Wall clock time and date at job start Wed Apr 1 2020 04:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31130 * 126.55421 * 2 1 4 4 C 1.34497 * 105.61412 * 180.11843 * 3 2 1 5 5 C 1.50703 * 126.28583 * 179.89824 * 4 3 2 6 6 C 1.53002 * 109.46657 * 59.71586 * 5 4 3 7 7 C 1.52996 * 109.47170 * 299.71880 * 5 4 3 8 8 N 1.46495 * 109.47062 * 179.71193 * 5 4 3 9 9 C 1.34783 * 119.99931 * 180.02562 * 8 5 4 10 10 O 1.21281 * 119.99796 * 0.02562 * 9 8 5 11 11 C 1.50697 * 119.99878 * 180.02562 * 9 8 5 12 12 C 1.50699 * 109.46970 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02075 * 12 11 9 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96952 * 89.99515 * 12 11 9 27 27 N 1.29939 * 107.42463 * 359.63934 * 4 3 2 28 28 O 1.21300 * 110.25660 * 0.22693 * 27 4 3 29 29 H 1.09003 * 109.47803 * 180.25408 * 1 2 3 30 30 H 1.08998 * 109.47603 * 300.25337 * 1 2 3 31 31 H 1.09000 * 109.47236 * 60.25260 * 1 2 3 32 32 H 1.09004 * 109.46961 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47434 * 299.99451 * 6 5 4 34 34 H 1.08997 * 109.47315 * 60.00077 * 6 5 4 35 35 H 1.08997 * 109.47273 * 299.99272 * 7 5 4 36 36 H 1.09002 * 109.47630 * 60.00115 * 7 5 4 37 37 H 1.09004 * 109.46946 * 179.97438 * 7 5 4 38 38 H 0.97001 * 120.00257 * 0.02562 * 8 5 4 39 39 H 1.08996 * 109.47386 * 59.99804 * 11 9 8 40 40 H 1.08997 * 109.47038 * 299.99640 * 11 9 8 41 41 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 42 42 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 44 44 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.03594 * 0.04940 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5440 0.5727 -0.0027 5 6 4.8112 1.3885 -0.0059 6 6 4.8489 2.2767 1.2393 7 6 4.8500 2.2653 -1.2591 8 7 5.9694 0.4915 -0.0013 9 6 7.2169 1.0018 -0.0026 10 8 7.3805 2.2035 -0.0072 11 6 8.4084 0.0791 0.0016 12 6 9.6755 0.8949 -0.0002 13 6 10.2571 1.2650 -1.1995 14 6 11.4200 2.0131 -1.2054 15 6 12.0008 2.3988 -0.0131 16 6 11.4225 2.0240 1.1925 17 8 11.9944 2.3964 2.3660 18 6 13.1853 3.0245 2.2945 19 1 13.6026 3.2829 1.3325 20 6 13.8742 3.3388 3.4560 21 7 15.0364 3.9513 3.3862 22 14 13.1526 2.8914 5.1199 23 1 13.6122 1.5343 5.5100 24 1 13.6020 3.8772 6.1356 25 1 11.6700 2.9071 5.0370 26 6 10.2544 1.2726 1.1950 27 7 3.4644 -0.7242 0.0037 28 8 2.3028 -1.0737 0.0053 29 1 -0.3635 -1.0276 0.0046 30 1 -0.3634 0.5177 0.8877 31 1 -0.3634 0.5099 -0.8922 32 1 5.7657 2.8665 1.2372 33 1 3.9872 2.9441 1.2359 34 1 4.8212 1.6521 2.1321 35 1 4.8231 1.6326 -2.1462 36 1 3.9882 2.9327 -1.2626 37 1 5.7663 2.8557 -1.2612 38 1 5.8386 -0.4696 0.0028 39 1 8.3815 -0.5531 -0.8858 40 1 8.3806 -0.5461 0.8940 41 1 9.8024 0.9684 -2.1331 42 1 11.8720 2.3002 -2.1434 43 1 12.9063 2.9875 -0.0183 44 1 15.5181 4.1715 4.1988 45 1 9.8000 0.9830 2.1311 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270555284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:58 Heat of formation + Delta-G solvation = 35.472723 kcal Electronic energy + Delta-G solvation = -29300.377594 eV Core-core repulsion = 25094.547411 eV Total energy + Delta-G solvation = -4205.830183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -46.06353 -40.34644 -39.05704 -37.39536 -36.50836 -35.49421 -33.50629 -32.63926 -32.30615 -31.25428 -29.44240 -29.34075 -27.53329 -27.05451 -25.33510 -25.08201 -23.10051 -22.12881 -21.57239 -20.45577 -19.76728 -18.60675 -18.23217 -17.65587 -17.18461 -16.91325 -16.21471 -15.49401 -15.12747 -14.98011 -14.62989 -14.61124 -14.13872 -14.02455 -13.96170 -13.75620 -13.69731 -13.62853 -13.39833 -12.67188 -12.63100 -12.55737 -12.42306 -12.27215 -12.12990 -12.00589 -11.90340 -11.64613 -11.44827 -11.41812 -11.25721 -10.80760 -10.76643 -10.67885 -10.37614 -10.12108 -9.66810 -9.34492 -9.28993 -8.82667 -8.10559 -7.31091 -6.36542 -4.03024 0.68602 1.75558 2.02786 2.33000 2.34799 2.66089 2.75063 3.15740 3.25440 3.28502 3.44443 3.63774 4.28176 4.38630 4.48527 4.61811 4.69901 4.74317 4.76546 4.78446 4.94514 4.99907 5.11141 5.19293 5.26810 5.35973 5.45255 5.49895 5.51264 5.57840 5.61735 5.62950 5.72975 5.88551 6.04478 6.10307 6.16563 6.27072 6.29927 6.57231 6.83373 7.14472 7.25732 7.34220 7.37239 7.65380 7.71088 7.85781 8.09327 8.21102 8.99102 9.62444 10.71319 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.002154 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.443056 B =12995.172388 C =13768.889738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.180 3.820 3 N -0.472 5.472 4 C 0.177 3.823 5 C 0.272 3.728 6 C -0.160 4.160 7 C -0.158 4.158 8 N -0.734 5.734 9 C 0.522 3.478 10 O -0.510 6.510 11 C -0.093 4.093 12 C -0.034 4.034 13 C -0.187 4.187 14 C -0.076 4.076 15 C -0.217 4.217 16 C 0.160 3.840 17 O -0.219 6.219 18 C -0.387 4.387 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.174 4.174 27 N -0.383 5.383 28 O 0.078 5.922 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.404 0.596 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.278 0.722 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.273 -10.615 -8.570 32.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.040 4.040 3 N -0.206 5.206 4 C -0.096 4.096 5 C 0.184 3.816 6 C -0.218 4.218 7 C -0.217 4.217 8 N -0.389 5.389 9 C 0.309 3.691 10 O -0.384 6.384 11 C -0.133 4.133 12 C -0.035 4.035 13 C -0.206 4.206 14 C -0.094 4.094 15 C -0.236 4.236 16 C 0.108 3.892 17 O -0.125 6.125 18 C -0.463 4.463 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.193 4.193 27 N -0.091 5.091 28 O 0.020 5.980 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.240 0.760 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -28.228 -9.746 -8.196 30.968 hybrid contribution -0.384 -0.679 0.659 1.021 sum -28.612 -10.425 -7.537 31.371 Atomic orbital electron populations 1.20417 0.79970 1.05745 1.05860 1.28927 0.99024 0.80494 0.95583 1.71793 0.99661 1.28781 1.20352 1.25778 0.95363 0.88126 1.00363 1.18376 0.77185 0.87292 0.98733 1.22242 1.05174 0.99748 0.94660 1.22225 1.05131 0.99784 0.94529 1.46114 1.04826 1.10139 1.77856 1.20711 0.83210 0.89867 0.75341 1.90704 1.85414 1.15295 1.46963 1.20585 0.90537 0.97354 1.04793 1.18622 0.93718 0.98082 0.93083 1.20415 0.98604 1.05461 0.96112 1.20733 0.95051 0.96634 0.97014 1.21295 1.03704 1.06692 0.91898 1.19008 0.92110 0.92164 0.85887 1.83568 1.34737 1.67553 1.26630 1.20759 0.93068 1.35639 0.96850 0.87664 1.24453 0.94724 0.95823 0.99049 1.69648 1.12908 1.39373 1.30035 0.86192 0.80638 0.78353 0.81788 1.19946 1.20829 1.18376 1.19934 0.97347 1.04724 0.97296 1.74491 0.97737 1.15371 1.21474 1.85295 1.11304 1.35701 1.65715 0.88368 0.87689 0.87701 0.88419 0.90776 0.92523 0.92602 0.90792 0.88495 0.76045 0.88191 0.88162 0.87744 0.87191 0.85007 0.91140 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.10 10.51 36.00 0.38 0.28 16 2 C 0.18 1.24 8.51 -13.06 -0.11 1.13 16 3 N -0.47 -4.62 11.55 -9.87 -0.11 -4.73 16 4 C 0.18 1.93 6.52 -156.38 -1.02 0.91 16 5 C 0.27 3.14 1.02 -132.97 -0.14 3.00 16 6 C -0.16 -1.92 8.38 37.16 0.31 -1.61 16 7 C -0.16 -1.80 8.38 37.16 0.31 -1.48 16 8 N -0.73 -8.39 5.10 -48.68 -0.25 -8.64 16 9 C 0.52 7.23 7.24 -10.98 -0.08 7.15 16 10 O -0.51 -8.93 12.24 5.56 0.07 -8.86 16 11 C -0.09 -1.19 5.83 -29.04 -0.17 -1.36 16 12 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 13 C -0.19 -3.27 9.70 -39.53 -0.38 -3.65 16 14 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 15 C -0.22 -4.88 9.17 -39.39 -0.36 -5.24 16 16 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 17 O -0.22 -5.99 8.59 0.05 0.00 -5.99 16 18 C -0.39 -11.20 9.95 30.89 0.31 -10.90 16 19 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 20 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 21 N -0.88 -25.93 13.96 55.48 0.77 -25.16 16 22 Si 0.90 22.21 28.62 -169.99 -4.86 17.35 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.17 -3.60 9.64 -39.40 -0.38 -3.98 16 27 N -0.38 -4.04 11.11 30.90 0.34 -3.70 16 28 O 0.08 0.67 11.31 18.09 0.20 0.88 16 29 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 30 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.10 0.06 8.14 -51.93 -0.42 -0.37 16 32 H 0.10 1.38 6.16 -51.93 -0.32 1.06 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.29 6.17 -51.93 -0.32 0.97 16 38 H 0.40 3.99 7.68 -40.82 -0.31 3.68 16 39 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 40 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 41 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 43 H 0.13 3.09 5.64 -52.49 -0.30 2.80 16 44 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -34.51 381.95 -6.36 -40.87 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.74 Total: 5.58 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.54 Total: -13.35 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.76 Total: -42.23 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.27 Total: -13.97 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.86 Total: 17.35 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.51 -6.36 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270555284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.341 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds