Wall clock time and date at job start Wed Apr 1 2020 03:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30350 * 126.00473 * 2 1 4 4 N 1.39901 * 109.04994 * 179.97438 * 3 2 1 5 5 C 1.46499 * 125.70082 * 180.02562 * 4 3 2 6 6 C 1.34129 * 108.60062 * 359.72488 * 4 3 2 7 7 C 1.50698 * 126.32801 * 180.26350 * 6 4 3 8 8 C 1.38618 * 107.33800 * 0.43108 * 6 4 3 9 9 C 1.46923 * 126.48620 * 179.83724 * 8 6 4 10 10 O 1.21420 * 120.00179 * 0.37155 * 9 8 6 11 11 C 1.49303 * 119.99894 * 180.37106 * 9 8 6 12 12 O 1.21366 * 120.00454 * 275.07857 * 11 9 8 13 13 N 1.34780 * 119.99905 * 95.07528 * 11 9 8 14 14 C 1.46499 * 119.99935 * 5.09598 * 13 11 9 15 15 C 1.50706 * 109.46844 * 264.05734 * 14 13 11 16 16 H 1.08000 * 120.00151 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99524 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00523 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99621 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47155 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47297 * 120.00065 * 19 17 15 22 22 H 1.48502 * 109.46956 * 239.99653 * 19 17 15 23 23 C 1.46508 * 119.99975 * 185.37174 * 13 11 9 24 24 C 1.50699 * 109.46900 * 269.72526 * 23 13 11 25 25 C 1.34511 * 125.79379 * 89.71477 * 24 23 13 26 26 C 1.41374 * 106.84466 * 179.88944 * 25 24 23 27 27 C 1.34512 * 106.84179 * 0.37357 * 26 25 24 28 28 O 1.34304 * 125.78693 * 270.02557 * 24 23 13 29 29 H 1.09005 * 109.47326 * 263.84225 * 1 2 3 30 30 H 1.08995 * 109.47424 * 23.84727 * 1 2 3 31 31 H 1.09002 * 109.47069 * 143.85171 * 1 2 3 32 32 H 1.08997 * 109.47481 * 89.97458 * 5 4 3 33 33 H 1.09000 * 109.46900 * 209.97601 * 5 4 3 34 34 H 1.09001 * 109.47310 * 329.97642 * 5 4 3 35 35 H 1.09004 * 109.47540 * 270.19602 * 7 6 4 36 36 H 1.08998 * 109.47238 * 30.19845 * 7 6 4 37 37 H 1.08999 * 109.47201 * 150.19358 * 7 6 4 38 38 H 1.08998 * 109.47313 * 24.05553 * 14 13 11 39 39 H 1.08997 * 109.46979 * 144.06307 * 14 13 11 40 40 H 0.96995 * 120.00035 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.46812 * 29.72164 * 23 13 11 42 42 H 1.08997 * 109.47236 * 149.72508 * 23 13 11 43 43 H 1.08007 * 126.57368 * 0.02562 * 25 24 23 44 44 H 1.08000 * 126.58146 * 180.16404 * 26 25 24 45 45 H 1.08003 * 125.79350 * 179.74883 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0545 0.0000 4 7 3.6114 0.6465 0.0006 5 6 4.7761 1.5352 0.0013 6 6 3.6499 -0.6942 0.0071 7 6 4.8892 -1.5517 0.0155 8 6 2.3392 -1.1452 0.0007 9 6 1.8973 -2.5464 0.0009 10 8 2.7175 -3.4416 0.0141 11 6 0.4398 -2.8695 -0.0149 12 8 -0.1851 -2.9060 1.0249 13 7 -0.1821 -3.1207 -1.1840 14 6 0.5920 -3.1869 -2.4260 15 6 0.5403 -1.8512 -3.1219 16 1 -0.0141 -1.0348 -2.6831 17 6 1.1999 -1.6718 -4.3193 18 7 1.8737 -2.6664 -4.8543 19 14 1.1364 -0.0159 -5.1815 20 1 0.3182 0.9288 -4.3795 21 1 2.5137 0.5204 -5.3256 22 1 0.5264 -0.1807 -6.5254 23 6 -1.6330 -3.3215 -1.2135 24 6 -1.9413 -4.7854 -1.0313 25 6 -2.1388 -5.4073 0.1449 26 6 -2.3995 -6.7655 -0.1485 27 6 -2.3376 -6.8941 -1.4860 28 8 -2.0597 -5.6914 -2.0156 29 1 -0.3634 -0.1102 1.0218 30 1 -0.3634 0.9399 -0.4155 31 1 -0.3633 -0.8298 -0.6062 32 1 5.0642 1.7558 1.0291 33 1 5.6052 1.0479 -0.5118 34 1 4.5255 2.4631 -0.5129 35 1 5.1937 -1.7604 -1.0101 36 1 5.6915 -1.0256 0.5328 37 1 4.6787 -2.4893 0.5300 38 1 1.6277 -3.4368 -2.1958 39 1 0.1696 -3.9523 -3.0770 40 1 2.3381 -2.5400 -5.6965 41 1 -2.0953 -2.7500 -0.4087 42 1 -2.0272 -2.9838 -2.1720 43 1 -2.1067 -4.9552 1.1253 44 1 -2.6052 -7.5500 0.5646 45 1 -2.4857 -7.8092 -2.0402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195164837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:56 Heat of formation + Delta-G solvation = 28.779857 kcal Electronic energy + Delta-G solvation = -31588.635904 eV Core-core repulsion = 27382.515496 eV Total energy + Delta-G solvation = -4206.120408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.16149 -41.27574 -39.59684 -37.59351 -35.32313 -34.16195 -32.84788 -32.48691 -31.76792 -30.50421 -29.37249 -27.93971 -27.32112 -26.14779 -25.51624 -23.73260 -22.72330 -21.32191 -20.81415 -19.96258 -19.17890 -18.38178 -17.25021 -16.94816 -16.39772 -16.24350 -15.81732 -15.67979 -15.23993 -15.20000 -14.58680 -14.36228 -13.79450 -13.61546 -13.46826 -13.41636 -13.09608 -13.07570 -12.89492 -12.50693 -12.49036 -12.43854 -12.38971 -12.31382 -12.06778 -11.75994 -11.64746 -11.62444 -11.19132 -11.11209 -10.86396 -10.77228 -10.32461 -10.13193 -9.80802 -9.55678 -8.93754 -8.86296 -8.57817 -8.29046 -8.17825 -7.95922 -6.18600 -4.25733 1.49185 2.02861 2.28531 2.49554 2.90435 2.94538 3.19926 3.28607 3.31855 3.36058 3.46261 3.78386 4.29756 4.49793 4.67185 4.81234 5.05555 5.06251 5.07046 5.16110 5.21480 5.32682 5.36587 5.38951 5.46304 5.59416 5.65415 5.72644 5.96312 5.97750 6.01021 6.07216 6.13330 6.26247 6.30700 6.32131 6.44273 6.54147 6.82712 6.85955 7.02841 7.15227 7.30853 7.53159 7.73117 7.76354 7.93039 7.97655 8.05266 8.50831 8.80827 9.41304 10.88987 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010021 B = 0.004875 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.548820 B = 5742.116872 C = 7199.094333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.146 3.854 3 N -0.307 5.307 4 N -0.365 5.365 5 C 0.099 3.901 6 C 0.164 3.836 7 C -0.101 4.101 8 C -0.300 4.300 9 C 0.450 3.550 10 O -0.451 6.451 11 C 0.504 3.496 12 O -0.543 6.543 13 N -0.576 5.576 14 C 0.231 3.769 15 C -0.535 4.535 16 H 0.067 0.933 17 C 0.069 3.931 18 N -0.887 5.887 19 Si 0.891 3.109 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.282 1.282 23 C 0.195 3.805 24 C -0.020 4.020 25 C -0.195 4.195 26 C -0.221 4.221 27 C -0.046 4.046 28 O -0.168 6.168 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.264 0.736 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.575 1.874 8.211 8.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.022 4.022 3 N -0.128 5.128 4 N -0.143 5.143 5 C -0.042 4.042 6 C 0.031 3.969 7 C -0.159 4.159 8 C -0.313 4.313 9 C 0.325 3.675 10 O -0.325 6.325 11 C 0.290 3.710 12 O -0.422 6.422 13 N -0.308 5.308 14 C 0.112 3.888 15 C -0.574 4.574 16 H 0.085 0.915 17 C -0.134 4.134 18 N -0.525 5.525 19 Si 0.719 3.281 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.208 1.208 23 C 0.072 3.928 24 C -0.072 4.072 25 C -0.215 4.215 26 C -0.240 4.240 27 C -0.114 4.114 28 O -0.063 6.063 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.016 2.797 8.252 8.772 hybrid contribution 0.167 -0.120 -0.630 0.663 sum 1.182 2.676 7.621 8.164 Atomic orbital electron populations 1.20539 0.86159 1.04546 1.03431 1.22417 0.96884 0.89247 0.93605 1.77053 0.85604 1.22508 1.27648 1.48154 1.06167 1.04086 1.55884 1.21896 0.84386 0.94609 1.03345 1.21693 0.96685 0.84468 0.94006 1.20711 0.91346 0.99351 1.04524 1.20071 0.91830 0.94532 1.24826 1.20960 0.88711 0.87467 0.70325 1.90537 1.54822 1.49300 1.37851 1.20622 0.89085 0.76997 0.84333 1.90693 1.66014 1.53542 1.31956 1.48410 1.06976 1.66426 1.08945 1.19653 0.91431 0.98376 0.79359 1.21431 1.33010 0.96878 1.06039 0.91482 1.24876 0.94853 0.96747 0.96931 1.69945 1.32361 1.31051 1.19104 0.86536 0.77933 0.84056 0.79622 1.19376 1.21121 1.20789 1.19796 0.82190 0.85820 1.05012 1.23093 1.04868 0.93085 0.86108 1.21676 1.07001 0.93874 0.98947 1.21794 1.08863 0.97560 0.95763 1.23967 1.05646 0.87850 0.93984 1.84082 1.68417 1.17038 1.36780 0.89924 0.90547 0.88809 0.90575 0.89304 0.88933 0.88975 0.91115 0.87857 0.94043 0.93815 0.92618 0.87457 0.87772 0.83367 0.83945 0.78585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.25 36.00 0.33 -1.18 16 2 C 0.15 2.82 7.26 -81.96 -0.60 2.23 16 3 N -0.31 -5.68 12.48 33.93 0.42 -5.25 16 4 N -0.36 -5.79 3.97 -63.22 -0.25 -6.04 16 5 C 0.10 0.99 11.05 59.85 0.66 1.65 16 6 C 0.16 2.81 7.02 -81.45 -0.57 2.24 16 7 C -0.10 -1.37 9.35 36.00 0.34 -1.03 16 8 C -0.30 -6.01 6.12 -104.97 -0.64 -6.65 16 9 C 0.45 9.74 5.25 -31.46 -0.17 9.58 16 10 O -0.45 -10.15 15.20 5.44 0.08 -10.07 16 11 C 0.50 10.71 4.66 -11.65 -0.05 10.66 16 12 O -0.54 -11.56 16.53 5.48 0.09 -11.47 16 13 N -0.58 -12.06 1.73 -176.99 -0.31 -12.36 16 14 C 0.23 5.61 5.03 -5.19 -0.03 5.58 16 15 C -0.54 -13.53 9.37 -34.44 -0.32 -13.85 16 16 H 0.07 1.65 6.74 -52.49 -0.35 1.30 16 17 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 18 N -0.89 -24.66 13.29 55.43 0.74 -23.92 16 19 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.19 3.49 5.86 -5.19 -0.03 3.46 16 24 C -0.02 -0.36 6.90 -35.63 -0.25 -0.61 16 25 C -0.19 -3.30 10.81 -39.71 -0.43 -3.73 16 26 C -0.22 -3.26 10.91 -39.71 -0.43 -3.70 16 27 C -0.05 -0.67 12.09 29.42 0.36 -0.32 16 28 O -0.17 -3.03 10.65 5.69 0.06 -2.97 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.74 4.36 -51.93 -0.23 1.52 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.69 7.63 -51.93 -0.40 0.30 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 0.68 7.71 -51.93 -0.40 0.28 16 37 H 0.10 1.51 6.52 -51.93 -0.34 1.18 16 38 H 0.04 1.11 6.46 -51.93 -0.34 0.78 16 39 H 0.04 1.13 8.12 -51.93 -0.42 0.71 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.11 1.71 7.49 -51.93 -0.39 1.33 16 42 H 0.10 1.79 8.07 -51.93 -0.42 1.37 16 43 H 0.15 2.46 8.06 -52.48 -0.42 2.04 16 44 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 45 H 0.20 2.03 8.06 -52.48 -0.42 1.60 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -33.20 387.40 -6.07 -39.27 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.80 Total: 5.27 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.93 Total: 6.05 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.60 Total: -47.58 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.23 Total: -24.51 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.20 -6.07 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195164837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.046 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds