Wall clock time and date at job start Wed Apr 1 2020 03:49:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53002 * 110.53713 * 2 1
4 4 C 1.53003 * 109.46563 * 300.69527 * 3 2 1
5 5 C 1.52998 * 109.46885 * 179.97438 * 4 3 2
6 6 C 1.50697 * 109.47454 * 180.02562 * 5 4 3
7 7 O 1.21290 * 119.99524 * 359.97438 * 6 5 4
8 8 N 1.34777 * 120.00516 * 180.02562 * 6 5 4
9 9 C 1.39239 * 120.00069 * 185.57816 * 8 6 5
10 10 C 1.39481 * 119.83264 * 34.71082 * 9 8 6
11 11 C 1.36379 * 120.16314 * 180.02562 * 10 9 8
12 12 C 1.40865 * 119.83268 * 0.02562 * 11 10 9
13 13 C 1.41155 * 120.16561 * 179.72612 * 12 11 10
14 14 H 1.08002 * 119.99690 * 325.60292 * 13 12 11
15 15 C 1.39901 * 119.99881 * 145.60704 * 13 12 11
16 16 N 1.30869 * 120.00311 * 354.56694 * 15 13 12
17 17 Si 1.86807 * 119.99744 * 174.57168 * 15 13 12
18 18 H 1.48493 * 109.47323 * 89.99549 * 17 15 13
19 19 H 1.48500 * 109.47075 * 209.99809 * 17 15 13
20 20 H 1.48499 * 109.47027 * 329.99530 * 17 15 13
21 21 C 1.40873 * 119.66966 * 359.97438 * 12 11 10
22 22 C 1.36369 * 119.82835 * 359.97360 * 21 12 11
23 23 N 1.47317 * 110.59474 * 122.82732 * 2 1 3
24 24 C 1.34527 * 106.61912 * 118.68644 * 23 2 1
25 25 O 1.21543 * 123.76901 * 180.02562 * 24 23 2
26 26 N 1.33784 * 112.45839 * 359.97438 * 24 23 2
27 27 C 1.35115 * 111.69065 * 359.91668 * 26 24 23
28 28 O 1.21235 * 127.34195 * 180.09707 * 27 26 24
29 29 H 1.09004 * 109.46778 * 60.00339 * 1 2 3
30 30 H 1.09002 * 109.47133 * 180.02562 * 1 2 3
31 31 H 1.08994 * 109.46977 * 300.00768 * 1 2 3
32 32 H 1.09002 * 109.46853 * 180.70153 * 3 2 1
33 33 H 1.08991 * 109.47316 * 60.69732 * 3 2 1
34 34 H 1.08995 * 109.47204 * 60.00392 * 4 3 2
35 35 H 1.09000 * 109.47352 * 299.99899 * 4 3 2
36 36 H 1.09003 * 109.47442 * 60.00100 * 5 4 3
37 37 H 1.09004 * 109.47285 * 300.00577 * 5 4 3
38 38 H 0.96993 * 119.99558 * 5.56692 * 8 6 5
39 39 H 1.07994 * 119.91793 * 359.97438 * 10 9 8
40 40 H 1.08006 * 120.08140 * 180.02562 * 11 10 9
41 41 H 0.97002 * 120.00128 * 180.02562 * 16 15 13
42 42 H 1.08006 * 120.08546 * 180.02562 * 21 12 11
43 43 H 1.08008 * 119.91501 * 180.02562 * 22 21 12
44 44 H 0.96995 * 126.69156 * 298.71054 * 23 2 1
45 45 H 0.97007 * 124.18134 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0668 1.4328 0.0000
4 6 1.5560 2.1686 -1.2405
5 6 2.0922 3.6015 -1.2402
6 6 1.5887 4.3266 -2.4616
7 8 0.8720 3.7533 -3.2546
8 7 1.9357 5.6116 -2.6734
9 6 1.3792 6.3167 -3.7373
10 6 0.0604 6.0703 -4.1188
11 6 -0.4913 6.7567 -5.1601
12 6 0.2744 7.7161 -5.8513
13 6 -0.2877 8.4264 -6.9338
14 1 -0.9984 7.9417 -7.5869
15 6 0.0757 9.7582 -7.1607
16 7 0.8534 10.3783 -6.3102
17 14 -0.5492 10.6514 -8.6777
18 1 -1.8392 11.3167 -8.3642
19 1 0.4452 11.6718 -9.0961
20 1 -0.7504 9.6756 -9.7789
21 6 1.6057 7.9592 -5.4600
22 6 2.1433 7.2658 -4.4161
23 7 2.0482 -0.7476 1.1588
24 6 2.7628 -1.7751 0.6655
25 8 3.3320 -2.5961 1.3578
26 7 2.7759 -1.7929 -0.6721
27 6 2.0629 -0.7698 -1.1922
28 8 1.8860 -0.5180 -2.3648
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8899
32 1 3.1565 1.4125 -0.0126
33 1 1.7233 1.9495 0.8961
34 1 0.4663 2.1888 -1.2279
35 1 1.8996 1.6519 -2.1366
36 1 3.1820 3.5818 -1.2525
37 1 1.7483 4.1180 -0.3440
38 1 2.5730 6.0451 -2.0846
39 1 -0.5250 5.3337 -3.5888
40 1 -1.5128 6.5652 -5.4542
41 1 1.1051 11.3018 -6.4674
42 1 2.1987 8.6936 -5.9849
43 1 3.1637 7.4514 -4.1146
44 1 1.9023 -0.5397 2.0949
45 1 3.2390 -2.4592 -1.2038
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000269358670.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:49:46
Heat of formation + Delta-G solvation = -98.833580 kcal
Electronic energy + Delta-G solvation = -28841.673356 eV
Core-core repulsion = 24630.019214 eV
Total energy + Delta-G solvation = -4211.654142 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-43.52286 -41.14625 -39.85358 -39.10335 -37.85434 -36.40265 -36.02274 -34.68382
-34.28384 -31.77913 -31.47040 -30.68736 -28.49629 -26.75037 -25.68642 -23.95936
-23.75205 -23.13203 -22.37557 -21.08439 -20.91703 -19.32454 -19.23416 -18.31665
-17.83352 -17.67704 -17.55254 -17.03911 -16.93354 -16.72245 -16.56098 -15.83623
-15.67901 -15.52145 -15.18647 -14.91404 -14.53385 -14.38679 -14.14277 -13.99099
-13.65947 -13.56057 -13.40477 -13.02687 -12.88515 -12.80704 -12.69333 -12.65687
-12.39390 -12.33685 -11.92435 -11.84106 -11.69588 -11.56437 -11.48932 -11.12838
-11.01560 -10.80638 -10.53279 -10.40212 -9.47772 -8.72263 -8.54643 -6.29858
0.52233 0.81588 1.12572 1.39841 1.42607 1.45223 1.53152 1.91065
1.92967 2.09001 2.24740 2.45708 2.81009 2.90034 3.51015 3.66032
3.69572 3.88111 4.11459 4.20747 4.33726 4.38734 4.46331 4.59018
4.65306 4.70873 4.76527 4.81897 4.91798 4.94482 5.04312 5.12523
5.13780 5.16458 5.30328 5.35071 5.44605 5.51440 5.68005 5.81945
5.87324 5.89638 6.04327 6.12957 6.39223 6.39474 6.66652 6.81574
6.96271 7.00736 7.12449 7.50619 8.43095
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.034319 B = 0.001701 C = 0.001678
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 815.667699 B =16456.875963 C =16683.429900
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.128 3.872
3 C -0.103 4.103
4 C -0.113 4.113
5 C -0.123 4.123
6 C 0.491 3.509
7 O -0.578 6.578
8 N -0.650 5.650
9 C 0.025 3.975
10 C -0.094 4.094
11 C -0.222 4.222
12 C 0.071 3.929
13 C -0.504 4.504
14 H 0.070 0.930
15 C 0.032 3.968
16 N -0.840 5.840
17 Si 0.984 3.016
18 H -0.264 1.264
19 H -0.265 1.265
20 H -0.263 1.263
21 C -0.156 4.156
22 C -0.120 4.120
23 N -0.695 5.695
24 C 0.707 3.293
25 O -0.584 6.584
26 N -0.679 5.679
27 C 0.525 3.475
28 O -0.485 6.485
29 H 0.076 0.924
30 H 0.066 0.934
31 H 0.110 0.890
32 H 0.083 0.917
33 H 0.125 0.875
34 H 0.072 0.928
35 H 0.054 0.946
36 H 0.117 0.883
37 H 0.131 0.869
38 H 0.418 0.582
39 H 0.105 0.895
40 H 0.095 0.905
41 H 0.286 0.714
42 H 0.107 0.893
43 H 0.125 0.875
44 H 0.454 0.546
45 H 0.436 0.564
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.499 -15.385 18.916 24.794
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.037 3.963
3 C -0.141 4.141
4 C -0.152 4.152
5 C -0.162 4.162
6 C 0.281 3.719
7 O -0.457 6.457
8 N -0.296 5.296
9 C -0.068 4.068
10 C -0.114 4.114
11 C -0.242 4.242
12 C 0.069 3.931
13 C -0.535 4.535
14 H 0.088 0.912
15 C -0.180 4.180
16 N -0.467 5.467
17 Si 0.805 3.195
18 H -0.189 1.189
19 H -0.190 1.190
20 H -0.187 1.187
21 C -0.176 4.176
22 C -0.140 4.140
23 N -0.360 5.360
24 C 0.406 3.594
25 O -0.461 6.461
26 N -0.349 5.349
27 C 0.311 3.689
28 O -0.354 6.354
29 H 0.095 0.905
30 H 0.085 0.915
31 H 0.128 0.872
32 H 0.102 0.898
33 H 0.143 0.857
34 H 0.090 0.910
35 H 0.073 0.927
36 H 0.135 0.865
37 H 0.149 0.851
38 H 0.255 0.745
39 H 0.123 0.877
40 H 0.113 0.887
41 H 0.096 0.904
42 H 0.125 0.875
43 H 0.143 0.857
44 H 0.301 0.699
45 H 0.279 0.721
Dipole moment (debyes) X Y Z Total
from point charges 4.259 -15.813 18.215 24.494
hybrid contribution 0.088 0.368 -0.793 0.879
sum 4.347 -15.445 17.422 23.685
Atomic orbital electron populations
1.22115 0.88940 1.04029 1.05804 1.21509 0.98075 0.94075 0.82619
1.21794 1.01945 0.89878 1.00523 1.21448 1.01890 0.93761 0.98069
1.21667 1.03814 0.95722 0.95027 1.21790 0.80462 0.81101 0.88556
1.90714 1.39389 1.67171 1.48475 1.43074 1.45526 1.11797 1.29173
1.17296 0.92876 1.00487 0.96187 1.20383 0.94034 0.98882 0.98150
1.20928 0.99068 1.04157 1.00073 1.17995 0.91792 0.90941 0.92402
1.19689 1.24355 0.97416 1.11999 0.91217 1.26661 0.93587 0.98073
0.99709 1.69830 1.29487 1.12531 1.34870 0.85171 0.78811 0.77907
0.77565 1.18901 1.18951 1.18696 1.20921 0.95261 1.01795 0.99666
1.20555 0.98775 0.98147 0.96568 1.45553 1.53231 1.27424 1.09810
1.15903 0.79534 0.82381 0.81579 1.91049 1.50498 1.43142 1.61438
1.44456 1.51043 1.30836 1.08598 1.21327 0.76845 0.80533 0.90188
1.90900 1.57244 1.68922 1.18374 0.90481 0.91540 0.87184 0.89837
0.85663 0.90983 0.92728 0.86463 0.85114 0.74463 0.87740 0.88723
0.90374 0.87533 0.85721 0.69857 0.72087
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.26 8.60 71.98 0.62 -0.64 16
2 C 0.13 1.24 1.09 2.99 0.00 1.24 16
3 C -0.10 -0.78 4.69 30.60 0.14 -0.64 16
4 C -0.11 -1.84 3.89 30.59 0.12 -1.72 16
5 C -0.12 -1.86 5.70 29.85 0.17 -1.69 16
6 C 0.49 14.55 7.54 87.66 0.66 15.21 16
7 O -0.58 -23.48 13.75 -3.06 -0.04 -23.52 16
8 N -0.65 -19.95 5.30 -303.11 -1.61 -21.56 16
9 C 0.03 1.08 6.26 38.56 0.24 1.32 16
10 C -0.09 -4.52 8.57 22.14 0.19 -4.33 16
11 C -0.22 -11.69 9.74 22.48 0.22 -11.47 16
12 C 0.07 3.96 5.50 -21.28 -0.12 3.84 16
13 C -0.50 -28.09 9.02 23.39 0.21 -27.88 16
14 H 0.07 3.80 7.85 -2.91 -0.02 3.78 16
15 C 0.03 1.65 5.31 85.24 0.45 2.11 16
16 N -0.84 -44.16 10.97 21.82 0.24 -43.92 16
17 Si 0.98 39.26 29.56 68.60 2.03 41.29 16
18 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16
19 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16
20 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16
21 C -0.16 -8.19 8.57 22.48 0.19 -8.00 16
22 C -0.12 -5.35 9.90 22.13 0.22 -5.13 16
23 N -0.69 -5.34 5.90 -439.80 -2.60 -7.94 16
24 C 0.71 10.49 9.00 179.44 1.61 12.10 16
25 O -0.58 -13.11 18.04 -3.85 -0.07 -13.17 16
26 N -0.68 -9.39 5.71 -440.67 -2.52 -11.90 16
27 C 0.52 8.66 7.27 87.89 0.64 9.30 16
28 O -0.48 -12.04 16.05 -2.89 -0.05 -12.09 16
29 H 0.08 0.97 6.52 -2.39 -0.02 0.95 16
30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16
31 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16
32 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16
33 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16
34 H 0.07 1.31 6.46 -2.39 -0.02 1.29 16
35 H 0.05 1.31 6.02 -2.39 -0.01 1.30 16
36 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16
37 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16
38 H 0.42 9.04 8.82 -92.71 -0.82 8.22 16
39 H 0.10 4.87 6.50 -2.91 -0.02 4.85 16
40 H 0.09 4.81 8.06 -2.91 -0.02 4.78 16
41 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16
42 H 0.11 5.79 6.47 -2.91 -0.02 5.77 16
43 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16
44 H 0.45 1.06 8.96 -92.71 -0.83 0.23 16
45 H 0.44 4.92 8.96 -92.70 -0.83 4.09 16
Total: -1.00 -80.74 377.12 -0.43 -81.17
By element:
Atomic # 1 Polarization: 29.43 SS G_CDS: -1.40 Total: 28.03 kcal
Atomic # 6 Polarization: -21.96 SS G_CDS: 5.58 Total: -16.38 kcal
Atomic # 7 Polarization: -78.84 SS G_CDS: -6.48 Total: -85.33 kcal
Atomic # 8 Polarization: -48.62 SS G_CDS: -0.16 Total: -48.78 kcal
Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal
Total: -80.74 -0.43 -81.17 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000269358670.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.665 kcal
(2) G-P(sol) polarization free energy of solvation -80.736 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.401 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.433 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.169 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.834 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds