Wall clock time and date at job start Wed Apr 1 2020 03:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35352 * 117.00250 * 2 1 4 4 C 1.38991 * 126.40751 * 85.18532 * 3 2 1 5 5 C 1.46927 * 126.49705 * 0.02562 * 4 3 2 6 6 O 1.21670 * 119.99828 * 89.99797 * 5 4 3 7 7 N 1.34776 * 119.99946 * 270.00358 * 5 4 3 8 8 C 1.46496 * 119.99878 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47132 * 179.97438 * 8 7 5 10 10 C 1.38302 * 119.93473 * 269.72613 * 9 8 7 11 11 C 1.38094 * 120.07246 * 179.72394 * 10 9 8 12 12 C 1.38883 * 119.92858 * 0.57184 * 11 10 9 13 13 O 1.35751 * 120.06546 * 179.68583 * 12 11 10 14 14 C 1.34833 * 116.99676 * 185.13645 * 13 12 11 15 15 H 1.07999 * 120.00122 * 4.77615 * 14 13 12 16 16 C 1.38650 * 119.99953 * 184.77783 * 14 13 12 17 17 N 1.31560 * 120.00272 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00068 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47353 * 90.00052 * 18 16 14 20 20 H 1.48501 * 109.47065 * 210.00070 * 18 16 14 21 21 H 1.48502 * 109.46688 * 329.99779 * 18 16 14 22 22 C 1.38875 * 119.86089 * 359.70077 * 12 11 10 23 23 C 1.38096 * 119.93206 * 0.02562 * 22 12 11 24 24 C 1.41456 * 107.00716 * 180.26383 * 4 3 2 25 25 C 1.50703 * 125.93221 * 179.73669 * 24 4 3 26 26 N 1.30318 * 108.13777 * 359.55458 * 24 4 3 27 27 N 1.34662 * 126.40392 * 265.18611 * 3 2 1 28 28 C 1.46499 * 125.74145 * 359.96415 * 27 3 2 29 29 H 1.08996 * 109.46989 * 55.13098 * 1 2 3 30 30 H 1.08996 * 109.46967 * 175.13142 * 1 2 3 31 31 H 1.09003 * 109.46734 * 295.13261 * 1 2 3 32 32 H 0.96999 * 119.99755 * 359.97438 * 7 5 4 33 33 H 1.08994 * 109.47499 * 59.99471 * 8 7 5 34 34 H 1.09003 * 109.47086 * 299.99186 * 8 7 5 35 35 H 1.08004 * 119.95995 * 359.97438 * 10 9 8 36 36 H 1.08001 * 120.03666 * 180.26863 * 11 10 9 37 37 H 0.96994 * 120.00007 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.03291 * 179.97438 * 22 12 11 39 39 H 1.08002 * 119.96374 * 180.02562 * 23 22 12 40 40 H 1.09003 * 109.47397 * 89.99863 * 25 24 4 41 41 H 1.09001 * 109.47195 * 210.00158 * 25 24 4 42 42 H 1.08996 * 109.47262 * 330.00061 * 25 24 4 43 43 H 1.09005 * 109.47209 * 94.66105 * 28 27 3 44 44 H 1.08995 * 109.47206 * 214.66041 * 28 27 3 45 45 H 1.08995 * 109.47058 * 334.66402 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2060 0.0000 4 6 2.3345 1.9836 1.1147 5 6 2.0338 1.6521 2.5141 6 8 2.8450 1.0384 3.1817 7 7 0.8594 2.0276 3.0583 8 6 0.5598 1.6976 4.4538 9 6 -0.8045 2.2269 4.8135 10 6 -0.9349 3.5015 5.3342 11 6 -2.1844 3.9916 5.6595 12 6 -3.3094 3.1987 5.4744 13 8 -4.5383 3.6753 5.7992 14 6 -5.5742 2.8185 5.6952 15 1 -5.3961 1.7842 5.4405 16 6 -6.8682 3.2653 5.9152 17 7 -7.0852 4.5251 6.2259 18 14 -8.3035 2.0785 5.7705 19 1 -8.5612 1.4500 7.0910 20 1 -9.5139 2.8170 5.3291 21 1 -7.9763 1.0251 4.7762 22 6 -3.1746 1.9171 4.9566 23 6 -1.9230 1.4349 4.6280 24 6 2.9698 3.1573 0.6459 25 6 3.4615 4.2979 1.4995 26 7 3.0597 3.0793 -0.6518 27 7 2.4874 1.8767 -1.0800 28 6 2.3884 1.4231 -2.4695 29 1 -0.3633 0.5875 -0.8431 30 1 -0.3633 -1.0239 -0.0872 31 1 -0.3633 0.4365 0.9304 32 1 0.2128 2.5172 2.5261 33 1 1.3082 2.1516 5.1033 34 1 0.5755 0.6153 4.5826 35 1 -0.0591 4.1157 5.4827 36 1 -2.2860 4.9886 6.0620 37 1 -7.9905 4.8378 6.3795 38 1 -4.0476 1.2979 4.8119 39 1 -1.8175 0.4384 4.2249 40 1 4.4948 4.1128 1.7932 41 1 3.4059 5.2267 0.9318 42 1 2.8395 4.3791 2.3908 43 1 1.4922 1.8433 -2.9259 44 1 3.2673 1.7535 -3.0231 45 1 2.3320 0.3348 -2.4932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264812046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:03 Heat of formation + Delta-G solvation = 6.011146 kcal Electronic energy + Delta-G solvation = -29262.134344 eV Core-core repulsion = 25055.026611 eV Total energy + Delta-G solvation = -4207.107733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.82864 -39.45740 -38.85491 -38.52952 -36.85227 -34.35752 -34.23674 -32.39693 -30.75974 -30.30220 -30.00401 -29.41258 -27.64050 -26.29969 -25.72991 -24.67463 -22.37687 -22.07347 -20.82166 -20.64398 -20.07844 -18.32514 -18.09395 -17.23754 -16.88368 -16.79956 -16.29239 -15.83036 -15.10218 -15.06645 -14.83473 -14.59383 -14.40823 -14.12395 -13.84649 -13.78735 -13.67348 -13.57366 -13.38167 -13.02090 -12.81142 -12.78580 -12.65039 -12.47241 -12.13328 -12.04010 -11.70307 -11.54625 -11.43085 -11.01744 -10.83191 -10.69300 -10.54509 -10.51503 -9.96824 -9.49883 -9.47877 -8.94989 -8.93489 -8.81730 -8.31077 -7.35170 -6.55785 -4.14607 1.09111 1.81410 2.04118 2.10459 2.17041 2.60559 3.05552 3.06797 3.11641 3.15470 3.49937 3.87660 4.12443 4.48549 4.57154 4.71731 4.73751 4.83750 4.88766 4.98031 5.00858 5.01019 5.13231 5.18963 5.23254 5.29650 5.40511 5.41615 5.55004 5.63680 5.65250 5.78908 5.80475 5.93826 6.10128 6.22430 6.32767 6.51653 6.57991 6.77905 6.93447 6.99246 7.11391 7.24605 7.28723 7.32313 7.61752 7.69727 7.88816 8.29679 8.89581 9.57855 10.61759 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.002282 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.584494 B =12267.014431 C =12998.829412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.307 6.307 3 C 0.293 3.707 4 C -0.287 4.287 5 C 0.598 3.402 6 O -0.536 6.536 7 N -0.715 5.715 8 C 0.178 3.822 9 C -0.214 4.214 10 C -0.053 4.053 11 C -0.195 4.195 12 C 0.160 3.840 13 O -0.173 6.173 14 C -0.393 4.393 15 H 0.093 0.907 16 C 0.040 3.960 17 N -0.859 5.859 18 Si 0.942 3.058 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.237 4.237 23 C -0.051 4.051 24 C 0.123 3.877 25 C -0.078 4.078 26 N -0.279 5.279 27 N -0.367 5.367 28 C 0.096 3.904 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.272 0.728 38 H 0.128 0.872 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.085 -5.188 -14.711 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.217 6.217 3 C 0.121 3.879 4 C -0.302 4.302 5 C 0.382 3.618 6 O -0.413 6.413 7 N -0.366 5.366 8 C 0.056 3.944 9 C -0.215 4.215 10 C -0.072 4.072 11 C -0.214 4.214 12 C 0.105 3.895 13 O -0.076 6.076 14 C -0.469 4.469 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.493 5.493 18 Si 0.766 3.234 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.256 4.256 23 C -0.070 4.070 24 C -0.043 4.043 25 C -0.137 4.137 26 N -0.104 5.104 27 N -0.155 5.155 28 C -0.045 4.045 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.235 0.765 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.783 -5.000 -15.245 22.506 hybrid contribution -1.634 -0.846 0.132 1.845 sum 14.149 -5.846 -15.113 21.512 Atomic orbital electron populations 1.23272 0.76491 1.04509 1.02080 1.86000 1.21558 1.21005 1.93096 1.19124 0.96587 0.85790 0.86359 1.19907 1.17899 0.98846 0.93593 1.17065 0.81579 0.78416 0.84756 1.90793 1.47697 1.40123 1.62651 1.46381 1.18228 1.58015 1.13966 1.20012 0.93735 0.99686 0.80934 1.19209 0.93583 0.96647 1.12105 1.20538 0.95949 0.94279 0.96449 1.20214 0.90522 1.00840 1.09859 1.19453 0.86928 0.91895 0.91205 1.83992 1.11612 1.38914 1.73034 1.21343 0.83770 0.91854 1.49961 0.88958 1.25316 0.97851 0.96963 0.96327 1.70033 1.22211 1.14333 1.42744 0.85702 0.79559 0.79118 0.79010 1.19763 1.20187 1.19162 1.21153 0.97831 0.97610 1.09043 1.20630 0.91779 0.97896 0.96726 1.22188 0.96088 0.94954 0.91089 1.20302 1.02079 0.93581 0.97690 1.77157 1.21724 0.98901 1.12596 1.48726 1.45915 1.14317 1.06586 1.21960 1.04244 1.00979 0.77357 0.92873 0.87411 0.91925 0.76489 0.91335 0.91505 0.86866 0.86371 0.91856 0.85465 0.87481 0.89717 0.90066 0.89968 0.90300 0.88798 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.13 101.05 1.12 1.37 16 2 O -0.31 -3.44 10.36 -17.75 -0.18 -3.62 16 3 C 0.29 3.57 7.02 -16.03 -0.11 3.46 16 4 C -0.29 -3.80 5.89 -104.88 -0.62 -4.42 16 5 C 0.60 8.68 7.34 -12.74 -0.09 8.58 16 6 O -0.54 -9.71 17.11 5.22 0.09 -9.62 16 7 N -0.71 -9.13 5.54 -62.73 -0.35 -9.48 16 8 C 0.18 2.44 5.80 -5.20 -0.03 2.41 16 9 C -0.21 -3.30 5.25 -104.57 -0.55 -3.85 16 10 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 11 C -0.20 -3.82 9.99 -39.40 -0.39 -4.22 16 12 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 13 O -0.17 -4.72 9.76 0.04 0.00 -4.72 16 14 C -0.39 -10.52 9.45 30.88 0.29 -10.23 16 15 H 0.09 2.27 5.27 -52.49 -0.28 2.00 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -24.38 13.67 55.48 0.76 -23.63 16 18 Si 0.94 19.72 29.55 -169.99 -5.02 14.69 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.24 -4.76 9.14 -39.40 -0.36 -5.12 16 23 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 24 C 0.12 1.49 7.26 -82.01 -0.60 0.89 16 25 C -0.08 -0.72 10.28 36.01 0.37 -0.35 16 26 N -0.28 -3.40 12.48 33.91 0.42 -2.97 16 27 N -0.37 -3.97 3.99 -67.67 -0.27 -4.24 16 28 C 0.10 0.59 11.41 59.85 0.68 1.27 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.40 4.69 8.45 -40.82 -0.34 4.34 16 33 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.13 2.58 5.70 -52.49 -0.30 2.28 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.73 8.01 -51.93 -0.42 0.32 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.45 8.02 -51.93 -0.42 0.04 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -33.91 396.35 -5.94 -39.85 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.95 Total: 6.10 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.41 Total: -8.33 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.56 Total: -40.32 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.09 Total: -17.96 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.91 -5.94 -39.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264812046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.861 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds