Wall clock time and date at job start Wed Apr 1 2020 03:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35352 * 117.00250 * 2 1 4 4 C 1.38991 * 126.40751 * 85.18532 * 3 2 1 5 5 C 1.46927 * 126.49705 * 0.02562 * 4 3 2 6 6 O 1.21670 * 119.99828 * 89.99797 * 5 4 3 7 7 N 1.34776 * 119.99946 * 270.00358 * 5 4 3 8 8 C 1.46496 * 119.99878 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47132 * 179.97438 * 8 7 5 10 10 C 1.38302 * 119.93473 * 269.72613 * 9 8 7 11 11 C 1.38094 * 120.07246 * 179.72394 * 10 9 8 12 12 C 1.38883 * 119.92858 * 0.57184 * 11 10 9 13 13 O 1.35751 * 120.06546 * 179.68583 * 12 11 10 14 14 C 1.34833 * 116.99676 * 185.13645 * 13 12 11 15 15 H 1.07999 * 120.00122 * 4.77615 * 14 13 12 16 16 C 1.38650 * 119.99953 * 184.77783 * 14 13 12 17 17 N 1.31560 * 120.00272 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00068 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47353 * 90.00052 * 18 16 14 20 20 H 1.48501 * 109.47065 * 210.00070 * 18 16 14 21 21 H 1.48502 * 109.46688 * 329.99779 * 18 16 14 22 22 C 1.38875 * 119.86089 * 359.70077 * 12 11 10 23 23 C 1.38096 * 119.93206 * 0.02562 * 22 12 11 24 24 C 1.41456 * 107.00716 * 180.26383 * 4 3 2 25 25 C 1.50703 * 125.93221 * 179.73669 * 24 4 3 26 26 N 1.30318 * 108.13777 * 359.55458 * 24 4 3 27 27 N 1.34662 * 126.40392 * 265.18611 * 3 2 1 28 28 C 1.46499 * 125.74145 * 359.96415 * 27 3 2 29 29 H 1.08996 * 109.46989 * 55.13098 * 1 2 3 30 30 H 1.08996 * 109.46967 * 175.13142 * 1 2 3 31 31 H 1.09003 * 109.46734 * 295.13261 * 1 2 3 32 32 H 0.96999 * 119.99755 * 359.97438 * 7 5 4 33 33 H 1.08994 * 109.47499 * 59.99471 * 8 7 5 34 34 H 1.09003 * 109.47086 * 299.99186 * 8 7 5 35 35 H 1.08004 * 119.95995 * 359.97438 * 10 9 8 36 36 H 1.08001 * 120.03666 * 180.26863 * 11 10 9 37 37 H 0.96994 * 120.00007 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.03291 * 179.97438 * 22 12 11 39 39 H 1.08002 * 119.96374 * 180.02562 * 23 22 12 40 40 H 1.09003 * 109.47397 * 89.99863 * 25 24 4 41 41 H 1.09001 * 109.47195 * 210.00158 * 25 24 4 42 42 H 1.08996 * 109.47262 * 330.00061 * 25 24 4 43 43 H 1.09005 * 109.47209 * 94.66105 * 28 27 3 44 44 H 1.08995 * 109.47206 * 214.66041 * 28 27 3 45 45 H 1.08995 * 109.47058 * 334.66402 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2060 0.0000 4 6 2.3345 1.9836 1.1147 5 6 2.0338 1.6521 2.5141 6 8 2.8450 1.0384 3.1817 7 7 0.8594 2.0276 3.0583 8 6 0.5598 1.6976 4.4538 9 6 -0.8045 2.2269 4.8135 10 6 -0.9349 3.5015 5.3342 11 6 -2.1844 3.9916 5.6595 12 6 -3.3094 3.1987 5.4744 13 8 -4.5383 3.6753 5.7992 14 6 -5.5742 2.8185 5.6952 15 1 -5.3961 1.7842 5.4405 16 6 -6.8682 3.2653 5.9152 17 7 -7.0852 4.5251 6.2259 18 14 -8.3035 2.0785 5.7705 19 1 -8.5612 1.4500 7.0910 20 1 -9.5139 2.8170 5.3291 21 1 -7.9763 1.0251 4.7762 22 6 -3.1746 1.9171 4.9566 23 6 -1.9230 1.4349 4.6280 24 6 2.9698 3.1573 0.6459 25 6 3.4615 4.2979 1.4995 26 7 3.0597 3.0793 -0.6518 27 7 2.4874 1.8767 -1.0800 28 6 2.3884 1.4231 -2.4695 29 1 -0.3633 0.5875 -0.8431 30 1 -0.3633 -1.0239 -0.0872 31 1 -0.3633 0.4365 0.9304 32 1 0.2128 2.5172 2.5261 33 1 1.3082 2.1516 5.1033 34 1 0.5755 0.6153 4.5826 35 1 -0.0591 4.1157 5.4827 36 1 -2.2860 4.9886 6.0620 37 1 -7.9905 4.8378 6.3795 38 1 -4.0476 1.2979 4.8119 39 1 -1.8175 0.4384 4.2249 40 1 4.4948 4.1128 1.7932 41 1 3.4059 5.2267 0.9318 42 1 2.8395 4.3791 2.3908 43 1 1.4922 1.8433 -2.9259 44 1 3.2673 1.7535 -3.0231 45 1 2.3320 0.3348 -2.4932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264812046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:02 Heat of formation + Delta-G solvation = -18.301324 kcal Electronic energy + Delta-G solvation = -29263.188612 eV Core-core repulsion = 25055.026611 eV Total energy + Delta-G solvation = -4208.162001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.68289 -40.91543 -40.19974 -39.32140 -38.44855 -35.62688 -35.00923 -34.26294 -31.91509 -31.76153 -30.96057 -30.32371 -28.41766 -27.64030 -26.91405 -25.98006 -23.62549 -23.35851 -22.12130 -21.67818 -21.05521 -19.86740 -19.24276 -18.80250 -17.95856 -17.65359 -17.12171 -16.94263 -16.51437 -16.33628 -15.92820 -15.77143 -15.65045 -15.52099 -15.32830 -15.03555 -14.56929 -14.45250 -14.35963 -14.33484 -14.12636 -13.70845 -13.64150 -13.34754 -13.23335 -13.10561 -13.02594 -12.74170 -12.57402 -12.38101 -12.32929 -12.21793 -12.11379 -11.35568 -11.21412 -11.15340 -10.78865 -10.29871 -10.09341 -9.78856 -9.71592 -8.99544 -8.47812 -6.15732 0.25557 0.56382 0.59978 1.07304 1.26603 1.36285 1.44651 1.50030 1.53131 2.17426 2.30204 2.46384 2.86999 3.18935 3.38047 3.49535 3.84405 3.85472 4.04508 4.09678 4.16252 4.19719 4.25919 4.27005 4.32632 4.40158 4.48829 4.58788 4.59467 4.63746 4.73028 4.78513 4.80260 4.82938 4.95761 5.06166 5.11043 5.14790 5.28683 5.39178 5.44410 5.54302 5.70789 5.76964 6.02174 6.17837 6.20473 6.44333 6.53446 6.97252 7.19451 7.76988 8.75116 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.002282 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.584494 B =12267.014431 C =12998.829412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.294 3.706 4 C -0.316 4.316 5 C 0.607 3.393 6 O -0.575 6.575 7 N -0.703 5.703 8 C 0.183 3.817 9 C -0.182 4.182 10 C -0.042 4.042 11 C -0.205 4.205 12 C 0.122 3.878 13 O -0.229 6.229 14 C -0.412 4.412 15 H 0.104 0.896 16 C -0.022 4.022 17 N -0.919 5.919 18 Si 1.017 2.983 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.251 1.251 22 C -0.243 4.243 23 C -0.045 4.045 24 C 0.117 3.883 25 C -0.078 4.078 26 N -0.295 5.295 27 N -0.364 5.364 28 C 0.085 3.915 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.053 0.947 32 H 0.408 0.592 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.149 0.851 36 H 0.115 0.885 37 H 0.273 0.727 38 H 0.120 0.880 39 H 0.140 0.860 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.632 -6.951 -16.469 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.120 3.880 4 C -0.332 4.332 5 C 0.393 3.607 6 O -0.455 6.455 7 N -0.353 5.353 8 C 0.061 3.939 9 C -0.183 4.183 10 C -0.061 4.061 11 C -0.224 4.224 12 C 0.071 3.929 13 O -0.135 6.135 14 C -0.488 4.488 15 H 0.121 0.879 16 C -0.219 4.219 17 N -0.557 5.557 18 Si 0.836 3.164 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.174 1.174 22 C -0.262 4.262 23 C -0.063 4.063 24 C -0.048 4.048 25 C -0.136 4.136 26 N -0.120 5.120 27 N -0.152 5.152 28 C -0.054 4.054 29 H 0.087 0.913 30 H 0.148 0.852 31 H 0.072 0.928 32 H 0.244 0.756 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.167 0.833 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.157 0.843 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 17.373 -6.773 -17.046 25.264 hybrid contribution -1.736 -0.388 0.544 1.860 sum 15.638 -7.161 -16.502 23.836 Atomic orbital electron populations 1.23493 0.74791 1.06218 1.02281 1.85984 1.23155 1.20550 1.93164 1.19219 0.96325 0.85794 0.86630 1.19905 1.19995 1.00132 0.93189 1.17150 0.81130 0.77420 0.85030 1.90773 1.48936 1.42039 1.63725 1.46177 1.18034 1.57579 1.13546 1.19965 0.92340 1.00052 0.81554 1.19471 0.94260 0.95735 1.08814 1.20896 0.95618 0.94838 0.94716 1.20447 0.91075 1.00783 1.10078 1.20015 0.86463 0.93630 0.92796 1.83958 1.13094 1.40206 1.76267 1.21813 0.84379 0.92550 1.50062 0.87917 1.26566 1.00671 0.98868 0.95840 1.70177 1.22838 1.16789 1.45915 0.84611 0.75404 0.76878 0.79507 1.18991 1.19750 1.17427 1.21232 0.99195 0.96641 1.09143 1.20934 0.90480 0.99340 0.95588 1.22565 0.95709 0.95270 0.91296 1.20398 1.02278 0.93386 0.97570 1.77120 1.22375 0.99845 1.12707 1.49058 1.44765 1.13643 1.07753 1.22343 1.05717 1.02031 0.75337 0.91334 0.85235 0.92829 0.75583 0.90393 0.90947 0.83332 0.86707 0.91824 0.86208 0.84255 0.89161 0.88625 0.89781 0.88455 0.87666 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.13 113.37 1.26 1.61 16 2 O -0.32 -6.44 10.36 -86.41 -0.90 -7.34 16 3 C 0.29 6.62 7.02 84.44 0.59 7.21 16 4 C -0.32 -7.88 5.89 -20.03 -0.12 -8.00 16 5 C 0.61 16.42 7.34 86.52 0.63 17.06 16 6 O -0.58 -19.93 17.11 -4.25 -0.07 -20.00 16 7 N -0.70 -15.92 5.54 -470.59 -2.61 -18.53 16 8 C 0.18 4.34 5.80 85.63 0.50 4.83 16 9 C -0.18 -5.00 5.25 -19.83 -0.10 -5.11 16 10 C -0.04 -1.26 9.69 22.25 0.22 -1.04 16 11 C -0.20 -7.99 9.99 22.39 0.22 -7.77 16 12 C 0.12 5.67 6.65 22.58 0.15 5.82 16 13 O -0.23 -13.20 9.76 -22.78 -0.22 -13.42 16 14 C -0.41 -23.02 9.45 67.92 0.64 -22.38 16 15 H 0.10 5.22 5.27 -2.91 -0.02 5.21 16 16 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 17 N -0.92 -55.00 13.67 21.61 0.30 -54.71 16 18 Si 1.02 41.29 29.55 68.60 2.03 43.31 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 22 C -0.24 -9.67 9.14 22.39 0.20 -9.46 16 23 C -0.04 -1.37 9.69 22.25 0.22 -1.15 16 24 C 0.12 2.66 7.26 43.58 0.32 2.98 16 25 C -0.08 -1.29 10.28 71.24 0.73 -0.56 16 26 N -0.29 -6.70 12.48 -46.63 -0.58 -7.28 16 27 N -0.36 -7.14 3.99 -479.81 -1.91 -9.06 16 28 C 0.08 0.84 11.41 127.77 1.46 2.29 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.41 8.33 8.45 -92.71 -0.78 7.55 16 33 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 34 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 36 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.12 4.89 5.70 -2.91 -0.02 4.88 16 39 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.33 8.01 -2.39 -0.02 1.32 16 43 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.11 0.76 8.02 -2.39 -0.02 0.74 16 Total: -1.00 -78.10 396.35 3.67 -74.44 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.25 Total: 26.97 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 7.39 Total: -14.39 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -4.81 Total: -89.57 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -1.19 Total: -40.76 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -78.10 3.67 -74.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264812046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.135 kcal (2) G-P(sol) polarization free energy of solvation -78.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds