Wall clock time and date at job start Wed Apr 1 2020 03:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35658 * 117.00058 * 2 1 4 4 C 1.38535 * 120.12539 * 0.27640 * 3 2 1 5 5 C 1.38247 * 120.24030 * 180.32234 * 4 3 2 6 6 C 1.38242 * 120.48397 * 359.67733 * 5 4 3 7 7 C 1.38550 * 120.23738 * 0.02562 * 6 5 4 8 8 O 1.35664 * 120.12137 * 180.02562 * 7 6 5 9 9 C 1.42895 * 117.00006 * 359.97438 * 8 7 6 10 10 C 1.40258 * 120.11887 * 180.02562 * 3 2 1 11 11 C 1.47218 * 120.24069 * 359.96948 * 10 3 2 12 12 O 1.21638 * 120.00136 * 269.73013 * 11 10 3 13 13 N 1.34773 * 119.99628 * 89.72494 * 11 10 3 14 14 C 1.40102 * 120.00194 * 180.02562 * 13 11 10 15 15 C 1.40424 * 125.97265 * 0.27826 * 14 13 11 16 16 C 1.35232 * 107.86568 * 180.16415 * 15 14 13 17 17 C 1.50703 * 126.06766 * 179.84878 * 16 15 14 18 18 N 1.34973 * 107.86541 * 359.58490 * 16 15 14 19 19 C 1.46497 * 125.97532 * 180.23120 * 18 16 15 20 20 C 1.50694 * 109.47559 * 89.99685 * 19 18 16 21 21 H 1.08005 * 119.99538 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00366 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99653 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46943 * 59.99938 * 24 22 20 26 26 H 1.48494 * 109.47015 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47297 * 300.00162 * 24 22 20 28 28 N 1.31229 * 125.97768 * 179.97438 * 14 13 11 29 29 H 1.09001 * 109.46809 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46792 * 299.99767 * 1 2 3 31 31 H 1.08998 * 109.46695 * 59.99660 * 1 2 3 32 32 H 1.08004 * 119.87926 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.75762 * 179.69617 * 5 4 3 34 34 H 1.08004 * 119.88517 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.47096 * 179.97438 * 9 8 7 36 36 H 1.08994 * 109.47283 * 299.99786 * 9 8 7 37 37 H 1.09004 * 109.47570 * 59.99791 * 9 8 7 38 38 H 0.97008 * 120.00509 * 0.02562 * 13 11 10 39 39 H 1.07998 * 126.06357 * 0.02562 * 15 14 13 40 40 H 1.09002 * 109.47152 * 269.68932 * 17 16 15 41 41 H 1.09001 * 109.46980 * 149.69032 * 17 16 15 42 42 H 1.09004 * 109.47113 * 29.69013 * 17 16 15 43 43 H 1.09005 * 109.46929 * 209.99904 * 19 18 16 44 44 H 1.09004 * 109.46704 * 329.99710 * 19 18 16 45 45 H 0.96998 * 120.00028 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2930 2.3722 0.0058 5 6 1.9181 3.6053 -0.0009 6 6 3.2978 3.6921 -0.0067 7 6 4.0693 2.5412 -0.0064 8 8 5.4231 2.6291 -0.0116 9 6 5.9879 3.9417 -0.0178 10 6 3.4455 1.2850 -0.0005 11 6 4.2550 0.0554 -0.0004 12 8 4.5940 -0.4495 1.0530 13 7 4.6204 -0.5109 -1.1676 14 6 5.3903 -1.6813 -1.1676 15 6 5.8438 -2.3704 -0.0312 16 6 6.5532 -3.4422 -0.4515 17 6 7.2287 -4.4605 0.4306 18 7 6.5440 -3.4415 -1.8012 19 6 7.1901 -4.4312 -2.6668 20 6 6.2252 -5.5520 -2.9558 21 1 5.2299 -5.5292 -2.5370 22 6 6.6125 -6.6061 -3.7558 23 7 7.8243 -6.6335 -4.2662 24 14 5.4162 -7.9951 -4.1147 25 1 4.2148 -7.4499 -4.7964 26 1 6.0712 -8.9983 -4.9920 27 1 5.0116 -8.6415 -2.8405 28 7 5.8091 -2.3286 -2.2296 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2144 2.3158 0.0099 33 1 1.3242 4.5074 -0.0013 34 1 3.7761 4.6604 -0.0115 35 1 7.0755 3.8692 -0.0211 36 1 5.6564 4.4757 -0.9083 37 1 5.6628 4.4815 0.8716 38 1 4.3503 -0.1080 -2.0077 39 1 5.6607 -2.0922 0.9962 40 1 8.2501 -4.1412 0.6376 41 1 7.2452 -5.4257 -0.0756 42 1 6.6793 -4.5510 1.3676 43 1 7.4870 -3.9569 -3.6023 44 1 8.0720 -4.8310 -2.1662 45 1 8.0969 -7.3752 -4.8287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271030842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:15 Heat of formation + Delta-G solvation = -21.422513 kcal Electronic energy + Delta-G solvation = -29770.645912 eV Core-core repulsion = 25562.348566 eV Total energy + Delta-G solvation = -4208.297346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.41101 -41.75731 -40.15593 -40.11844 -37.42180 -36.34098 -35.30825 -33.28668 -32.72421 -32.15732 -30.64675 -28.75780 -28.67981 -27.90026 -27.71183 -25.73757 -24.58859 -22.80961 -22.66588 -21.31619 -20.99342 -19.67221 -18.81385 -18.29765 -17.97212 -17.80708 -17.48073 -17.21981 -16.83484 -16.52350 -16.44216 -16.30478 -15.98233 -15.81374 -15.40067 -15.11224 -14.69548 -14.34774 -14.08755 -13.84266 -13.66942 -13.62672 -13.59643 -13.55065 -13.17355 -13.01997 -12.85609 -12.68346 -12.44799 -12.42137 -12.27524 -12.15353 -12.12035 -11.70010 -11.57495 -11.37710 -11.00678 -10.73851 -9.69414 -9.61450 -9.20417 -9.17423 -8.33363 -6.51254 0.02233 0.33724 0.84552 1.30830 1.38293 1.39058 1.39780 1.49628 1.83052 2.15508 2.27359 2.39288 2.57798 2.63379 2.96142 3.44613 3.82588 3.94493 3.98071 4.02882 4.11552 4.21365 4.35898 4.38074 4.38976 4.40353 4.44395 4.47063 4.72044 4.74038 4.74788 4.76435 4.85028 4.95608 4.98074 5.08106 5.10311 5.15345 5.22219 5.35785 5.44066 5.52773 5.80066 5.88601 6.18637 6.24537 6.24659 6.31796 6.60731 6.93466 7.03901 7.19546 8.72730 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.002655 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.785984 B =10543.201274 C =11522.493754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.341 6.341 3 C 0.189 3.811 4 C -0.243 4.243 5 C -0.007 4.007 6 C -0.243 4.243 7 C 0.190 3.810 8 O -0.340 6.340 9 C 0.017 3.983 10 C -0.233 4.233 11 C 0.596 3.404 12 O -0.545 6.545 13 N -0.616 5.616 14 C 0.273 3.727 15 C -0.301 4.301 16 C 0.091 3.909 17 C -0.084 4.084 18 N -0.340 5.340 19 C 0.276 3.724 20 C -0.556 4.556 21 H 0.048 0.952 22 C 0.024 3.976 23 N -0.917 5.917 24 Si 0.972 3.028 25 H -0.276 1.276 26 H -0.271 1.271 27 H -0.265 1.265 28 N -0.357 5.357 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.167 0.833 33 H 0.177 0.823 34 H 0.168 0.832 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.419 0.581 39 H 0.161 0.839 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.025 0.975 44 H 0.054 0.946 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 24.425 9.946 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.142 3.858 4 C -0.262 4.262 5 C -0.025 4.025 6 C -0.261 4.261 7 C 0.143 3.857 8 O -0.253 6.253 9 C -0.076 4.076 10 C -0.238 4.238 11 C 0.384 3.616 12 O -0.421 6.421 13 N -0.264 5.264 14 C 0.019 3.981 15 C -0.332 4.332 16 C -0.040 4.040 17 C -0.142 4.142 18 N -0.123 5.123 19 C 0.157 3.843 20 C -0.594 4.594 21 H 0.067 0.933 22 C -0.177 4.177 23 N -0.556 5.556 24 Si 0.795 3.205 25 H -0.201 1.201 26 H -0.195 1.195 27 H -0.190 1.190 28 N -0.187 5.187 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.184 0.816 33 H 0.195 0.805 34 H 0.185 0.815 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.256 0.744 39 H 0.179 0.821 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.684 23.518 9.238 28.273 hybrid contribution -0.484 -0.512 -0.159 0.723 sum -13.169 23.007 9.079 28.020 Atomic orbital electron populations 1.23471 0.75093 1.05609 1.03435 1.86085 1.24714 1.27162 1.87451 1.18761 0.89110 0.86055 0.91920 1.21444 1.01695 0.90810 1.12239 1.21365 0.93480 0.98233 0.89394 1.21450 0.95247 0.97235 1.12194 1.18739 0.83137 0.91970 0.91856 1.86079 1.17445 1.34315 1.87433 1.23478 1.00083 0.80670 1.03408 1.18063 0.91451 0.90884 1.23422 1.18210 0.77878 0.83407 0.82119 1.90670 1.55232 1.63861 1.32325 1.42607 1.50567 1.22650 1.10529 1.19322 0.96179 0.89781 0.92795 1.21394 1.12152 0.99786 0.99830 1.21734 0.99195 0.98223 0.84819 1.20510 1.00767 0.95233 0.97732 1.48818 1.39298 1.19100 1.05063 1.19269 0.92548 0.83639 0.88843 1.21410 0.99410 1.05855 1.32715 0.93341 1.25738 0.97288 1.00405 0.94310 1.69995 1.19225 1.33239 1.33095 0.85403 0.78418 0.77967 0.78694 1.20101 1.19530 1.18988 1.77178 1.18742 1.01415 1.21401 0.87472 0.90272 0.90152 0.81580 0.80550 0.81474 0.87284 0.90164 0.90367 0.74440 0.82123 0.88703 0.91130 0.88026 0.95733 0.92839 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.89 9.95 -89.74 -0.89 -9.79 16 3 C 0.19 4.55 6.70 22.83 0.15 4.70 16 4 C -0.24 -3.52 9.02 22.34 0.20 -3.32 16 5 C -0.01 -0.07 10.02 22.27 0.22 0.15 16 6 C -0.24 -3.42 9.03 22.35 0.20 -3.22 16 7 C 0.19 4.48 6.70 22.84 0.15 4.64 16 8 O -0.34 -8.48 9.95 -89.80 -0.89 -9.37 16 9 C 0.02 0.22 9.81 113.37 1.11 1.33 16 10 C -0.23 -6.84 5.65 -19.94 -0.11 -6.95 16 11 C 0.60 22.72 6.28 86.60 0.54 23.27 16 12 O -0.55 -24.29 14.23 -4.15 -0.06 -24.35 16 13 N -0.62 -24.14 5.44 -310.64 -1.69 -25.83 16 14 C 0.27 12.81 8.11 133.35 1.08 13.90 16 15 C -0.30 -13.99 9.52 22.11 0.21 -13.78 16 16 C 0.09 4.19 6.92 41.38 0.29 4.47 16 17 C -0.08 -3.05 9.89 71.24 0.70 -2.34 16 18 N -0.34 -17.68 3.59 -338.45 -1.22 -18.90 16 19 C 0.28 15.24 5.81 85.63 0.50 15.74 16 20 C -0.56 -32.28 9.39 25.60 0.24 -32.04 16 21 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 22 C 0.02 1.33 5.46 84.66 0.46 1.79 16 23 N -0.92 -52.90 13.29 21.45 0.28 -52.62 16 24 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 N -0.36 -18.42 12.59 -54.47 -0.69 -19.11 16 29 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 0.77 7.65 -2.39 -0.02 0.75 16 31 H 0.08 0.77 7.67 -2.39 -0.02 0.75 16 32 H 0.17 1.31 6.28 -2.91 -0.02 1.29 16 33 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 34 H 0.17 1.22 6.28 -2.91 -0.02 1.20 16 35 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.08 0.68 7.66 -2.39 -0.02 0.66 16 37 H 0.08 0.69 7.66 -2.39 -0.02 0.67 16 38 H 0.42 14.26 8.81 -92.70 -0.82 13.45 16 39 H 0.16 7.37 5.91 -2.91 -0.02 7.36 16 40 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.07 2.73 7.71 -2.39 -0.02 2.71 16 42 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 43 H 0.02 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.05 2.91 7.65 -2.39 -0.02 2.89 16 45 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -82.96 386.17 4.17 -78.79 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.23 Total: 25.41 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 7.07 Total: 9.68 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -3.31 Total: -116.45 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -1.84 Total: -43.51 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -82.96 4.17 -78.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271030842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.365 kcal (2) G-P(sol) polarization free energy of solvation -82.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds