589 * 179.97438 * 4 3 2 6 6 C 1.36740 * 124.94561 * 46.94852 * 5 4 3 7 7 C 1.50697 * 125.56542 * 0.24056 * 6 5 4 8 8 C 1.34413 * 108.87173 * 179.97438 * 6 5 4 9 9 C 1.46726 * 106.51912 * 359.97438 * 8 6 5 10 10 C 1.47257 * 126.89312 * 179.97438 * 9 8 6 11 11 O 1.21635 * 119.99960 * 180.02562 * 10 9 8 12 12 N 1.34780 * 120.00049 * 0.03074 * 10 9 8 13 13 C 1.47067 * 136.05292 * 359.62690 * 12 10 9 14 14 C 1.53756 * 87.88316 * 152.96569 * 13 12 10 15 15 O 1.42901 * 114.39283 * 272.67340 * 14 13 12 16 16 C 1.50710 * 114.26516 * 139.79140 * 14 13 12 17 17 H 1.07997 * 119.99819 * 266.47144 * 16 14 13 18 18 C 1.37882 * 119.99855 * 86.47634 * 16 14 13 19 19 N 1.31511 * 119.99603 * 179.97438 * 18 16 14 20 20 Si 1.86798 * 119.99964 * 359.97438 * 18 16 14 21 21 H 1.48496 * 109.47509 * 90.00283 * 20 18 16 22 22 H 1.48507 * 109.46884 * 210.00545 * 20 18 16 23 23 H 1.48504 * 109.47303 * 329.99847 * 20 18 16 24 24 C 1.47060 * 136.05761 * 180.02562 * 12 10 9 25 25 C 1.35507 * 124.95457 * 226.92452 * 5 4 3 26 26 C 1.50705 * 125.85377 * 359.97438 * 25 5 4 27 27 N 1.30662 * 106.23234 * 0.23699 * 4 3 2 28 28 O 1.20920 * 111.48476 * 359.57828 * 27 4 3 29 29 H 1.08999 * 109.46825 * 89.99686 * 1 2 3 30 30 H 1.08991 * 109.47530 * 210.00344 * 1 2 3 31 31 H 1.09005 * 109.46852 * 330.00493 * 1 2 3 32 32 H 1.07996 * 128.02414 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47281 * 274.92112 * 7 6 5 34 34 H 1.09004 * 109.46816 * 34.92365 * 7 6 5 35 35 H 1.09004 * 109.47259 * 154.92095 * 7 6 5 36 36 H 1.08002 * 126.74316 * 180.02562 * 8 6 5 37 37 H 1.09003 * 113.46225 * 267.69600 * 13 12 10 38 38 H 1.08995 * 113.46850 * 38.13683 * 13 12 10 39 39 H 0.96702 * 113.99634 * 273.58701 * 15 14 13 40 40 H 0.97006 * 119.99257 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.46772 * 321.86034 * 24 12 10 42 42 H 1.09002 * 113.47072 * 92.24705 * 24 12 10 43 43 H 1.08996 * 109.47444 * 270.00532 * 26 25 5 44 44 H 1.09002 * 109.46777 * 30.00349 * 26 25 5 45 45 H 1.08998 * 109.46908 * 150.00103 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0846 0.0000 4 6 3.6247 0.5357 0.0006 5 7 4.8316 1.2428 0.0004 6 6 5.1205 2.2995 0.8188 7 6 4.1982 2.8795 1.8598 8 6 6.3636 2.7326 0.5471 9 6 6.8803 1.8728 -0.5237 10 6 8.2045 1.9557 -1.1625 11 8 8.5040 1.1739 -2.0449 12 7 9.0846 2.8977 -0.7694 13 6 9.0986 3.9876 0.2179 14 6 10.6271 3.8333 0.2819 15 8 11.0832 2.8616 1.2252 16 6 11.3785 5.1374 0.3596 17 1 11.7397 5.6070 -0.5434 18 6 11.6048 5.7308 1.5834 19 7 12.2610 6.8686 1.6511 20 14 10.9795 4.9187 3.1451 21 1 12.0193 4.0014 3.6765 22 1 10.6751 5.9616 4.1575 23 1 9.7468 4.1478 2.8427 24 6 10.4508 3.2926 -1.1440 25 6 5.8851 0.9802 -0.8105 26 6 5.9494 -0.1100 -1.8491 27 7 3.4765 -0.7625 -0.0043 28 8 2.3083 -1.0749 0.0006 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 2.0311 2.1264 -0.0004 33 1 3.5323 3.6046 1.3919 34 1 3.6077 2.0803 2.3079 35 1 4.7873 3.3732 2.6327 36 1 6.8809 3.5521 1.0240 37 1 8.7757 4.9459 -0.1889 38 1 8.5958 3.7343 1.1512 39 1 11.1931 3.2056 2.1222 40 1 12.4199 7.2862 2.5121 41 1 11.1002 2.4471 -1.3711 42 1 10.4842 4.0672 -1.9101 43 1 6.3444 -1.0197 -1.3969 44 1 4.9489 -0.3018 -2.2368 45 1 6.6013 0.2031 -2.6646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186831424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:57 Heat of formation + Delta-G solvation = 67.926274 kcal Electronic energy + Delta-G solvation = -30344.057522 eV Core-core repulsion = 26139.634630 eV Total energy + Delta-G solvation = -4204.422892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.30933 -42.77648 -41.29888 -39.13713 -36.36721 -35.83974 -34.66469 -34.54597 -33.80433 -32.14028 -30.76209 -30.07498 -28.78978 -27.67122 -27.05542 -25.76255 -24.93293 -23.93038 -22.38650 -21.70341 -20.54020 -19.60852 -19.19387 -18.97866 -18.46317 -18.19580 -17.95625 -17.20061 -16.77786 -16.63022 -16.13732 -15.70249 -15.32011 -15.18194 -14.93600 -14.80520 -14.54685 -14.45758 -14.28676 -14.23905 -14.02741 -13.97818 -13.88680 -13.69581 -13.49344 -13.30728 -13.20269 -12.88970 -12.66530 -12.59899 -12.39180 -12.35576 -11.91297 -11.77294 -11.46585 -11.07810 -10.87403 -10.52697 -10.45342 -9.94354 -9.63237 -9.21501 -8.42300 -6.53777 0.00909 0.43989 0.84940 1.07855 1.25920 1.28233 1.28893 1.40137 1.95504 2.05416 2.17370 2.36341 2.75926 3.08383 3.20842 3.26373 3.58266 3.66581 3.77949 3.82242 3.92459 3.99665 4.18742 4.30024 4.31071 4.38973 4.43146 4.51470 4.58832 4.65179 4.65286 4.69864 4.70320 4.75699 4.77510 4.83763 4.88028 4.91696 4.99345 5.10523 5.23047 5.28334 5.52621 5.74876 6.03269 6.04037 6.53541 6.66432 6.78436 7.00086 7.11902 7.16560 8.72919 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018733 B = 0.002817 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.349379 B = 9935.845932 C =10895.624147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.004 3.996 3 C -0.226 4.226 4 C 0.201 3.799 5 N -0.373 5.373 6 C 0.035 3.965 7 C -0.081 4.081 8 C -0.173 4.173 9 C -0.234 4.234 10 C 0.607 3.393 11 O -0.593 6.593 12 N -0.632 5.632 13 C 0.077 3.923 14 C 0.184 3.816 15 O -0.559 6.559 16 C -0.537 4.537 17 H 0.061 0.939 18 C 0.031 3.969 19 N -0.920 5.920 20 Si 0.916 3.084 21 H -0.260 1.260 22 H -0.277 1.277 23 H -0.235 1.235 24 C 0.121 3.879 25 C 0.101 3.899 26 C -0.077 4.077 27 N -0.388 5.388 28 O 0.117 5.883 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.205 0.795 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.163 0.837 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.355 0.645 40 H 0.274 0.726 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.088 -9.153 1.805 31.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.060 4.060 3 C -0.249 4.249 4 C -0.044 4.044 5 N -0.053 5.053 6 C -0.070 4.070 7 C -0.138 4.138 8 C -0.196 4.196 9 C -0.243 4.243 10 C 0.401 3.599 11 O -0.477 6.477 12 N -0.364 5.364 13 C -0.046 4.046 14 C 0.143 3.857 15 O -0.371 6.371 16 C -0.575 4.575 17 H 0.080 0.920 18 C -0.171 4.171 19 N -0.557 5.557 20 Si 0.741 3.259 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.159 1.159 24 C -0.001 4.001 25 C -0.013 4.013 26 C -0.134 4.134 27 N -0.092 5.092 28 O 0.047 5.953 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.137 0.863 32 H 0.222 0.778 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.181 0.819 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.208 0.792 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.124 0.876 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -29.438 -11.115 0.902 31.479 hybrid contribution 0.667 1.014 0.906 1.515 sum -28.771 -10.100 1.809 30.546 Atomic orbital electron populations 1.20723 0.79478 1.06870 1.06092 1.25263 0.98194 0.83998 0.98537 1.22620 0.87637 1.03387 1.11295 1.20683 0.87559 0.88967 1.07192 1.40187 1.09299 1.25729 1.30053 1.20928 0.97280 0.91046 0.97757 1.20556 0.97607 1.00938 0.94684 1.22276 0.94745 1.02728 0.99865 1.20071 0.94454 1.03979 1.05821 1.17120 0.82744 0.79170 0.80894 1.90655 1.79056 1.43867 1.34120 1.49353 1.16275 1.30854 1.39931 1.24388 0.98796 0.89601 0.91774 1.20339 0.90855 0.86804 0.87678 1.86484 1.89284 1.40144 1.21188 1.21210 1.36905 1.04317 0.95099 0.92049 1.25763 0.93985 0.95069 1.02256 1.69982 1.40161 1.18404 1.27172 0.86368 0.80887 0.78942 0.79738 1.18610 1.20269 1.15882 1.23150 0.81160 0.98494 0.97327 1.20629 0.86338 0.98684 0.95609 1.20398 1.02722 0.94507 0.95812 1.74192 0.98748 1.14897 1.21320 1.84870 1.09996 1.33660 1.66762 0.87290 0.88083 0.86336 0.77827 0.88053 0.90913 0.88354 0.81931 0.87584 0.90135 0.79214 0.91604 0.91830 0.87626 0.90666 0.90995 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.03 10.45 71.24 0.74 0.77 16 2 C 0.00 0.04 7.48 25.00 0.19 0.22 16 3 C -0.23 -3.06 10.17 22.51 0.23 -2.83 16 4 C 0.20 4.66 6.49 133.98 0.87 5.53 16 5 N -0.37 -10.57 2.93 -326.35 -0.95 -11.53 16 6 C 0.03 0.90 6.80 40.92 0.28 1.18 16 7 C -0.08 -1.23 9.42 71.23 0.67 -0.56 16 8 C -0.17 -5.44 9.99 23.61 0.24 -5.21 16 9 C -0.23 -8.83 6.28 -19.04 -0.12 -8.95 16 10 C 0.61 26.69 8.06 86.61 0.70 27.39 16 11 O -0.59 -28.61 15.59 -4.14 -0.06 -28.67 16 12 N -0.63 -27.28 3.69 -862.29 -3.18 -30.46 16 13 C 0.08 3.13 6.07 83.27 0.51 3.63 16 14 C 0.18 8.59 1.10 -11.11 -0.01 8.57 16 15 O -0.56 -26.90 13.33 -148.98 -1.99 -28.88 16 16 C -0.54 -28.34 9.28 25.60 0.24 -28.10 16 17 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 18 C 0.03 1.62 5.47 84.66 0.46 2.09 16 19 N -0.92 -52.19 13.96 21.45 0.30 -51.90 16 20 Si 0.92 38.43 24.42 68.60 1.68 40.11 16 21 H -0.26 -10.63 7.06 99.48 0.70 -9.93 16 22 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 23 H -0.23 -8.97 5.50 99.48 0.55 -8.42 16 24 C 0.12 5.35 8.02 83.19 0.67 6.02 16 25 C 0.10 3.43 6.88 41.64 0.29 3.72 16 26 C -0.08 -2.43 9.30 71.24 0.66 -1.77 16 27 N -0.39 -9.51 11.73 -56.20 -0.66 -10.17 16 28 O 0.12 2.07 11.19 71.38 0.80 2.86 16 29 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.12 -0.49 8.14 -2.38 -0.02 -0.51 16 32 H 0.20 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.00 7.71 -2.38 -0.02 0.98 16 35 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.16 4.81 5.46 -2.91 -0.02 4.79 16 37 H 0.11 4.01 8.10 -2.39 -0.02 3.99 16 38 H 0.08 3.04 5.12 -2.39 -0.01 3.03 16 39 H 0.35 15.88 3.16 -74.06 -0.23 15.64 16 40 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 41 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.11 4.34 8.10 -2.39 -0.02 4.32 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.07 1.97 7.66 -2.39 -0.02 1.95 16 45 H 0.09 3.06 6.47 -2.39 -0.02 3.05 16 Total: -1.00 -76.01 370.96 3.18 -72.83 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.65 Total: 34.09 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 6.60 Total: 11.71 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -4.49 Total: -104.05 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -1.25 Total: -54.69 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.68 Total: 40.11 kcal Total: -76.01 3.18 -72.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186831424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.757 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds