Wall clock time and date at job start Wed Apr 1 2020 04:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31130 * 126.55421 * 2 1 4 4 C 1.34497 * 105.61412 * 180.11843 * 3 2 1 5 5 C 1.50703 * 126.28583 * 179.89824 * 4 3 2 6 6 C 1.53002 * 109.46657 * 59.71586 * 5 4 3 7 7 C 1.52996 * 109.47170 * 299.71880 * 5 4 3 8 8 N 1.46495 * 109.47062 * 179.71193 * 5 4 3 9 9 C 1.34783 * 119.99931 * 180.02562 * 8 5 4 10 10 O 1.21281 * 119.99796 * 0.02562 * 9 8 5 11 11 C 1.50697 * 119.99878 * 180.02562 * 9 8 5 12 12 C 1.50699 * 109.46970 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02075 * 12 11 9 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96952 * 89.99515 * 12 11 9 27 27 N 1.29939 * 107.42463 * 359.63934 * 4 3 2 28 28 O 1.21300 * 110.25660 * 0.22693 * 27 4 3 29 29 H 1.09003 * 109.47803 * 180.25408 * 1 2 3 30 30 H 1.08998 * 109.47603 * 300.25337 * 1 2 3 31 31 H 1.09000 * 109.47236 * 60.25260 * 1 2 3 32 32 H 1.09004 * 109.46961 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47434 * 299.99451 * 6 5 4 34 34 H 1.08997 * 109.47315 * 60.00077 * 6 5 4 35 35 H 1.08997 * 109.47273 * 299.99272 * 7 5 4 36 36 H 1.09002 * 109.47630 * 60.00115 * 7 5 4 37 37 H 1.09004 * 109.46946 * 179.97438 * 7 5 4 38 38 H 0.97001 * 120.00257 * 0.02562 * 8 5 4 39 39 H 1.08996 * 109.47386 * 59.99804 * 11 9 8 40 40 H 1.08997 * 109.47038 * 299.99640 * 11 9 8 41 41 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 42 42 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 44 44 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.03594 * 0.04940 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5440 0.5727 -0.0027 5 6 4.8112 1.3885 -0.0059 6 6 4.8489 2.2767 1.2393 7 6 4.8500 2.2653 -1.2591 8 7 5.9694 0.4915 -0.0013 9 6 7.2169 1.0018 -0.0026 10 8 7.3805 2.2035 -0.0072 11 6 8.4084 0.0791 0.0016 12 6 9.6755 0.8949 -0.0002 13 6 10.2571 1.2650 -1.1995 14 6 11.4200 2.0131 -1.2054 15 6 12.0008 2.3988 -0.0131 16 6 11.4225 2.0240 1.1925 17 8 11.9944 2.3964 2.3660 18 6 13.1853 3.0245 2.2945 19 1 13.6026 3.2829 1.3325 20 6 13.8742 3.3388 3.4560 21 7 15.0364 3.9513 3.3862 22 14 13.1526 2.8914 5.1199 23 1 13.6122 1.5343 5.5100 24 1 13.6020 3.8772 6.1356 25 1 11.6700 2.9071 5.0370 26 6 10.2544 1.2726 1.1950 27 7 3.4644 -0.7242 0.0037 28 8 2.3028 -1.0737 0.0053 29 1 -0.3635 -1.0276 0.0046 30 1 -0.3634 0.5177 0.8877 31 1 -0.3634 0.5099 -0.8922 32 1 5.7657 2.8665 1.2372 33 1 3.9872 2.9441 1.2359 34 1 4.8212 1.6521 2.1321 35 1 4.8231 1.6326 -2.1462 36 1 3.9882 2.9327 -1.2626 37 1 5.7663 2.8557 -1.2612 38 1 5.8386 -0.4696 0.0028 39 1 8.3815 -0.5531 -0.8858 40 1 8.3806 -0.5461 0.8940 41 1 9.8024 0.9684 -2.1331 42 1 11.8720 2.3002 -2.1434 43 1 12.9063 2.9875 -0.0183 44 1 15.5181 4.1715 4.1988 45 1 9.8000 0.9830 2.1311 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270555284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:57 Heat of formation + Delta-G solvation = 10.459741 kcal Electronic energy + Delta-G solvation = -29301.462239 eV Core-core repulsion = 25094.547411 eV Total energy + Delta-G solvation = -4206.914828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -46.73421 -41.47553 -40.72514 -38.66456 -37.84942 -36.26560 -34.48874 -34.16826 -33.77972 -32.42283 -31.05187 -29.78169 -28.47104 -28.39859 -27.17389 -26.08221 -23.79195 -23.46952 -22.98190 -21.85111 -20.76449 -19.69217 -19.27397 -19.18942 -18.63959 -17.89846 -17.17587 -16.88229 -16.79542 -16.15430 -15.77690 -15.65644 -15.55680 -15.37192 -15.10504 -14.92048 -14.80458 -14.39094 -14.18542 -14.16041 -14.09044 -13.93951 -13.41125 -13.32437 -13.07440 -13.01229 -12.90196 -12.87414 -12.57921 -12.50952 -12.44362 -12.37008 -12.31785 -12.13702 -11.93883 -11.31670 -11.00851 -10.92827 -10.80472 -10.28159 -9.67755 -9.06819 -8.50646 -6.23141 0.09037 0.47048 0.69852 1.06398 1.28751 1.33241 1.50089 1.60108 1.82152 1.86915 2.27048 2.39104 2.76081 3.01341 3.04583 3.15547 3.58105 3.74331 3.83570 3.99146 4.02881 4.07451 4.28767 4.40787 4.41408 4.52383 4.57236 4.58032 4.60876 4.64694 4.65053 4.66682 4.67645 4.70247 4.92325 4.96190 5.09151 5.12628 5.16971 5.23936 5.31613 5.39171 5.64614 5.72257 5.76405 5.91080 6.23762 6.42983 6.83686 7.04526 7.20768 7.58848 8.61123 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.002154 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.443056 B =12995.172388 C =13768.889738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.195 3.805 3 N -0.499 5.499 4 C 0.166 3.834 5 C 0.271 3.729 6 C -0.153 4.153 7 C -0.150 4.150 8 N -0.719 5.719 9 C 0.524 3.476 10 O -0.553 6.553 11 C -0.090 4.090 12 C -0.026 4.026 13 C -0.169 4.169 14 C -0.077 4.077 15 C -0.239 4.239 16 C 0.118 3.882 17 O -0.247 6.247 18 C -0.399 4.399 19 H 0.080 0.920 20 C 0.009 3.991 21 N -0.923 5.923 22 Si 0.971 3.029 23 H -0.263 1.263 24 H -0.266 1.266 25 H -0.267 1.267 26 C -0.180 4.180 27 N -0.396 5.396 28 O 0.079 5.921 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.415 0.585 39 H 0.141 0.859 40 H 0.124 0.876 41 H 0.148 0.852 42 H 0.140 0.860 43 H 0.107 0.893 44 H 0.285 0.715 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.145 -13.197 -9.611 36.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.024 4.024 3 N -0.233 5.233 4 C -0.108 4.108 5 C 0.183 3.817 6 C -0.212 4.212 7 C -0.209 4.209 8 N -0.374 5.374 9 C 0.311 3.689 10 O -0.430 6.430 11 C -0.129 4.129 12 C -0.027 4.027 13 C -0.187 4.187 14 C -0.095 4.095 15 C -0.258 4.258 16 C 0.070 3.930 17 O -0.155 6.155 18 C -0.475 4.475 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.793 3.207 23 H -0.187 1.187 24 H -0.191 1.191 25 H -0.192 1.192 26 C -0.199 4.199 27 N -0.105 5.105 28 O 0.020 5.980 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.252 0.748 39 H 0.159 0.841 40 H 0.142 0.858 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.125 0.875 44 H 0.094 0.906 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -32.144 -12.368 -9.273 35.668 hybrid contribution 0.529 0.008 0.699 0.877 sum -31.615 -12.360 -8.574 35.011 Atomic orbital electron populations 1.20802 0.76226 1.07870 1.07070 1.29916 1.00491 0.79232 0.92776 1.71797 0.99565 1.29992 1.21996 1.25584 0.95437 0.88352 1.01401 1.18301 0.77719 0.87423 0.98300 1.22138 1.04227 0.99727 0.95091 1.22116 1.04308 0.99704 0.94739 1.45950 1.04208 1.10706 1.76578 1.20834 0.84022 0.89302 0.74697 1.90718 1.86022 1.17067 1.49152 1.20686 0.87296 0.96855 1.08084 1.19124 0.94876 0.96860 0.91792 1.20996 0.97085 1.02691 0.97919 1.21105 0.95532 0.96143 0.96739 1.21321 1.03619 1.07611 0.93251 1.19587 0.93698 0.94127 0.85615 1.83507 1.34372 1.69348 1.28297 1.20706 0.94179 1.36314 0.96295 0.90246 1.25278 0.95141 0.95883 1.02629 1.69729 1.14255 1.41120 1.31282 0.85222 0.79143 0.78868 0.77487 1.18738 1.19061 1.19185 1.20250 0.96236 1.04148 0.99236 1.74457 0.98889 1.15125 1.22000 1.85265 1.10962 1.36092 1.65721 0.85849 0.86355 0.86177 0.90810 0.90011 0.92678 0.92052 0.90145 0.90556 0.74831 0.84090 0.85758 0.83455 0.84178 0.87504 0.90584 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.03 10.51 71.23 0.75 0.78 16 2 C 0.20 2.17 8.51 88.38 0.75 2.92 16 3 N -0.50 -8.80 11.55 -303.20 -3.50 -12.30 16 4 C 0.17 3.31 6.52 138.46 0.90 4.22 16 5 C 0.27 5.88 1.02 2.86 0.00 5.88 16 6 C -0.15 -3.62 8.38 71.98 0.60 -3.01 16 7 C -0.15 -3.25 8.38 71.98 0.60 -2.64 16 8 N -0.72 -14.81 5.10 -426.33 -2.17 -16.98 16 9 C 0.52 13.27 7.24 87.66 0.63 13.90 16 10 O -0.55 -18.82 12.24 -3.03 -0.04 -18.85 16 11 C -0.09 -1.94 5.83 29.10 0.17 -1.78 16 12 C -0.03 -0.84 4.37 -19.88 -0.09 -0.93 16 13 C -0.17 -5.33 9.70 22.30 0.22 -5.12 16 14 C -0.08 -2.84 10.04 22.25 0.22 -2.61 16 15 C -0.24 -11.19 9.17 22.39 0.21 -10.99 16 16 C 0.12 5.92 6.65 22.58 0.15 6.07 16 17 O -0.25 -14.20 8.59 -22.74 -0.20 -14.39 16 18 C -0.40 -24.52 9.95 67.92 0.68 -23.85 16 19 H 0.08 5.12 5.44 -2.91 -0.02 5.10 16 20 C 0.01 0.53 5.49 84.83 0.47 1.00 16 21 N -0.92 -56.68 13.96 21.61 0.30 -56.38 16 22 Si 0.97 47.19 28.62 68.60 1.96 49.16 16 23 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 25 H -0.27 -13.16 7.11 99.48 0.71 -12.46 16 26 C -0.18 -7.38 9.64 22.39 0.22 -7.16 16 27 N -0.40 -7.50 11.11 -60.32 -0.67 -8.17 16 28 O 0.08 1.15 11.31 74.78 0.85 2.00 16 29 H 0.12 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.12 -0.33 8.14 -2.39 -0.02 -0.34 16 32 H 0.07 2.13 6.16 -2.38 -0.01 2.11 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 2.00 6.17 -2.38 -0.01 1.99 16 38 H 0.41 6.94 7.68 -92.71 -0.71 6.23 16 39 H 0.14 1.98 8.09 -2.39 -0.02 1.96 16 40 H 0.12 2.19 8.08 -2.39 -0.02 2.17 16 41 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 42 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 43 H 0.11 5.46 5.64 -2.91 -0.02 5.45 16 44 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 45 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -80.77 381.95 3.35 -77.42 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.33 Total: 21.82 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 6.48 Total: -23.32 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -6.04 Total: -93.82 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: 0.61 Total: -31.25 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.96 Total: 49.16 kcal Total: -80.77 3.35 -77.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270555284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.884 kcal (2) G-P(sol) polarization free energy of solvation -80.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds