Wall clock time and date at job start Wed Apr 1 2020 03:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35658 * 117.00058 * 2 1 4 4 C 1.38535 * 120.12539 * 0.27640 * 3 2 1 5 5 C 1.38247 * 120.24030 * 180.32234 * 4 3 2 6 6 C 1.38242 * 120.48397 * 359.67733 * 5 4 3 7 7 C 1.38550 * 120.23738 * 0.02562 * 6 5 4 8 8 O 1.35664 * 120.12137 * 180.02562 * 7 6 5 9 9 C 1.42895 * 117.00006 * 359.97438 * 8 7 6 10 10 C 1.40258 * 120.11887 * 180.02562 * 3 2 1 11 11 C 1.47218 * 120.24069 * 359.96948 * 10 3 2 12 12 O 1.21638 * 120.00136 * 269.73013 * 11 10 3 13 13 N 1.34773 * 119.99628 * 89.72494 * 11 10 3 14 14 C 1.40102 * 120.00194 * 180.02562 * 13 11 10 15 15 C 1.40424 * 125.97265 * 0.27826 * 14 13 11 16 16 C 1.35232 * 107.86568 * 180.16415 * 15 14 13 17 17 C 1.50703 * 126.06766 * 179.84878 * 16 15 14 18 18 N 1.34973 * 107.86541 * 359.58490 * 16 15 14 19 19 C 1.46497 * 125.97532 * 180.23120 * 18 16 15 20 20 C 1.50694 * 109.47559 * 89.99685 * 19 18 16 21 21 H 1.08005 * 119.99538 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00366 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99653 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46943 * 59.99938 * 24 22 20 26 26 H 1.48494 * 109.47015 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47297 * 300.00162 * 24 22 20 28 28 N 1.31229 * 125.97768 * 179.97438 * 14 13 11 29 29 H 1.09001 * 109.46809 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46792 * 299.99767 * 1 2 3 31 31 H 1.08998 * 109.46695 * 59.99660 * 1 2 3 32 32 H 1.08004 * 119.87926 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.75762 * 179.69617 * 5 4 3 34 34 H 1.08004 * 119.88517 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.47096 * 179.97438 * 9 8 7 36 36 H 1.08994 * 109.47283 * 299.99786 * 9 8 7 37 37 H 1.09004 * 109.47570 * 59.99791 * 9 8 7 38 38 H 0.97008 * 120.00509 * 0.02562 * 13 11 10 39 39 H 1.07998 * 126.06357 * 0.02562 * 15 14 13 40 40 H 1.09002 * 109.47152 * 269.68932 * 17 16 15 41 41 H 1.09001 * 109.46980 * 149.69032 * 17 16 15 42 42 H 1.09004 * 109.47113 * 29.69013 * 17 16 15 43 43 H 1.09005 * 109.46929 * 209.99904 * 19 18 16 44 44 H 1.09004 * 109.46704 * 329.99710 * 19 18 16 45 45 H 0.96998 * 120.00028 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2930 2.3722 0.0058 5 6 1.9181 3.6053 -0.0009 6 6 3.2978 3.6921 -0.0067 7 6 4.0693 2.5412 -0.0064 8 8 5.4231 2.6291 -0.0116 9 6 5.9879 3.9417 -0.0178 10 6 3.4455 1.2850 -0.0005 11 6 4.2550 0.0554 -0.0004 12 8 4.5940 -0.4495 1.0530 13 7 4.6204 -0.5109 -1.1676 14 6 5.3903 -1.6813 -1.1676 15 6 5.8438 -2.3704 -0.0312 16 6 6.5532 -3.4422 -0.4515 17 6 7.2287 -4.4605 0.4306 18 7 6.5440 -3.4415 -1.8012 19 6 7.1901 -4.4312 -2.6668 20 6 6.2252 -5.5520 -2.9558 21 1 5.2299 -5.5292 -2.5370 22 6 6.6125 -6.6061 -3.7558 23 7 7.8243 -6.6335 -4.2662 24 14 5.4162 -7.9951 -4.1147 25 1 4.2148 -7.4499 -4.7964 26 1 6.0712 -8.9983 -4.9920 27 1 5.0116 -8.6415 -2.8405 28 7 5.8091 -2.3286 -2.2296 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2144 2.3158 0.0099 33 1 1.3242 4.5074 -0.0013 34 1 3.7761 4.6604 -0.0115 35 1 7.0755 3.8692 -0.0211 36 1 5.6564 4.4757 -0.9083 37 1 5.6628 4.4815 0.8716 38 1 4.3503 -0.1080 -2.0077 39 1 5.6607 -2.0922 0.9962 40 1 8.2501 -4.1412 0.6376 41 1 7.2452 -5.4257 -0.0756 42 1 6.6793 -4.5510 1.3676 43 1 7.4870 -3.9569 -3.6023 44 1 8.0720 -4.8310 -2.1662 45 1 8.0969 -7.3752 -4.8287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271030842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:16 Heat of formation + Delta-G solvation = 3.431759 kcal Electronic energy + Delta-G solvation = -29769.568150 eV Core-core repulsion = 25562.348566 eV Total energy + Delta-G solvation = -4207.219584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.11695 -40.40368 -39.37841 -38.71038 -36.67642 -34.63335 -33.30779 -31.91384 -31.13923 -30.60345 -29.93622 -28.15677 -27.18816 -26.59843 -26.22635 -24.44740 -22.80928 -22.09163 -21.31919 -19.65135 -19.50480 -18.71781 -17.16234 -17.10355 -16.73225 -16.61558 -16.38991 -15.93202 -15.82743 -15.38951 -15.14700 -15.11325 -14.68115 -14.27361 -13.93365 -13.83233 -13.25482 -13.08496 -12.97611 -12.83706 -12.41752 -12.40625 -12.22659 -12.01617 -11.84985 -11.82455 -11.62854 -11.40615 -11.33599 -11.07219 -11.01140 -10.77428 -10.35575 -10.16957 -9.83125 -9.51021 -9.44626 -8.80884 -8.59386 -8.49547 -7.81083 -7.33030 -6.20490 -4.28002 0.80821 1.06949 2.45013 2.52523 2.92154 3.02869 3.26845 3.30152 3.31341 3.31481 3.35394 3.85392 3.96181 4.33815 4.39609 4.60843 4.64840 4.73578 4.79390 4.85547 4.88242 4.93869 4.97384 5.12778 5.20465 5.23856 5.31436 5.56123 5.75159 5.81158 5.83049 6.02093 6.03877 6.05732 6.18268 6.37169 6.57737 6.69092 6.84499 6.94746 7.00157 7.03310 7.12630 7.58540 7.72322 7.79766 7.95113 8.15522 8.43027 8.75032 8.83005 9.38019 10.86603 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.002655 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.785984 B =10543.201274 C =11522.493754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.302 6.302 3 C 0.204 3.796 4 C -0.250 4.250 5 C -0.022 4.022 6 C -0.250 4.250 7 C 0.203 3.797 8 O -0.303 6.303 9 C 0.027 3.973 10 C -0.194 4.194 11 C 0.593 3.407 12 O -0.507 6.507 13 N -0.620 5.620 14 C 0.268 3.732 15 C -0.288 4.288 16 C 0.090 3.910 17 C -0.088 4.088 18 N -0.318 5.318 19 C 0.259 3.741 20 C -0.535 4.535 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.893 5.893 24 Si 0.906 3.094 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.274 1.274 28 N -0.321 5.321 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.409 0.591 39 H 0.158 0.842 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.260 22.449 9.334 26.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.156 3.844 4 C -0.269 4.269 5 C -0.040 4.040 6 C -0.269 4.269 7 C 0.156 3.844 8 O -0.215 6.215 9 C -0.068 4.068 10 C -0.199 4.199 11 C 0.378 3.622 12 O -0.380 6.380 13 N -0.267 5.267 14 C 0.016 3.984 15 C -0.319 4.319 16 C -0.041 4.041 17 C -0.146 4.146 18 N -0.101 5.101 19 C 0.142 3.858 20 C -0.574 4.574 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.531 5.531 24 Si 0.733 3.267 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 N -0.152 5.152 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.244 0.756 39 H 0.176 0.824 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.579 21.506 8.628 25.473 hybrid contribution -1.100 -0.059 -0.015 1.102 sum -11.680 21.448 8.613 25.896 Atomic orbital electron populations 1.23182 0.77375 1.04690 1.01536 1.86145 1.22117 1.25996 1.87146 1.18534 0.89664 0.85022 0.91187 1.21066 1.00361 0.91707 1.13723 1.20796 0.93661 0.97177 0.92410 1.21060 0.94736 0.97298 1.13791 1.18523 0.82873 0.91750 0.91295 1.86133 1.16827 1.31286 1.87219 1.23173 0.99821 0.82229 1.01558 1.18063 0.90685 0.92011 1.19107 1.17450 0.78780 0.82785 0.83215 1.90728 1.53665 1.62375 1.31187 1.42402 1.51124 1.23749 1.09392 1.18970 0.97033 0.89202 0.93238 1.21253 1.11587 0.99395 0.99693 1.21040 0.99970 0.97702 0.85404 1.20368 0.99349 0.97175 0.97720 1.48965 1.38068 1.18720 1.04320 1.19656 0.92641 0.83879 0.89662 1.21312 0.99757 1.04628 1.31703 0.91781 1.24925 0.95581 0.98249 0.95029 1.69914 1.17813 1.32332 1.33007 0.86415 0.80833 0.80987 0.78457 1.20002 1.20997 1.19930 1.77256 1.17169 1.00609 1.20176 0.87683 0.92214 0.92166 0.84605 0.84997 0.84621 0.87730 0.92180 0.92226 0.75593 0.82412 0.91140 0.89962 0.90661 0.93057 0.92847 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.30 -3.92 9.95 -18.68 -0.19 -4.10 16 3 C 0.20 2.52 6.70 -38.71 -0.26 2.26 16 4 C -0.25 -2.21 9.02 -39.47 -0.36 -2.56 16 5 C -0.02 -0.17 10.02 -39.58 -0.40 -0.56 16 6 C -0.25 -2.17 9.03 -39.46 -0.36 -2.53 16 7 C 0.20 2.47 6.70 -38.71 -0.26 2.21 16 8 O -0.30 -3.77 9.95 -18.69 -0.19 -3.96 16 9 C 0.03 0.19 9.81 101.05 0.99 1.18 16 10 C -0.19 -2.79 5.65 -104.73 -0.59 -3.39 16 11 C 0.59 10.78 6.28 -12.61 -0.08 10.70 16 12 O -0.51 -10.73 14.23 5.24 0.07 -10.66 16 13 N -0.62 -11.54 5.44 -12.16 -0.07 -11.61 16 14 C 0.27 6.01 8.11 -154.43 -1.25 4.76 16 15 C -0.29 -6.46 9.52 -39.83 -0.38 -6.84 16 16 C 0.09 2.02 6.92 -82.28 -0.57 1.45 16 17 C -0.09 -1.59 9.89 36.01 0.36 -1.24 16 18 N -0.32 -7.93 3.59 -58.33 -0.21 -8.14 16 19 C 0.26 6.87 5.81 -5.20 -0.03 6.84 16 20 C -0.54 -15.12 9.39 -34.44 -0.32 -15.45 16 21 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 23 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 24 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 N -0.32 -7.91 12.59 31.43 0.40 -7.51 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 31 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 32 H 0.14 0.83 6.28 -52.48 -0.33 0.50 16 33 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 34 H 0.14 0.80 6.28 -52.48 -0.33 0.47 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 37 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 38 H 0.41 6.55 8.81 -40.82 -0.36 6.19 16 39 H 0.16 3.49 5.91 -52.49 -0.31 3.18 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.58 7.71 -51.93 -0.40 1.18 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.05 1.39 7.65 -51.93 -0.40 1.00 16 45 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 386.17 15.07 5.82 5.82 Total: -1.00 -36.18 386.17 -7.05 -43.23 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.80 Total: 5.49 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.61 Total: -0.25 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.86 Total: -52.03 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.30 Total: -18.72 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.18 -7.05 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271030842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.665 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds